FFCP PHASE1:Mm9::chr10:126497314..126497362,-: Difference between revisions
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{{FFCP|EntrezGene=216438|HGNC=|MCL_coexpression_id=22|UniProt=Q3TZ87|association_with_transcript=-74bp_to_ENSMUST00000040307,NM_001033262,uc007hhu.1_5end|description=CAGE_peak_2_at_March9_5end|id=chr10:126497314..126497362,-|ontology_enrichment_celltype=CL:0000540!2.63e-13!33;CL:0000047!2.63e-13!33;CL:0000031!2.63e-13!33;CL:0000404!2.63e-13!33;CL:0000221!3.69e-13!44;CL:0000133!3.69e-13!44;CL:0002319!1.05e-12!43;CL:0000393!6.56e-12!39;CL:0000211!6.56e-12!39;CL:0000055!7.12e-11!50;CL:0000117!7.20e-11!23;CL:0000337!7.20e-11!23|ontology_enrichment_celltype_v019_2=CL:0000540,8.56e-14,33;CL:0000047,8.56e-14,33;CL:0000031,8.56e-14,33;CL:0000404,8.56e-14,33;CL:0000221,5.93e-13,44;CL:0000133,5.93e-13,44;CL:0002319,1.74e-12,43;CL:0000393,3.48e-12,39;CL:0000211,3.48e-12,39;CL:0000117,2.96e-11,23;CL:0000337,2.96e-11,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.64e-26!102;UBERON:0000924!2.64e-26!102;UBERON:0006601!2.64e-26!102;UBERON:0001017!9.14e-24!73;UBERON:0005743!9.14e-24!73;UBERON:0000073!1.65e-22!75;UBERON:0001016!1.65e-22!75;UBERON:0002346!6.91e-19!71;UBERON:0003075!6.91e-19!71;UBERON:0007284!6.91e-19!71;UBERON:0000033!2.05e-17!63;UBERON:0001049!2.95e-17!52;UBERON:0005068!2.95e-17!52;UBERON:0006241!2.95e-17!52;UBERON:0007135!2.95e-17!52;UBERON:0003056!3.21e-16!49;UBERON:0003080!3.17e-15!40;UBERON:0002780!6.64e-15!39;UBERON:0001890!6.64e-15!39;UBERON:0006240!6.64e-15!39;UBERON:0000955!1.26e-14!50;UBERON:0006238!1.26e-14!50;UBERON:0002616!2.17e-14!49;UBERON:0002020!6.21e-13!34;UBERON:0002791!3.31e-10!29;UBERON:0003528!3.31e-10!29;UBERON:0001893!3.31e-10!29;UBERON:0000153!5.45e-09!94;UBERON:0007811!3.16e-08!86;UBERON:0000956!1.59e-07!21;UBERON:0001869!1.59e-07!21;UBERON:0000203!1.59e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0004121,7.53e-26,95;UBERON:0000924,7.53e-26,95;UBERON:0006601,7.53e-26,95;UBERON:0001017,3.96e-24,73;UBERON:0001016,2.13e-22,75;UBERON:0010371,1.01e-19,73;UBERON:0002346,6.69e-19,64;UBERON:0003075,6.69e-19,64;UBERON:0007284,6.69e-19,64;UBERON:0001049,2.28e-17,52;UBERON:0005068,2.28e-17,52;UBERON:0006241,2.28e-17,52;UBERON:0007135,2.28e-17,52;UBERON:0000073,2.48e-17,54;UBERON:0003056,2.56e-16,49;UBERON:0003080,1.54e-15,40;UBERON:0002780,3.33e-15,39;UBERON:0001890,3.33e-15,39;UBERON:0006240,3.33e-15,39;UBERON:0000955,6.61e-15,47;UBERON:0006238,6.61e-15,47;UBERON:0002616,1.15e-14,46;UBERON:0002020,3.72e-13,34;UBERON:0003528,2.49e-10,29;UBERON:0002791,2.49e-10,29;UBERON:0001893,2.49e-10,29;UBERON:0010314,5.97e-10,92;UBERON:0000956,1.52e-07,21;UBERON:0001869,1.52e-07,21;UBERON:0000203,1.52e-07,21|phase1_expression=3.68342348341026,1.74487703819681,2.27499619694768,0.60492842261366,0.500895729946347,2.85394762250213,1.40167584357315,2.7115897922731,1.12630977721333,2.34064526321993,0.68487187290202,1.35612670292072,1.36960583944965,2.36035086531293,0.333109761815663,0.202475267389826,0,0.788655413395594,0.411343300817216,0.42438965179803,1.36069264241712,2.48227378002213,1.82839852397255,0.639969691173627,1.83527424853736,2.8711598205751,0.86152399231815,1.29282739611533,1.14014051673824,1.51218077855958,2.88249663851896,0.635030673459631,1.84519436275371,0,0.577703239502549,1.66234645358492,1.83752420636132,0,0,0,0,0,0,3.27331726736501,3.54819259268301,4.58866880404204,1.56478268869608,0.872100625521786,2.63623419281366,3.4997381833371,1.95980990275508,2.87505128729943,0.335565212115473,0,0,0.257259436035947,0.573066879877513,0.515672092277442,17.8038485556446,13.7537654610729,11.4089652631112,1.0165335962074,0.889294796111139,0.449949858640699,0,0,5.09320187881288,8.4528027170742,11.0947885170071,13.6355997715008,12.1988477583802,9.14083150092171,6.40518768759679,12.8615339175702,12.2682202903343,13.7882817991503,1.10115880999389,2.42605942361857,2.76491759861238,16.8814448294648,17.199676997253,14.0646610050325,2.79182999001381,1.68828783009504,2.44477196442896,4.71405736757868,6.26435395516053,12.4887628702951,0.681535739998656,0.755715601067855,0.869593466105033,0,0.679971333707751,0,0,0,0.702222100658759,0.340860645156116,0,0.35333957451034,4.50698943285378,0,0,0,1.29894624606728,1.52015919285059,3.53867111510348,0.5709193985953,0.258937883647172,1.63286352971307,2.4287945747259,3.65358573974569,2.07553947530453,2.11011696773672,1.41106448562846,2.01066546127481,7.41584903203122,0.144599356919912,0,0,0.441683036920787,0.484875253135222,1.86391761218122,2.92780797011547,5.02672096352292,1.27728527604296,0.11981512450592,0,0,3.44518470631092,3.20250421973039,12.4397808591736,2.9550134432687,3.58001640262463,1.66230435647648,5.02947915510049,1.52759045775474,1.8661045591514,3.53811861807145,0.841767423545896,3.3831315170303,3.67843367093557,3.96136685571768,3.61691562805716,3.19771546011241,2.94661556655154,2.43624483855295,1.29351685369508,1.94011193639558,2.26927296201383,3.69497360744293,2.84954452155847,2.50242524303038,2.43776516565517,4.11564272815887,1.79130840136644,0,0,0.284163499395593,0.414251545071004,0.23452605998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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:216438 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3TZ87 | |||
|association_with_transcript=-74bp_to_ENSMUST00000040307,NM_001033262,uc007hhu.1_5end | |||
|cluster_id=chr10:126497314..126497362,- | |||
|description=CAGE_peak_2_at_March9_5end | |||
|id=chr10:126497314..126497362,- | |||
|ontology_enrichment_celltype=CL:0000540!2.63e-13!33;CL:0000047!2.63e-13!33;CL:0000031!2.63e-13!33;CL:0000404!2.63e-13!33;CL:0000221!3.69e-13!44;CL:0000133!3.69e-13!44;CL:0002319!1.05e-12!43;CL:0000393!6.56e-12!39;CL:0000211!6.56e-12!39;CL:0000055!7.12e-11!50;CL:0000117!7.20e-11!23;CL:0000337!7.20e-11!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,8.56e-14,33;CL:0000047,8.56e-14,33;CL:0000031,8.56e-14,33;CL:0000404,8.56e-14,33;CL:0000221,5.93e-13,44;CL:0000133,5.93e-13,44;CL:0002319,1.74e-12,43;CL:0000393,3.48e-12,39;CL:0000211,3.48e-12,39;CL:0000117,2.96e-11,23;CL:0000337,2.96e-11,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.64e-26!102;UBERON:0000924!2.64e-26!102;UBERON:0006601!2.64e-26!102;UBERON:0001017!9.14e-24!73;UBERON:0005743!9.14e-24!73;UBERON:0000073!1.65e-22!75;UBERON:0001016!1.65e-22!75;UBERON:0002346!6.91e-19!71;UBERON:0003075!6.91e-19!71;UBERON:0007284!6.91e-19!71;UBERON:0000033!2.05e-17!63;UBERON:0001049!2.95e-17!52;UBERON:0005068!2.95e-17!52;UBERON:0006241!2.95e-17!52;UBERON:0007135!2.95e-17!52;UBERON:0003056!3.21e-16!49;UBERON:0003080!3.17e-15!40;UBERON:0002780!6.64e-15!39;UBERON:0001890!6.64e-15!39;UBERON:0006240!6.64e-15!39;UBERON:0000955!1.26e-14!50;UBERON:0006238!1.26e-14!50;UBERON:0002616!2.17e-14!49;UBERON:0002020!6.21e-13!34;UBERON:0002791!3.31e-10!29;UBERON:0003528!3.31e-10!29;UBERON:0001893!3.31e-10!29;UBERON:0000153!5.45e-09!94;UBERON:0007811!3.16e-08!86;UBERON:0000956!1.59e-07!21;UBERON:0001869!1.59e-07!21;UBERON:0000203!1.59e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,7.53e-26,95;UBERON:0000924,7.53e-26,95;UBERON:0006601,7.53e-26,95;UBERON:0001017,3.96e-24,73;UBERON:0001016,2.13e-22,75;UBERON:0010371,1.01e-19,73;UBERON:0002346,6.69e-19,64;UBERON:0003075,6.69e-19,64;UBERON:0007284,6.69e-19,64;UBERON:0001049,2.28e-17,52;UBERON:0005068,2.28e-17,52;UBERON:0006241,2.28e-17,52;UBERON:0007135,2.28e-17,52;UBERON:0000073,2.48e-17,54;UBERON:0003056,2.56e-16,49;UBERON:0003080,1.54e-15,40;UBERON:0002780,3.33e-15,39;UBERON:0001890,3.33e-15,39;UBERON:0006240,3.33e-15,39;UBERON:0000955,6.61e-15,47;UBERON:0006238,6.61e-15,47;UBERON:0002616,1.15e-14,46;UBERON:0002020,3.72e-13,34;UBERON:0003528,2.49e-10,29;UBERON:0002791,2.49e-10,29;UBERON:0001893,2.49e-10,29;UBERON:0010314,5.97e-10,92;UBERON:0000956,1.52e-07,21;UBERON:0001869,1.52e-07,21;UBERON:0000203,1.52e-07,21 | |||
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| |||
|short_description=p2@March9 | |||
}} |
Revision as of 00:32, 4 August 2015
Short description: | p2@March9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_March9_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -74bp_to_ENSMUST00000040307, NM_001033262, uc007hhu.1_5end |
EntrezGene: | 216438 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 8.56e-14 | 33 |
neuronal stem cell | 8.56e-14 | 33 |
neuroblast | 8.56e-14 | 33 |
electrically signaling cell | 8.56e-14 | 33 |
ectodermal cell | 5.93e-13 | 44 |
neurectodermal cell | 5.93e-13 | 44 |
neural cell | 1.74e-12 | 43 |
electrically responsive cell | 3.48e-12 | 39 |
electrically active cell | 3.48e-12 | 39 |
CNS neuron (sensu Vertebrata) | 2.96e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.96e-11 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 7.53e-26 | 95 |
ectoderm | 7.53e-26 | 95 |
presumptive ectoderm | 7.53e-26 | 95 |
central nervous system | 3.96e-24 | 73 |
nervous system | 2.13e-22 | 75 |
ecto-epithelium | 1.01e-19 | 73 |
neurectoderm | 6.69e-19 | 64 |
neural plate | 6.69e-19 | 64 |
presumptive neural plate | 6.69e-19 | 64 |
neural tube | 2.28e-17 | 52 |
neural rod | 2.28e-17 | 52 |
future spinal cord | 2.28e-17 | 52 |
neural keel | 2.28e-17 | 52 |
regional part of nervous system | 2.48e-17 | 54 |
pre-chordal neural plate | 2.56e-16 | 49 |
anterior neural tube | 1.54e-15 | 40 |
regional part of forebrain | 3.33e-15 | 39 |
forebrain | 3.33e-15 | 39 |
future forebrain | 3.33e-15 | 39 |
brain | 6.61e-15 | 47 |
future brain | 6.61e-15 | 47 |
regional part of brain | 1.15e-14 | 46 |
gray matter | 3.72e-13 | 34 |
brain grey matter | 2.49e-10 | 29 |
regional part of telencephalon | 2.49e-10 | 29 |
telencephalon | 2.49e-10 | 29 |
structure with developmental contribution from neural crest | 5.97e-10 | 92 |
cerebral cortex | 1.52e-07 | 21 |
cerebral hemisphere | 1.52e-07 | 21 |
pallium | 1.52e-07 | 21 |