FFCP PHASE1:Hg19::chr2:131113652..131113664,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26469 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9649 | |||
|TSSclassifier=strong | |||
|UniProt=E7EMB8 | |||
|association_with_transcript=1bp_to_ENST00000409022_5end | |||
|description=CAGE_peak_4_at_PTPN18_5end | |||
|id=chr2:131113652..131113664,+ | |||
|ontology_enrichment_celltype=CL:0000766!8.88e-25!76;CL:0000839!5.11e-23!70;CL:0002194!5.98e-23!63;CL:0000576!5.98e-23!63;CL:0000040!5.98e-23!63;CL:0000559!5.98e-23!63;CL:0000557!1.47e-22!71;CL:0002009!5.14e-22!65;CL:0000860!1.29e-19!45;CL:0002057!1.44e-19!42;CL:0000763!1.50e-16!112;CL:0000049!1.50e-16!112;CL:0002393!1.59e-07!9;CL:0002397!1.59e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.00e-15;39!CL:0000234;1.00e-15;39!CL:0000576;2.15e-15;48!CL:0000860;3.23e-14;33!CL:0002057;3.23e-14;33!CL:0000766;8.48e-14;69!CL:0000763;6.91e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,8.34e-31,72;CL:0000557,4.72e-28,67;CL:0000839,6.51e-28,66;CL:0002194,8.70e-28,59;CL:0000576,8.70e-28,59;CL:0000040,8.70e-28,59;CL:0000559,8.70e-28,59;CL:0000473,4.35e-27,48;CL:0000234,4.35e-27,48;CL:0002009,5.09e-27,61;CL:0000860,8.62e-23,42;CL:0002057,8.62e-23,42;CL:0000763,4.14e-20,108;CL:0000049,4.14e-20,108;CL:0002393,6.81e-09,9;CL:0002397,6.81e-09,9;CL:0000738,3.14e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;9.29e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!6.93e-20!511;UBERON:0002371!5.86e-19!80;UBERON:0002390!6.41e-18!102;UBERON:0003061!6.41e-18!102;UBERON:0007023!1.65e-17!115;UBERON:0001474!4.66e-17!86;UBERON:0002193!7.96e-17!112;UBERON:0002405!2.41e-16!115;UBERON:0000467!8.96e-13!625;UBERON:0004765!9.29e-13!101;UBERON:0001434!9.29e-13!101;UBERON:0000480!1.75e-12!626;UBERON:0002050!2.40e-12!605;UBERON:0005423!2.40e-12!605;UBERON:0000923!4.49e-12!604;UBERON:0005291!4.49e-12!604;UBERON:0006598!4.49e-12!604;UBERON:0002532!4.49e-12!604;UBERON:0000468!5.01e-12!659;UBERON:0000922!1.90e-11!612;UBERON:0001049!3.81e-08!57;UBERON:0005068!3.81e-08!57;UBERON:0006241!3.81e-08!57;UBERON:0007135!3.81e-08!57;UBERON:0000926!2.03e-07!448;UBERON:0004120!2.03e-07!448;UBERON:0006603!2.03e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.70e-24,76;UBERON:0002390,4.92e-24,98;UBERON:0003061,4.92e-24,98;UBERON:0001474,5.90e-22,82;UBERON:0002193,9.38e-22,108;UBERON:0002405,1.51e-19,93;UBERON:0004765,2.08e-18,90;UBERON:0007023,2.37e-17,114;UBERON:0001434,2.39e-15,100;UBERON:0005423,3.66e-10,581;UBERON:0000922,4.90e-09,592;UBERON:0000923,2.55e-08,560;UBERON:0010316,2.55e-08,560;UBERON:0005291,2.55e-08,560;UBERON:0006598,2.55e-08,560;UBERON:0010317,2.55e-08,560;UBERON:0002532,2.55e-08,560;UBERON:0002050,3.69e-08,564;UBERON:0003081,9.98e-08,203;UBERON:0001049,3.32e-07,56;UBERON:0005068,3.32e-07,56;UBERON:0006241,3.32e-07,56;UBERON:0007135,3.32e-07,56 | |||
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| |||
|short_description=p4@PTPN18 | |||
}} |
Revision as of 05:24, 21 January 2014
Short description: | p4@PTPN18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PTPN18_5end |
Coexpression cluster: | NA |
Association with transcript: | 1bp_to_ENST00000409022_5end |
EntrezGene: | PTPN18 |
HGNC: | 9649 |
UniProt: | E7EMB8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 8.34e-31 | 72 |
granulocyte monocyte progenitor cell | 4.72e-28 | 67 |
myeloid lineage restricted progenitor cell | 6.51e-28 | 66 |
monopoietic cell | 8.70e-28 | 59 |
monocyte | 8.70e-28 | 59 |
monoblast | 8.70e-28 | 59 |
promonocyte | 8.70e-28 | 59 |
defensive cell | 4.35e-27 | 48 |
phagocyte | 4.35e-27 | 48 |
macrophage dendritic cell progenitor | 5.09e-27 | 61 |
classical monocyte | 8.62e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.62e-23 | 42 |
myeloid cell | 4.14e-20 | 108 |
common myeloid progenitor | 4.14e-20 | 108 |
intermediate monocyte | 6.81e-09 | 9 |
CD14-positive, CD16-positive monocyte | 6.81e-09 | 9 |
leukocyte | 3.14e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.70e-24 | 76 |
hematopoietic system | 4.92e-24 | 98 |
blood island | 4.92e-24 | 98 |
bone element | 5.90e-22 | 82 |
hemolymphoid system | 9.38e-22 | 108 |
immune system | 1.51e-19 | 93 |
skeletal element | 2.08e-18 | 90 |
adult organism | 2.37e-17 | 114 |
skeletal system | 2.39e-15 | 100 |
developing anatomical structure | 3.66e-10 | 581 |
embryo | 4.90e-09 | 592 |
germ layer | 2.55e-08 | 560 |
germ layer / neural crest | 2.55e-08 | 560 |
embryonic tissue | 2.55e-08 | 560 |
presumptive structure | 2.55e-08 | 560 |
germ layer / neural crest derived structure | 2.55e-08 | 560 |
epiblast (generic) | 2.55e-08 | 560 |
embryonic structure | 3.69e-08 | 564 |
lateral plate mesoderm | 9.98e-08 | 203 |
neural tube | 3.32e-07 | 56 |
neural rod | 3.32e-07 | 56 |
future spinal cord | 3.32e-07 | 56 |
neural keel | 3.32e-07 | 56 |