FFCP PHASE1:Hg19::chr2:11752379..11752396,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9687 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24885 | |||
|TSSclassifier=strong | |||
|UniProt=Q4ZG55 | |||
|association_with_transcript=0bp_to_ENST00000396123,uc002rbp.1_5end | |||
|coexpression_cluster_id=C88 | |||
|description=CAGE_peak_5_at_GREB1_5end | |||
|id=chr2:11752379..11752396,+ | |||
|ontology_enrichment_celltype=CL:0000148!1.50e-07!10;CL:0000541!1.50e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000148;1.32e-34;10!CL:0000147;1.18e-31;14!CL:0002567;1.65e-22;3!CL:0000710;6.67e-17;20!CL:0000075;2.68e-12;27!CL:0002566;1.22e-08;1!CL:0002077;1.36e-08;34!CL:0000319;3.69e-08;1!CL:0000149;6.47e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.37e-34,10;CL:0000541,1.37e-34,10;CL:0000147,1.70e-31,14;CL:0002567,1.72e-22,3;CL:0000710,6.78e-17,20;CL:0000075,2.71e-12,27;CL:0002077,1.39e-09,34;CL:0002566,1.22e-08,1;CL:0000319,3.10e-08,1;CL:0000149,8.53e-08,4;CL:0000333,2.15e-07,41 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;1.48e-15;2!DOID:3030;3.69e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,1.43e-15,2;DOID:3030,3.10e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.54e-17!57;UBERON:0005068!1.54e-17!57;UBERON:0006241!1.54e-17!57;UBERON:0007135!1.54e-17!57;UBERON:0001893!2.71e-17!34;UBERON:0002780!5.54e-17!41;UBERON:0001890!5.54e-17!41;UBERON:0006240!5.54e-17!41;UBERON:0002020!7.33e-17!34;UBERON:0003528!7.33e-17!34;UBERON:0003080!2.22e-16!42;UBERON:0000955!2.77e-16!69;UBERON:0006238!2.77e-16!69;UBERON:0002791!3.38e-16!33;UBERON:0001869!2.12e-15!32;UBERON:0002616!2.33e-15!59;UBERON:0005743!9.22e-15!86;UBERON:0001017!6.38e-14!82;UBERON:0000073!7.59e-14!94;UBERON:0001016!7.59e-14!94;UBERON:0002619!9.78e-13!22;UBERON:0003056!1.26e-11!61;UBERON:0003075!1.67e-11!86;UBERON:0007284!1.67e-11!86;UBERON:0000956!1.11e-10!25;UBERON:0000203!1.11e-10!25;UBERON:0001950!1.35e-10!20;UBERON:0002346!1.61e-10!90;UBERON:0007023!1.45e-09!115;UBERON:0000033!1.13e-08!123;UBERON:0000153!3.23e-08!129;UBERON:0007811!3.23e-08!129;UBERON:0002308!4.05e-08!9;UBERON:0000125!4.05e-08!9;UBERON:0004121!9.50e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;3.51e-10;22!UBERON:0000956;6.01e-09;25!UBERON:0000203;6.01e-09;25!UBERON:0002022;3.69e-08;1!UBERON:0007190;3.69e-08;1!UBERON:0001893;4.39e-08;34!UBERON:0001950;5.91e-08;20!UBERON:0001869;8.05e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,3.46e-10,22;UBERON:0001869,2.75e-09,32;UBERON:0000956,5.93e-09,25;UBERON:0000203,5.93e-09,25;UBERON:0001893,1.04e-08,34;UBERON:0002022,2.69e-08,1;UBERON:0007190,5.07e-08,1;UBERON:0001950,6.34e-08,20;UBERON:0002780,4.00e-07,41;UBERON:0001890,4.00e-07,41;UBERON:0003080,4.00e-07,41;UBERON:0006240,4.00e-07,41;UBERON:0002791,6.06e-07,32 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11957737119962,0.971680998056939,0.77272670290256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0.26591592103773,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.264818361626438,0,0,0,0,0,0.311211035399766,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,0.4115740113314,0,0,0,0,0,0.122988438543114,0,0.219500570817251,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738651018262192,0.234004265139238,0.594524649154913,0.93733833986777,0,0.141775097242386,0.268675568108545,0,0,0,0,0,0,0,7.04826626643076,10.6956759156318,12.8939191931052,5.13217338068116,4.21592720083626,4.80548892550268,6.85983438313388,0.112131084345361,0,0.07333828582095,0.387815147273333,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,1.20575750823834,0,0.199945982364114,1.2162378064119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306923946576125,0,0.128139149255701,0,0.160853921143607,0,0,0,0,0,0,0,0.40101294060657,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02580050046556,0,0,0.103041011647722,0,0,0,0,0,0,0.154048617114644,0,0,0.107420244868274,0.145016693914229,0.0852266274161009,0,0.165284915360978,0,0.127612712494584,0,0.464845549297286,0,0,0,0,0,0,0,0,0,0.762520775695299,0,0,0,0,0.359744915166629,0.54907405947211,0.235624804691373,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.422008249231538,0.111308705022906,0,0,0,0,0,0,0.123084805461069,0,0.0898683511473268,0,0,0,0,0,0,0.649376687132959,0,0,0,0,0.1137934482855,0,0,0,0,0,0.885741385813839,0.361789315876224,0,0,0,0,0.32681539055697,0,0,0.341826167541004,0,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0.471807930864739,0,0.234264445725339,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0.0730893170861856,0.0821154570532092,0,0,0,0.137041924646751,0.993573058514948,1.01297273529406,0,0.0801588202515337,0,0.599428828746391,0,0,0,0,0.372757606696298,0,0.135904206073614,0.418411385249333,0.203996435272644,0,0,0.273810757783986,0,0,0,0,0,0,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,1.59045937961861,0.681017030557878,0,0,0,0,0,1.57948847310864,0,0,0,0.422401346077626,0,0,0.714695326373367,0,0,0,0,0,0,0,0.511164065356265,0.226624183040251,0,0,0.258565912723101,0.26446520348538,0.855434189421647,0,0.427149650270779,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0.886068179966986,1.09823638411767,0.751145584238999,0,0.221858103073705,0.310482014706917,0,0,5.15606999641603,11.4186133417987,0,0,0,0.149254802886874,0,0,0,0.50313580350515,0,0.457680136793847,0.302461847526478,0,0,0,0.449803112163605,0.310525913752519,1.24411862352257,0.265841714557995,0,0.150257608997218,1.52322084867518,0.406870733204662,0,0.322231671127465,0,0,0,0,0,0,0.57785949122191,0,0,0,0,0,0.179088841081487,0,0.877136198314828,0.883445729729405,0.192914038270915,0,0.256241518587947,1.72715170865599,0.607719912354764,0,0.389720617678777,0,0,0.655219697692825,1.47463745252232,0,0,0.106691729694141,0,0,0.736423801007363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.770750701157514,0,0.159633859057151,0.82046545696302,0,0.414943514785307,0.645902582527404,0,1.17777262201231,0.11796972334774,0,0,0,0,0,0.0752103283492573,0.20170506870352,0,0,0,0,1.14813893851271,0.781078098613847,0.620060389503552,1.20490039368423,0,0,0,0,0,0,0.336283722218824,0,0,0,0,0.514464028312255,0.203909198930495,0.986591603442736,0,0,0,0.157115589916002,0,0,1.07963795609311,0,0.571812353413251,0.158013611732727,0,0,0,0,0,0,0,0.473328002922261,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588925401344836,0.594092800654172,0,0,0,0,0,0.357107877211315,1.76447435857846,0.160482733378337,0,0,0.573358332605805,0,1.97175321553653,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.20686599172379,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@GREB1 | |||
}} |
Revision as of 01:45, 21 January 2014
Short description: | p5@GREB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_GREB1_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | 0bp_to_ENST00000396123, uc002rbp.1_5end |
EntrezGene: | GREB1 |
HGNC: | 24885 |
UniProt: | Q4ZG55 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.37e-34 | 10 |
melanoblast | 1.37e-34 | 10 |
pigment cell | 1.70e-31 | 14 |
light melanocyte | 1.72e-22 | 3 |
neurecto-epithelial cell | 6.78e-17 | 20 |
columnar/cuboidal epithelial cell | 2.71e-12 | 27 |
ecto-epithelial cell | 1.39e-09 | 34 |
dark melanocyte | 1.22e-08 | 1 |
mucus secreting cell | 3.10e-08 | 1 |
visual pigment cell | 8.53e-08 | 4 |
migratory neural crest cell | 2.15e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 3.46e-10 | 22 |
cerebral hemisphere | 2.75e-09 | 32 |
cerebral cortex | 5.93e-09 | 25 |
pallium | 5.93e-09 | 25 |
telencephalon | 1.04e-08 | 34 |
insula | 2.69e-08 | 1 |
paracentral gyrus | 5.07e-08 | 1 |
neocortex | 6.34e-08 | 20 |
regional part of forebrain | 4.00e-07 | 41 |
forebrain | 4.00e-07 | 41 |
anterior neural tube | 4.00e-07 | 41 |
future forebrain | 4.00e-07 | 41 |
regional part of telencephalon | 6.06e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.43e-15 | 2 |
mucinous adenocarcinoma | 3.10e-08 | 1 |