FFCP PHASE1:Hg19::chr21:34100200..34100240,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8867 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11503 | |||
|TSSclassifier=strong | |||
|UniProt=O43426,C9JW66,B9EGN3 | |||
|association_with_transcript=9bp_to_ENST00000357345,ENST00000382491,ENST00000429236,NM_001160302,NM_001160306,uc002yqf.2,uc002yqg.2_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_1_at_SYNJ1_5end | |||
|id=chr21:34100200..34100240,- | |||
|ontology_enrichment_celltype=CL:0000766!1.12e-30!76;CL:0000557!7.56e-27!71;CL:0000839!6.92e-26!70;CL:0002009!7.40e-25!65;CL:0002057!2.39e-24!42;CL:0002194!4.04e-24!63;CL:0000576!4.04e-24!63;CL:0000040!4.04e-24!63;CL:0000559!4.04e-24!63;CL:0000860!5.08e-24!45;CL:0000763!6.10e-22!112;CL:0000049!6.10e-22!112;CL:0000738!6.54e-21!140;CL:0000037!1.45e-16!172;CL:0000566!1.45e-16!172;CL:0002031!2.89e-16!124;CL:0002032!2.01e-15!165;CL:0000837!2.01e-15!165;CL:0000988!1.20e-14!182;CL:0002087!1.21e-14!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.28e-18;33!CL:0002057;2.28e-18;33!CL:0000576;3.73e-16;48!CL:0000473;1.06e-15;39!CL:0000234;1.06e-15;39!CL:0000766;9.20e-14;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.70e-31,72;CL:0000557,2.13e-27,67;CL:0000839,2.05e-26,66;CL:0002009,2.01e-25,61;CL:0002194,1.09e-24,59;CL:0000576,1.09e-24,59;CL:0000040,1.09e-24,59;CL:0000559,1.09e-24,59;CL:0000860,2.06e-24,42;CL:0002057,2.06e-24,42;CL:0000473,2.64e-24,48;CL:0000234,2.64e-24,48;CL:0000763,8.25e-22,108;CL:0000049,8.25e-22,108;CL:0000738,6.84e-21,136;CL:0000037,2.64e-16,168;CL:0002031,3.19e-16,120;CL:0002032,3.62e-15,161;CL:0000837,3.62e-15,161;CL:0002087,1.37e-14,115;CL:0000988,1.91e-14,177 | |||
|ontology_enrichment_development_v019=CL:0002057;5.18e-18;42!CL:0000049;4.76e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.03e-27!102;UBERON:0003061!2.03e-27!102;UBERON:0002193!3.69e-27!112;UBERON:0002371!1.22e-24!80;UBERON:0001474!5.57e-23!86;UBERON:0007023!1.68e-21!115;UBERON:0004765!5.52e-21!101;UBERON:0001434!5.52e-21!101;UBERON:0001049!8.20e-18!57;UBERON:0005068!8.20e-18!57;UBERON:0006241!8.20e-18!57;UBERON:0007135!8.20e-18!57;UBERON:0002780!8.85e-18!41;UBERON:0001890!8.85e-18!41;UBERON:0006240!8.85e-18!41;UBERON:0003080!3.48e-17!42;UBERON:0002405!5.48e-17!115;UBERON:0002616!1.94e-16!59;UBERON:0000955!9.62e-16!69;UBERON:0006238!9.62e-16!69;UBERON:0001893!5.42e-15!34;UBERON:0002020!6.98e-15!34;UBERON:0003528!6.98e-15!34;UBERON:0001869!1.54e-14!32;UBERON:0001017!1.65e-14!82;UBERON:0002791!2.30e-14!33;UBERON:0005743!3.65e-13!86;UBERON:0002619!1.54e-12!22;UBERON:0000956!9.35e-12!25;UBERON:0000203!9.35e-12!25;UBERON:0001950!1.55e-11!20;UBERON:0000073!2.93e-10!94;UBERON:0001016!2.93e-10!94;UBERON:0003081!1.34e-08!216;UBERON:0002204!1.68e-08!167;UBERON:0003075!4.66e-08!86;UBERON:0007284!4.66e-08!86;UBERON:0003056!1.62e-07!61;UBERON:0002346!8.74e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.23e-13;32!UBERON:0001893;1.81e-13;34!UBERON:0003528;2.61e-13;34!UBERON:0002020;2.61e-13;34!UBERON:0002791;2.80e-13;32!UBERON:0002780;3.07e-13;41!UBERON:0001890;3.07e-13;41!UBERON:0002619;1.25e-12;22!UBERON:0000956;3.65e-12;25!UBERON:0000203;3.65e-12;25!UBERON:0001950;1.31e-11;20!UBERON:0000073;2.21e-11;53!UBERON:0002616;2.21e-11;53!UBERON:0000955;2.40e-08;68!UBERON:0001017;8.25e-08;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.17e-27,98;UBERON:0003061,1.17e-27,98;UBERON:0002193,2.50e-27,108;UBERON:0002371,5.37e-25,76;UBERON:0002405,3.58e-24,93;UBERON:0004765,3.61e-24,90;UBERON:0001474,2.49e-23,82;UBERON:0001434,1.52e-21,100;UBERON:0007023,3.92e-21,114;UBERON:0001049,1.60e-18,56;UBERON:0005068,1.60e-18,56;UBERON:0006241,1.60e-18,56;UBERON:0007135,1.60e-18,56;UBERON:0000073,2.44e-18,53;UBERON:0002616,2.44e-18,53;UBERON:0002780,7.96e-18,41;UBERON:0001890,7.96e-18,41;UBERON:0003080,7.96e-18,41;UBERON:0006240,7.96e-18,41;UBERON:0000955,2.63e-16,68;UBERON:0006238,2.63e-16,68;UBERON:0001017,4.08e-15,81;UBERON:0001893,4.97e-15,34;UBERON:0003528,6.40e-15,34;UBERON:0002020,6.40e-15,34;UBERON:0001869,1.42e-14,32;UBERON:0002791,3.67e-14,32;UBERON:0002619,1.43e-12,22;UBERON:0001016,7.36e-12,89;UBERON:0000956,8.74e-12,25;UBERON:0000203,8.74e-12,25;UBERON:0001950,1.45e-11,20;UBERON:0003081,5.28e-11,203;UBERON:0003075,1.53e-08,82;UBERON:0007284,1.53e-08,82;UBERON:0002204,1.96e-08,167;UBERON:0003056,2.86e-07,61;UBERON:0002346,4.07e-07,86 | |||
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| |||
|short_description=p1@SYNJ1 | |||
}} |
Revision as of 13:24, 21 January 2014
Short description: | p1@SYNJ1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SYNJ1_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 9bp_to_ENST00000357345, ENST00000382491, ENST00000429236, NM_001160302, NM_001160306, uc002yqf.2, uc002yqg.2_5end |
EntrezGene: | SYNJ1 |
HGNC: | 11503 |
UniProt: | O43426C9JW66B9EGN3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.70e-31 | 72 |
granulocyte monocyte progenitor cell | 2.13e-27 | 67 |
myeloid lineage restricted progenitor cell | 2.05e-26 | 66 |
macrophage dendritic cell progenitor | 2.01e-25 | 61 |
monopoietic cell | 1.09e-24 | 59 |
monocyte | 1.09e-24 | 59 |
monoblast | 1.09e-24 | 59 |
promonocyte | 1.09e-24 | 59 |
classical monocyte | 2.06e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.06e-24 | 42 |
defensive cell | 2.64e-24 | 48 |
phagocyte | 2.64e-24 | 48 |
myeloid cell | 8.25e-22 | 108 |
common myeloid progenitor | 8.25e-22 | 108 |
leukocyte | 6.84e-21 | 136 |
hematopoietic stem cell | 2.64e-16 | 168 |
hematopoietic lineage restricted progenitor cell | 3.19e-16 | 120 |
hematopoietic oligopotent progenitor cell | 3.62e-15 | 161 |
hematopoietic multipotent progenitor cell | 3.62e-15 | 161 |
nongranular leukocyte | 1.37e-14 | 115 |
hematopoietic cell | 1.91e-14 | 177 |