FFCP PHASE1:Hg19::chr20:35580152..35580163,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25939 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15925 | |||
|TSSclassifier=strong | |||
|UniProt=Q9Y3Z3 | |||
|association_with_transcript=12bp_to_uc002xgh.1_5end | |||
|coexpression_cluster_id=C936 | |||
|description=CAGE_peak_5_at_SAMHD1_5end | |||
|id=chr20:35580152..35580163,- | |||
|ontology_enrichment_celltype=CL:0002194!1.77e-30!63;CL:0000576!1.77e-30!63;CL:0000040!1.77e-30!63;CL:0000559!1.77e-30!63;CL:0002009!1.84e-29!65;CL:0000557!2.00e-28!71;CL:0000766!8.96e-27!76;CL:0000839!1.07e-26!70;CL:0002057!3.62e-25!42;CL:0002087!2.77e-24!119;CL:0000860!1.39e-23!45;CL:0000738!2.39e-22!140;CL:0002031!4.87e-21!124;CL:0000037!2.82e-18!172;CL:0000566!2.82e-18!172;CL:0000763!1.69e-17!112;CL:0000049!1.69e-17!112;CL:0002032!3.14e-16!165;CL:0000837!3.14e-16!165;CL:0000988!1.19e-15!182;CL:0000791!8.03e-07!18;CL:0000789!8.03e-07!18;CL:0002420!8.03e-07!18;CL:0002419!8.03e-07!18;CL:0000790!8.03e-07!18;CL:0002393!9.27e-07!9;CL:0002397!9.27e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.02e-27;39!CL:0000234;1.02e-27;39!CL:0000860;2.76e-27;33!CL:0002057;2.76e-27;33!CL:0000576;5.68e-27;48!CL:0000766;9.39e-20;69!CL:0000763;2.42e-10;100!CL:0002087;2.56e-10;104!CL:0000791;6.62e-09;18!CL:0000789;6.62e-09;18!CL:0002419;6.62e-09;18!CL:0000738;2.58e-08;136!CL:0000235;2.76e-07;6!CL:0002393;7.38e-07;6!CL:0002397;7.38e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,7.98e-50,59;CL:0000576,7.98e-50,59;CL:0000040,7.98e-50,59;CL:0000559,7.98e-50,59;CL:0002009,2.00e-47,61;CL:0000557,6.97e-46,67;CL:0000766,1.24e-45,72;CL:0000839,9.91e-45,66;CL:0000473,5.47e-44,48;CL:0000234,5.47e-44,48;CL:0000860,5.46e-38,42;CL:0002057,5.46e-38,42;CL:0002087,4.31e-37,115;CL:0000738,3.85e-35,136;CL:0002031,3.48e-32,120;CL:0000763,3.82e-30,108;CL:0000049,3.82e-30,108;CL:0000037,5.49e-30,168;CL:0000988,8.23e-27,177;CL:0002032,2.09e-26,161;CL:0000837,2.09e-26,161;CL:0002393,1.41e-09,9;CL:0002397,1.41e-09,9;CL:0000791,5.61e-09,18;CL:0000789,5.61e-09,18;CL:0002420,5.61e-09,18;CL:0002419,5.61e-09,18;CL:0000790,5.61e-09,18;CL:0000235,2.72e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002057;1.75e-27;42!CL:0000049;2.17e-09;108!CL:0000790;6.62e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.68e-28!102;UBERON:0003061!2.68e-28!102;UBERON:0002193!1.07e-26!112;UBERON:0002371!3.35e-23!80;UBERON:0007023!2.45e-20!115;UBERON:0001474!6.58e-20!86;UBERON:0002405!1.16e-17!115;UBERON:0004765!4.26e-15!101;UBERON:0001434!4.26e-15!101;UBERON:0003081!6.74e-08!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.14e-46,98;UBERON:0003061,4.14e-46,98;UBERON:0002193,1.18e-41,108;UBERON:0002371,2.23e-40,76;UBERON:0001474,1.01e-36,82;UBERON:0002405,1.39e-35,93;UBERON:0004765,2.59e-31,90;UBERON:0001434,9.63e-27,100;UBERON:0003081,1.29e-16,203;UBERON:0007023,3.62e-13,114;UBERON:0002204,4.16e-12,167;UBERON:0000926,3.49e-09,315;UBERON:0004120,3.49e-09,315;UBERON:0006603,3.49e-09,315 | |||
|phase1_expression=3.45188920614058,3.21150785836475,4.51054093107108,3.00219895059391,6.70441641640932,1.74467704820074,2.53299878168311,6.31719873426831,1.82829939739887,0,0,0,0,0.247532705920093,0,0,0,0.730310090387373,0,0.123121058076788,0.204000691244253,0,0,0.273748850145768,0,0.305653622991805,0.164201178899891,0.314843125254717,4.32700704533794,2.68680578668049,2.94150634300544,0.919421224478927,0,0.369754010166788,0.387336002901508,0.142169232487422,2.64240395401362,2.21598163412751,4.21143339687298,3.47217393145363,2.01523926815932,2.26725566213286,2.31818010870768,3.05336301437086,3.02300754951048,5.33684934613196,4.18372266430232,1.23350366406548,2.47765096716083,15.247696793074,15.1134816852169,13.4794871036494,1.03423704220986,3.22742341791913,5.41705946377367,2.44715041405386,2.18324920046277,2.69668181334102,4.28517449319264,3.53021929783703,7.03270838378945,23.7492936134436,10.7710375115681,19.1801137739712,5.5139755339431,4.53908179752912,7.4738669879469,15.8286659111748,8.86520961314342,7.8187984093842,16.345786571101,4.41933163185078,8.86094684834476,12.0415513197807,11.6932364980774,12.1602014394858,8.53697596713363,7.65902153491682,17.8405401233759,5.13022938734247,7.16100037916724,8.40255107317316,0,1.09227722252426,0,1.28019066769952,0.400395987036012,0,0,0,0,0.587237189370939,0,0,1.12101712596307,2.10707267820062,1.57367816091066,3.14408610199332,2.2616164889946,5.3499678525017,10.4295125322749,8.04861269749047,5.84480185223734,3.67654507721073,7.65975359434577,8.19675409959398,7.58250818542044,3.71464827204458,3.51160238411671,3.12432018746985,2.76350017785848,2.89803085735052,5.33831627383417,7.75868401460168,3.1360657141493,6.00539516297101,2.29932296161153,2.40539211837841,4.04831507231205,2.86708872891687,2.60433381542567,1.90090408889675,3.91495309602209,2.30375900077953,2.49861453104692,2.8413270245282,1.64225599384209,0.201606743224732,1.06976078313403,1.01377082717959,4.87613732627923,0.670700859703636,0,0,0,0,0,0.486634870302636,0.0945348171640679,0,0.087834785693126,0.982343066232845,0,0,7.14004266040303,7.48757870386849,8.7752253942451,4.5313218618015,4.57595928624102,4.82894751728434,0,0.860234595106124,0,0,0,0,0,0.258416759169329,1.06729878806013,0,0,0,0,0,0,0.17859945656816,0,0.675668882899933,0,0,0.183201743930407,0,0,0,0,0,0.264818361626438,0.860509862246441,0.354668382198357,0.560677600142307,0,0,0.622422070799533,0.134710672069688,0.163461903113459,0.151357427644931,0,0.234321431833797,0.312160076830321,0,0.298897361103602,0.117434498643765,0,0.280901613404497,0.204154171254893,0.122834317311768,0.516628905878827,0,0.741800787835671,0,0,0,0.250237039743928,0,0,0,0.751190294532984,0,0.179389635688862,0,0.211931901159562,0,0.103052529238439,0.257640540045629,0.37223371266318,0.168776332241266,0.0974370051611986,0.252433774244115,0.184099797284599,0.161646056818812,0,0.302256294682921,0,0.193260853163297,0.545492241181669,0,0.243947412259191,0.265059536642971,0.232387885739037,0.10366105501537,0.504641701751257,0.36497735907583,0,1.28648187638577,0,6.50115099244771,9.38443326170461,0,0.168584690078102,0.241011029883482,0,0,0.237270619111097,0,0.196221465125346,0,0,0,0,0,0,0.982827216677626,1.77236972004421,0,0.122988438543114,0,0,0,0.100528972411631,0.0925884451585296,0.325808305310325,0,0,0,0.117408694235822,0.577465791044295,0.925971025153221,0,0,0,4.18568910348575,5.6161023633417,9.36376322418988,0,0.335964256397719,0,0,0,0.383382679165211,0,0,1.03664057770386,1.15295962733569,0.25248486685276,0.126995788584338,0.763976851116555,0,0,0.205654985406647,0,0,0,0,0,0,0,0,0.26593811658487,0,0,1.41849132023278,0,0,0.542621605391443,0,0,0.355391948742546,0,0.301439377059586,0,0.199945982364114,4.86495122564762,9.5428847372104,14.7583757638122,0.239624855491583,0,0,0.289562613335158,0,0,0.112085143993527,0.394061520403854,1.2937654491571,1.02674429023799,0.254094624222463,0,0,0.335032530668698,0,0,0,2.48649308061621,0.24538298343828,0,0,0.207970861530807,0,0.157702415033935,0.468565659970853,0,0,5.17365356462525,0,0.184369168541703,0.347534457872331,0,0,4.13536052245775,7.98142543028882,5.97674323699288,0,0,0,0,0.153461973288062,0.280660094433074,0.256278298511402,0,0.160853921143607,0,0.616838775210622,0.177561725313127,0.164254312027618,0.519254429183621,0.581051892299796,0,0,0.0920809889358963,0.229628896329213,0,0.524497659837696,0,0.0770153371044148,0,0,0.211103257785751,1.13733384070897,0,0.215915916102139,0,0.270946437543853,0,0,0,0,0,0,0,0,0,2.16386124460217,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0,0.107420244868274,0,0.255679882248303,0.0890320356467374,0,0,0.127612712494584,0,0,0,0.6970372701606,1.54016790088044,0,0,0,0.286249773483982,0,0,0,0,0.42793898803392,0,0,0,0.274537029736055,0,0.202182481573316,0,0,0,2.19342140668156,0,0.682499557039929,0.848432591722276,1.13008116620243,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0.0982490410131212,0,0,0.211107635297664,0,0,0,0,0,0,1.97701981631236,0,0,0,0,6.08937131078603,2.29391162142713,4.5571774973933,3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| |||
|short_description=p5@SAMHD1 | |||
}} |
Revision as of 11:06, 21 January 2014
Short description: | p5@SAMHD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SAMHD1_5end |
Coexpression cluster: | C936_CD4_CD14_granulocyte_CD14CD16_CD8_Dendritic_Hair |
Association with transcript: | 12bp_to_uc002xgh.1_5end |
EntrezGene: | SAMHD1 |
HGNC: | 15925 |
UniProt: | Q9Y3Z3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 7.98e-50 | 59 |
monocyte | 7.98e-50 | 59 |
monoblast | 7.98e-50 | 59 |
promonocyte | 7.98e-50 | 59 |
macrophage dendritic cell progenitor | 2.00e-47 | 61 |
granulocyte monocyte progenitor cell | 6.97e-46 | 67 |
myeloid leukocyte | 1.24e-45 | 72 |
myeloid lineage restricted progenitor cell | 9.91e-45 | 66 |
defensive cell | 5.47e-44 | 48 |
phagocyte | 5.47e-44 | 48 |
classical monocyte | 5.46e-38 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.46e-38 | 42 |
nongranular leukocyte | 4.31e-37 | 115 |
leukocyte | 3.85e-35 | 136 |
hematopoietic lineage restricted progenitor cell | 3.48e-32 | 120 |
myeloid cell | 3.82e-30 | 108 |
common myeloid progenitor | 3.82e-30 | 108 |
hematopoietic stem cell | 5.49e-30 | 168 |
hematopoietic cell | 8.23e-27 | 177 |
hematopoietic oligopotent progenitor cell | 2.09e-26 | 161 |
hematopoietic multipotent progenitor cell | 2.09e-26 | 161 |
intermediate monocyte | 1.41e-09 | 9 |
CD14-positive, CD16-positive monocyte | 1.41e-09 | 9 |
mature alpha-beta T cell | 5.61e-09 | 18 |
alpha-beta T cell | 5.61e-09 | 18 |
immature T cell | 5.61e-09 | 18 |
mature T cell | 5.61e-09 | 18 |
immature alpha-beta T cell | 5.61e-09 | 18 |
macrophage | 2.72e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.14e-46 | 98 |
blood island | 4.14e-46 | 98 |
hemolymphoid system | 1.18e-41 | 108 |
bone marrow | 2.23e-40 | 76 |
bone element | 1.01e-36 | 82 |
immune system | 1.39e-35 | 93 |
skeletal element | 2.59e-31 | 90 |
skeletal system | 9.63e-27 | 100 |
lateral plate mesoderm | 1.29e-16 | 203 |
adult organism | 3.62e-13 | 114 |
musculoskeletal system | 4.16e-12 | 167 |
mesoderm | 3.49e-09 | 315 |
mesoderm-derived structure | 3.49e-09 | 315 |
presumptive mesoderm | 3.49e-09 | 315 |