FFCP PHASE1:Hg19::chr1:54411715..54411760,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=115353 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28792 | |||
|TSSclassifier=strong | |||
|UniProt=A6NL66,Q9Y546 | |||
|association_with_transcript=0bp_to_ENST00000371368,ENST00000371370_5end | |||
|description=CAGE_peak_3_at_LRRC42_5end | |||
|id=chr1:54411715..54411760,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!2.26e-11!143;DOID:305!4.49e-09!106;DOID:14566!4.86e-07!239;DOID:162!7.43e-07!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.06e-09,143;DOID:305,2.45e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000924!5.58e-09!173;UBERON:0006601!5.58e-09!173;UBERON:0004121!2.59e-08!169;UBERON:0000073!1.89e-07!94;UBERON:0001016!1.89e-07!94;UBERON:0005743!6.90e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.38e-07,171;UBERON:0000924,2.38e-07,171;UBERON:0006601,2.38e-07,171 | |||
|phase1_expression=0.363356758541113,0.642301571672949,0.986680828671798,1.0007329835313,1.34088328328186,0,5.06599756336621,0.631719873426831,0.261185628199839,0.491467873003018,1.39560233594486,2.18441372130172,1.84636884759917,0.618831764800233,0.331397375727916,0.672325146451775,3.01347264011988,0.730310090387373,1.95173119516203,0.984968464614303,1.22400414746552,1.88072832886853,0.572471974262113,0.684372125364421,0.502170558379211,1.68109492645493,1.47781061009902,2.04648031415566,0.393364276848904,1.15148819429164,1.23852898652861,0,0.30120591877825,0.739508020333575,0.542270404062111,0.142169232487422,1.76160263600908,0,0.401088894940283,0.868043482863407,0.671746422719773,0,0.257575567634187,0.581592955118259,0,0.727752183563449,0.464858073811369,0.822335776043652,0.309706370895104,0.575384784644301,0.512321413058201,0.47296445977717,1.37898272294647,0,0,0.941211697713023,0.545812300115692,0,0.918251677112708,0.320929027076094,1.27867425159808,0.659702600373432,0.199463657621632,0.426224750532694,1.16083695451434,0.56738522469114,0.622822248995575,0.502497330513487,1.5644487552606,0.868755378820466,1.81619850790011,0.368277635987565,0.316462387440884,0.422510572623884,1.70083439972035,0,0.44931452458598,0.750884464207532,0.64290234678832,0.570025487482497,0.39783335439818,0.547992461293902,3.51992488922645,0,0,0.426730222566507,0.400395987036012,0,0,0,0,1.17447437874188,0.382273228125229,1.32171328579026,0.560508562981536,0.263384084775077,1.57367816091066,0.393010762749165,1.43921049299656,0,1.30368906653436,0.473447805734733,1.94826728407911,0.779873198196215,0,0.221533894583621,0.541607727530031,0.512365278902701,1.43065282315866,0.328875809207352,1.38175008892924,0,1.03800594213442,1.07016331235885,0,0.226618685395132,1.14966148080576,1.03088233644789,0,0.318565414324097,0,0,0.752875595388864,0.511946444617674,0,0.236777252044017,1.64225599384209,0.604820229674197,0.802320587350522,0.724122019413995,0,0,0.895037932904712,0.722878304769133,1.50401373190767,0.579386075843295,0,1.45990461090791,1.13441780596881,1.55210578223795,0.702678285545008,2.16115474571226,1.45718115317017,2.59549109949101,0.324547393654683,0.870648686496336,0.797747763113191,2.14641561874808,1.71598473234038,0.371457501329565,0.39752481473341,0,1.04142150482278,0.56530794192401,0.419499436209906,0,0.626984899610432,1.03366703667732,0.35576626268671,0,0.402829317109147,0,0,0,1.62028389576352,0.0892997282840798,0.673588117878509,0.450445921933289,0,0,0.549605231791222,1.31780417436063,0,0.436094052142534,0.993943903390637,1.13967460498122,0.397227542439656,0.860509862246441,1.77334191099179,1.12135520028461,0,0.98667019366864,1.24484414159907,0.808264032418128,0.817309515567294,0.908144565869588,2.30470369792,1.17160715916898,0.624320153660641,0,0.747243402759005,0.469737994575059,0.971237666208789,0.702254033511242,0.61246251376468,0.982674538494144,1.44656093646072,1.18800285728205,1.48360157567134,0.910161361938026,0.718618141816238,0.168336113954066,1.25118519871964,0.277064115484183,0.877955241761676,0.919463387397059,2.10333282469236,0.226864366320042,0.538168907066586,0.640672166455702,0.211931901159562,1.50045548042201,0.92747276314595,1.03056216018252,1.11670113798954,0.168776332241266,0.68205903612839,0.504867548488229,1.01254888506529,0.646584227275248,0,0.503760491138201,0.339121184620975,1.15956511897978,0.272746120590835,0.573609190778008,7.19644866164613,8.34937540425357,6.85544262930159,4.35376431064556,7.31730467539322,4.01475094983413,0,1.28648187638577,0,1.85747171212792,2.16563844500876,1.0647612003586,0.337169380156203,0.241011029883482,0.55146986366197,0.871517776369625,0.474541238222193,0.539325232640658,0.588664395376038,0.38474715694639,0.738155454624648,1.40241773803446,0.8231480226628,0,1.26755034821831,0,0.590789906681404,0.882926198829301,0.368965315629341,0.686271241194102,0.439001141634502,1.1240175325762,0.703702806881416,0.370353780634118,1.3032332212413,1.03993478527958,0,1.85488647960123,1.29149563659404,0.144366447761074,1.85194205030644,1.33177906564219,0,0.858486162094873,0.246217006087397,0,0.445893486866185,0,1.00789276919316,0.425325291727159,2.05984602216551,0.871901815541886,0.383382679165211,0,0.968532774145487,1.65862492432618,1.00883967391873,1.51490920111656,0.444485260045183,1.90994212779139,0,0,0.308482478109971,0.300343057843917,0.571652865261156,0.897048674762886,0.87192013766656,0.51336800074665,0.646358578788889,3.57656445851882,0.845302752556,0.531876233169741,2.08014873822732,0.514414748524284,0,0.799266537048298,0.57191197463259,3.7983512377401,2.46972101034231,0.325736184293735,1.06617584622764,0.791951872933429,0.904318131178758,0.871533458600294,1.3996218765488,1.2162378064119,0,0,0,2.29723871668228,1.42636905040718,0.289562613335158,0.61642896765115,0.358121926479791,0.336255431980582,0.197030760201927,0.431255149719035,0.77005821767849,1.27047312111232,1.30139853857622,0,2.34522771468088,4.46557126157214,0.749007023947182,0,0,0.981531933753119,1.00034104211935,1.35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| |||
|short_description=p3@LRRC42 | |||
}} |
Revision as of 18:36, 10 January 2014
Short description: | p3@LRRC42 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LRRC42_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000371368, ENST00000371370_5end |
EntrezGene: | LRRC42 |
HGNC: | 28792 |
UniProt: | A6NL66Q9Y546 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.38e-07 | 171 |
ectoderm | 2.38e-07 | 171 |
presumptive ectoderm | 2.38e-07 | 171 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.06e-09 | 143 |
carcinoma | 2.45e-07 | 106 |