FFCP PHASE1:Hg19::chr1:20915409..20915492,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=978 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1712 | |||
|TSSclassifier=strong | |||
|UniProt=P32320 | |||
|association_with_transcript=0bp_to_ENST00000375071,NM_001785,uc001bdk.2,uc001bdl.2,uc009vpv.2_5end | |||
|description=CAGE_peak_2_at_CDA_5end | |||
|id=chr1:20915409..20915492,+ | |||
|ontology_enrichment_celltype=CL:0000766!3.02e-30!76;CL:0002194!1.07e-29!63;CL:0000576!1.07e-29!63;CL:0000040!1.07e-29!63;CL:0000559!1.07e-29!63;CL:0000860!1.05e-27!45;CL:0002009!1.50e-27!65;CL:0002057!2.61e-26!42;CL:0000839!2.34e-24!70;CL:0000557!2.29e-23!71;CL:0000763!7.67e-13!112;CL:0000049!7.67e-13!112;CL:0002087!1.25e-09!119;CL:0000738!3.85e-09!140;CL:0002031!6.07e-07!124;CL:0000094!9.87e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.84e-22;33!CL:0002057;1.84e-22;33!CL:0000473;2.25e-22;39!CL:0000234;2.25e-22;39!CL:0000576;1.93e-17;48!CL:0000766;2.30e-14;69!CL:0000094;1.50e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.30e-34,48;CL:0000234,2.30e-34,48;CL:0000766,4.31e-33,72;CL:0002194,8.12e-32,59;CL:0000576,8.12e-32,59;CL:0000040,8.12e-32,59;CL:0000559,8.12e-32,59;CL:0000860,3.55e-30,42;CL:0002057,3.55e-30,42;CL:0002009,7.81e-30,61;CL:0000557,1.35e-25,67;CL:0000839,1.87e-25,66;CL:0000763,7.68e-16,108;CL:0000049,7.68e-16,108;CL:0000738,1.57e-10,136;CL:0002087,1.85e-10,115;CL:0000094,1.53e-07,8;CL:0002031,2.20e-07,120;CL:0002393,5.27e-07,9;CL:0002397,5.27e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;6.65e-22;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.89e-23!102;UBERON:0003061!5.89e-23!102;UBERON:0002193!3.51e-21!112;UBERON:0002371!5.04e-20!80;UBERON:0001474!4.31e-16!86;UBERON:0002405!6.98e-16!115;UBERON:0000926!2.71e-13!448;UBERON:0004120!2.71e-13!448;UBERON:0006603!2.71e-13!448;UBERON:0004765!3.71e-13!101;UBERON:0001434!3.71e-13!101;UBERON:0003081!6.20e-11!216;UBERON:0000468!2.83e-10!659;UBERON:0000062!3.88e-10!511;UBERON:0000467!5.75e-10!625;UBERON:0000480!6.49e-10!626;UBERON:0002050!1.22e-08!605;UBERON:0005423!1.22e-08!605;UBERON:0000923!1.89e-08!604;UBERON:0005291!1.89e-08!604;UBERON:0006598!1.89e-08!604;UBERON:0002532!1.89e-08!604;UBERON:0000922!2.07e-08!612;UBERON:0000479!2.55e-08!787;UBERON:0002204!3.23e-08!167;UBERON:0001737!8.60e-08!9;UBERON:0007023!2.52e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;8.88e-09;9!UBERON:0001557;8.88e-09;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.32e-25,98;UBERON:0003061,5.32e-25,98;UBERON:0002193,6.48e-23,108;UBERON:0002371,2.90e-21,76;UBERON:0002405,8.56e-18,93;UBERON:0001474,8.95e-18,82;UBERON:0004765,8.93e-17,90;UBERON:0001434,1.01e-13,100;UBERON:0003081,6.33e-09,203;UBERON:0001737,9.17e-09,9;UBERON:0005423,1.71e-07,581;UBERON:0002050,5.12e-07,564;UBERON:0000926,9.87e-07,315;UBERON:0004120,9.87e-07,315;UBERON:0006603,9.87e-07,315 | |||
|phase1_expression=1.09007027562334,3.63970890614671,1.40954404095971,8.00586386825043,2.23480547213644,6.10636966870258,2.53299878168311,0,0.261185628199839,4.42321085702716,6.28021051175185,6.334799791775,10.2869121509097,0.247532705920093,0,0.672325146451775,0.602694528023977,0.730310090387373,0,0,0,0,0,0,0,0,0,0,36.1895134700992,26.1003990706105,74.3117391917165,5.51652734687356,6.024118375565,2.9580320813343,0,0,0,48.7515959508052,54.7486341593487,57.9419024811324,1.79132379391939,7.12566065241755,3.8636335145128,66.1561986447019,51.3911283416781,65.2551124595226,69.263852997894,45.6396355704227,59.1539168409648,55.2369393258529,57.6361589690476,74.2554201850158,71.0176102317434,52.2842593702899,83.9644216884919,71.1556043471046,38.2068610080984,46.0683143112423,68.8688757834531,54.878863630012,47.9502844349281,48.1582898272606,50.6637690358945,58.8190155735118,74.0033558502889,42.5538918518355,46.0888464256725,58.7921876700779,68.3142623130464,79.4911171620727,70.2263423054708,54.8733677621471,57.596154514241,44.3636101255078,34.6545008943021,42.9800223292171,107.610828638342,96.5637420970886,92.5779379375182,37.0516566863623,26.6548347446781,31.9662269088109,0,2.18455444504853,0,2.98711155796555,0,0.574752439954483,0.661044872784862,0,0,1.17447437874188,0.382273228125229,0,7.8471198817415,0.263384084775077,0,0,0.411202997999018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,1.59282707162048,0,0,2.25862678616659,0.76791966692651,4.99722906209383,6.39298580518846,0.821127996921047,0,0,0,0,0,0,20.9634708383048,0.50133791063589,13.7604193012783,1.5905718941022,10.705967146658,0,0,0.175669571386252,1.0478326039817,7.65020105414339,2.96627554227544,6.81549526674835,8.18409765306556,23.7994749328769,1.43094374583205,0.571994910780128,1.11437250398869,0.198762407366705,0,0,0,0.419499436209906,0,0,0,0,0.66944122552934,0,0,0.24406205754817,0,0,0.0892997282840798,0.673588117878509,0.450445921933289,0,0,0.183201743930407,175.267955189964,127.967487168947,10.9023513035634,0.496971951695318,0,0.926864265692532,0,0.709336764396714,1.68203280042692,0,5.92002116201184,0,0,0,0.151357427644931,0,0.234321431833797,0.312160076830321,0,0.597794722207204,0.352303495931295,0.323745888736263,0.140450806702248,0,0,0,0,0,4.55080680969013,14.3723628363248,0,0,0,0,0,0,0.113432183160021,0,0,3.60284231971255,0.300091096084402,0.618315175430633,2.57640540045629,3.35010341396862,3.03797398034279,1.94874010322397,1.51460264546469,1.47279837827679,0.323292113637624,0,0.10075209822764,3.22165125389926,15.654129106227,14.1827982707234,4.58887352622406,0.243947412259191,0.662648841607426,0.69716365721711,0.621966330092223,1.7662459561294,1.09493207722749,0,1.28648187638577,0,9.28735856063958,2.16563844500876,117.951879639724,123.40399313717,83.3898163396848,119.77925438738,127.67735423815,81.146551735995,132.134681996961,134.411703610862,100.803755119954,0.738155454624648,0,0.4115740113314,1.47008711385542,21.5483559197112,13.7595810334868,12.4065880403095,0,0.491953754172454,0,19.5355508027354,3.37205259772859,6.73544115157927,1.11106134190236,0,0,0,0,0,0,0.462985512576611,0,0,0,35.7014658826726,71.6053051326067,65.9922360561953,35.6188569149753,54.5941916646293,26.3701680870839,0.179117045405697,2.3250715081117,6.9008882249738,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,7.15312891703765,0.845302752556,0,0,0.771622122786426,0,1.0656887160644,0.142977993658148,2.17048642156577,1.64648067356154,1.62868092146868,0,1.58390374586686,0.301439377059586,2.61460037580088,0.99972991182057,62.0281281270071,45.7053953203235,46.383466686267,0.239624855491583,0,0,0.723906533337896,0,0.537182889719687,0.224170287987055,0.394061520403854,0.215627574859517,2.56686072559497,0,0,0,0,0,126.582187047074,173.513646338334,253.207878709418,0,0.500170521059677,0,0,0,0.473107245101804,0,0,2.27407504055985,1.03473071292505,0,0.184369168541703,0.0868836144680828,0.195801157462741,0,29.36105970945,40.5542697539,21.6656942340992,0.303127571446259,6.65741758041988,0,3.2254015016441,5.21770709179412,6.17452207752762,3.97231362692673,5.62877973973374,13.1900215337758,11.8734453155993,1.3878872442239,0.887808626565635,1.47828880824856,7.78881643775432,1.74315567689939,0.241718899183244,24.4617893770008,6.26150724764095,0.68888668898764,0.910455840033585,2.09799063935079,2.25599806453706,1.07821471946181,1.56869953835371,0,1.79437769117889,2.27466768141793,1.02056223165909,0.863663664408557,4.62681758070868,0.541892875087706,1.00337954770971,9.68529837571146,16.6215201785745,1.79099803777743,0.438519753291869,0.522870902049801,0,0.328014645699706,0,9.37673205994273,0,0,7.46545199395024,5.20048196829217,8.03419649220798,0,0,0,0.827019434907183,0.966782203814463,0.580066775656914,0.426133137080504,0.178064071293475,3.14041339185858,2.30628080838127,1.14851441245126,2.73126008309985,0,0.31481234683064,0.6970372701606,0,1.06461206063404,0.869932992075073,0,0.143124886741991,0.372158369359667,0.949138274156178,2.66882271493355,1.535386747868,0,0.9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| |||
|short_description=p2@CDA | |||
}} |
Revision as of 16:48, 10 January 2014
Short description: | p2@CDA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CDA_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000375071, NM_001785, uc001bdk.2, uc001bdl.2, uc009vpv.2_5end |
EntrezGene: | CDA |
HGNC: | 1712 |
UniProt: | P32320 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.30e-34 | 48 |
phagocyte | 2.30e-34 | 48 |
myeloid leukocyte | 4.31e-33 | 72 |
monopoietic cell | 8.12e-32 | 59 |
monocyte | 8.12e-32 | 59 |
monoblast | 8.12e-32 | 59 |
promonocyte | 8.12e-32 | 59 |
classical monocyte | 3.55e-30 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.55e-30 | 42 |
macrophage dendritic cell progenitor | 7.81e-30 | 61 |
granulocyte monocyte progenitor cell | 1.35e-25 | 67 |
myeloid lineage restricted progenitor cell | 1.87e-25 | 66 |
myeloid cell | 7.68e-16 | 108 |
common myeloid progenitor | 7.68e-16 | 108 |
leukocyte | 1.57e-10 | 136 |
nongranular leukocyte | 1.85e-10 | 115 |
granulocyte | 1.53e-07 | 8 |
hematopoietic lineage restricted progenitor cell | 2.20e-07 | 120 |
intermediate monocyte | 5.27e-07 | 9 |
CD14-positive, CD16-positive monocyte | 5.27e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.32e-25 | 98 |
blood island | 5.32e-25 | 98 |
hemolymphoid system | 6.48e-23 | 108 |
bone marrow | 2.90e-21 | 76 |
immune system | 8.56e-18 | 93 |
bone element | 8.95e-18 | 82 |
skeletal element | 8.93e-17 | 90 |
skeletal system | 1.01e-13 | 100 |
lateral plate mesoderm | 6.33e-09 | 203 |
larynx | 9.17e-09 | 9 |
developing anatomical structure | 1.71e-07 | 581 |
embryonic structure | 5.12e-07 | 564 |
mesoderm | 9.87e-07 | 315 |
mesoderm-derived structure | 9.87e-07 | 315 |
presumptive mesoderm | 9.87e-07 | 315 |