FFCP PHASE1:Hg19::chr1:205325994..205326016,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55220 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25573 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000491471_5end | |||
|description=CAGE_peak_4_at_KLHDC8A_5end | |||
|id=chr1:205325994..205326016,- | |||
|ontology_enrichment_celltype=CL:0002319!1.44e-08!25;CL:0002605!6.89e-08!3;CL:0000047!7.39e-08!8 | |||
|ontology_enrichment_celltype_v019=CL:0000047;3.46e-21;2!CL:0002319;8.18e-13;25!CL:0000540;1.80e-07;6!CL:0000404;1.80e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,4.20e-20,8;CL:0002319,8.18e-13,25;CL:0000133,1.71e-09,59;CL:0000221,1.17e-07,72;CL:0000540,1.74e-07,6;CL:0000031,1.74e-07,6;CL:0000404,1.74e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000031;1.80e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.45e-45!82;UBERON:0005743!3.60e-45!86;UBERON:0000073!5.85e-42!94;UBERON:0001016!5.85e-42!94;UBERON:0001049!7.27e-41!57;UBERON:0005068!7.27e-41!57;UBERON:0006241!7.27e-41!57;UBERON:0007135!7.27e-41!57;UBERON:0002780!1.24e-40!41;UBERON:0001890!1.24e-40!41;UBERON:0006240!1.24e-40!41;UBERON:0003080!1.78e-39!42;UBERON:0000955!1.12e-37!69;UBERON:0006238!1.12e-37!69;UBERON:0002616!1.53e-36!59;UBERON:0001893!1.20e-33!34;UBERON:0002020!2.78e-33!34;UBERON:0003528!2.78e-33!34;UBERON:0002791!6.09e-32!33;UBERON:0001869!2.51e-30!32;UBERON:0003075!5.48e-29!86;UBERON:0007284!5.48e-29!86;UBERON:0002346!5.99e-29!90;UBERON:0007023!6.51e-28!115;UBERON:0003056!1.14e-26!61;UBERON:0000956!1.49e-26!25;UBERON:0000203!1.49e-26!25;UBERON:0000924!3.71e-25!173;UBERON:0006601!3.71e-25!173;UBERON:0004121!7.88e-25!169;UBERON:0000033!7.49e-23!123;UBERON:0000153!2.05e-22!129;UBERON:0007811!2.05e-22!129;UBERON:0002619!5.53e-21!22;UBERON:0001950!2.51e-17!20;UBERON:0000200!2.19e-12!6;UBERON:0003296!5.04e-10!4;UBERON:0010133!5.04e-10!4;UBERON:0001871!2.63e-09!7;UBERON:0000025!3.41e-09!194;UBERON:0001894!2.73e-08!7;UBERON:0006222!2.73e-08!7;UBERON:0002308!3.39e-08!9;UBERON:0000125!3.39e-08!9;UBERON:0000349!1.16e-07!5;UBERON:0004111!1.25e-07!241;UBERON:0000062!1.28e-07!511;UBERON:0000922!2.39e-07!612;UBERON:0002050!3.81e-07!605;UBERON:0005423!3.81e-07!605;UBERON:0002771!7.15e-07!3;UBERON:0000064!8.04e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0005795;3.63e-11;1!UBERON:0000922;6.54e-08;49!UBERON:0002791;6.44e-07;32!UBERON:0001869;7.48e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.36e-14,89;UBERON:0001017,6.90e-13,81;UBERON:0004121,1.17e-07,171;UBERON:0000924,1.17e-07,171;UBERON:0006601,1.17e-07,171;UBERON:0002791,1.67e-07,32;UBERON:0001869,1.67e-07,32;UBERON:0003528,4.58e-07,34;UBERON:0002020,4.58e-07,34;UBERON:0001893,4.58e-07,34 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71741592278634,0.410623275218653,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.1801634657884,1.30139853857622,1.54657762555539,1.67516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0.276283915531148,0,0.613612095012929,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,3.99227596002388,0,0,0,0,0,0,1.03423011972439,0,0.173624994933292,0,1.80894657938112,0,0,0.886642856860642,0.438770794307945,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337005664903385,0,0.234264445725339,0,0,0,0,0,2.44858209304392,0,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.189932387867636,0,0,0.213452994739353,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.681017030557878,0,0,0,0,0,0.303747783290123,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.244052529803926,0.1251909307065,0,0.332787154610557,0.496771223531068,0.138348634936231,0,0,0,0,0,1.44921028610825,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0.465788870628778,0,0,0,0,0,0,0.181848659202559,0,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,8.08686085475114,0,0,0,0.425149840203366,0,0,0,0,0,0,0,0.256916900385838,0,0,0,5.29350562065608,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,8.57397743181533,0,0,0,0,0,0.270150338473579,0,0,0.253663240775627,1.64092442705466,0.548257766857182,0,0,0,0.535701835878287,0.672567444437648,0.606965604236632,0.682986574053893,0,0,0,0,0.0657727735628491,0,0,0,0.628462359664008,0,0.913158720509496,0,0,0.571812353413251,0,2.20858708199438,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0.233939463462106,0.198950775161368,0,0,0,0,0.154348316215889,0.437119121007915,0,0,0,0,0,1.2679671827502,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.135982980381829,6.10890966476528,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0.803892390468535,0,0,0,0,0,0.0620747142958579,0,0,0,0,0.342233301085281,0,0.215166616178029,0.332660356546013,0,0,0,0,0,0.122241444182866,1.62758471326295,0,0,0 | |||
|short_description=p4@KLHDC8A | |||
}} |
Revision as of 23:42, 10 January 2014
Short description: | p4@KLHDC8A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_KLHDC8A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000491471_5end |
EntrezGene: | KLHDC8A |
HGNC: | 25573 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 4.20e-20 | 8 |
neural cell | 8.18e-13 | 25 |
neurectodermal cell | 1.71e-09 | 59 |
ectodermal cell | 1.17e-07 | 72 |
neuron | 1.74e-07 | 6 |
neuroblast | 1.74e-07 | 6 |
electrically signaling cell | 1.74e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
nervous system | 8.36e-14 | 89 |
central nervous system | 6.90e-13 | 81 |
ectoderm-derived structure | 1.17e-07 | 171 |
ectoderm | 1.17e-07 | 171 |
presumptive ectoderm | 1.17e-07 | 171 |
regional part of telencephalon | 1.67e-07 | 32 |
cerebral hemisphere | 1.67e-07 | 32 |
brain grey matter | 4.58e-07 | 34 |
gray matter | 4.58e-07 | 34 |
telencephalon | 4.58e-07 | 34 |