FFCP PHASE1:Hg19::chr1:158815588..158815607,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4332 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7183 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-83bp_to_ENST00000438394_5end | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_6_at_MNDA_5end | |||
|id=chr1:158815588..158815607,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.86e-70!76;CL:0002009!3.51e-68!65;CL:0002194!8.48e-68!63;CL:0000576!8.48e-68!63;CL:0000040!8.48e-68!63;CL:0000559!8.48e-68!63;CL:0000763!1.46e-64!112;CL:0000049!1.46e-64!112;CL:0002057!1.69e-62!42;CL:0000557!3.72e-61!71;CL:0000839!1.50e-59!70;CL:0000860!1.72e-57!45;CL:0000037!3.08e-51!172;CL:0000566!3.08e-51!172;CL:0000738!2.49e-50!140;CL:0002032!2.01e-49!165;CL:0000837!2.01e-49!165;CL:0000988!2.87e-47!182;CL:0002087!7.19e-46!119;CL:0002031!3.69e-40!124;CL:0000134!1.18e-14!358;CL:0002320!5.43e-14!365;CL:0000219!1.11e-11!390;CL:0002393!7.33e-10!9;CL:0002397!7.33e-10!9;CL:0000048!1.93e-09!430;CL:0000094!2.05e-09!8;CL:0000723!4.73e-09!436;CL:0000034!1.50e-08!444;CL:0000775!5.96e-08!3;CL:0000235!8.92e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.74e-63;33!CL:0002057;5.74e-63;33!CL:0000473;7.44e-56;39!CL:0000234;7.44e-56;39!CL:0000576;4.20e-39;48!CL:0000766;9.39e-32;69!CL:0000763;5.23e-19;100!CL:0000775;5.66e-14;3!CL:0000094;5.21e-13;8!CL:0000738;9.08e-11;136!CL:0002393;3.79e-10;6!CL:0002397;3.79e-10;6!CL:0000081;2.28e-09;11!CL:0002087;4.80e-09;104!CL:0000771;8.83e-09;2!CL:0000988;6.06e-08;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,8.85e-77,48;CL:0000234,8.85e-77,48;CL:0000860,4.21e-72,42;CL:0002057,4.21e-72,42;CL:0000766,2.35e-70,72;CL:0002194,6.24e-64,59;CL:0000576,6.24e-64,59;CL:0000040,6.24e-64,59;CL:0000559,6.24e-64,59;CL:0002009,1.29e-61,61;CL:0000839,1.99e-56,66;CL:0000557,1.76e-55,67;CL:0000763,1.39e-52,108;CL:0000049,1.39e-52,108;CL:0000738,2.03e-33,136;CL:0002032,2.11e-32,161;CL:0000837,2.11e-32,161;CL:0000037,1.11e-30,168;CL:0002087,2.92e-29,115;CL:0000988,1.14e-28,177;CL:0002031,9.98e-28,120;CL:0000775,5.66e-14,3;CL:0000094,4.72e-13,8;CL:0000134,7.76e-10,354;CL:0002320,1.80e-09,361;CL:0000081,2.13e-09,11;CL:0000771,7.54e-09,2;CL:0000219,3.42e-08,386;CL:0002393,7.88e-07,9;CL:0002397,7.88e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.11e-53;42!CL:0000049;2.15e-18;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.57e-64!102;UBERON:0003061!5.57e-64!102;UBERON:0002193!7.36e-59!112;UBERON:0002371!1.39e-52!80;UBERON:0001474!7.36e-48!86;UBERON:0004765!3.32e-40!101;UBERON:0001434!3.32e-40!101;UBERON:0002405!1.25e-33!115;UBERON:0003081!1.08e-21!216;UBERON:0002204!2.54e-19!167;UBERON:0000178!6.81e-18!15;UBERON:0000179!6.81e-18!15;UBERON:0000463!6.81e-18!15;UBERON:0002384!1.07e-13!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.15e-21;15!UBERON:0000179;9.15e-21;15!UBERON:0000463;9.15e-21;15!UBERON:0002390;3.87e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.24e-62,98;UBERON:0003061,4.24e-62,98;UBERON:0002193,1.67e-58,108;UBERON:0002371,4.51e-48,76;UBERON:0001474,5.01e-44,82;UBERON:0002405,1.54e-40,93;UBERON:0004765,1.84e-39,90;UBERON:0001434,8.95e-35,100;UBERON:0003081,2.18e-25,203;UBERON:0000178,1.08e-20,15;UBERON:0000179,1.08e-20,15;UBERON:0000463,1.08e-20,15;UBERON:0002204,8.61e-18,167;UBERON:0000926,4.17e-13,315;UBERON:0004120,4.17e-13,315;UBERON:0006603,4.17e-13,315;UBERON:0002384,5.63e-09,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0.0787107813136792,0,0,0.154816123316076,0,0,0,0,0,0,0,0.200544447470142,1.08505435357926,0.671746422719773,0,0.257575567634187,3.63495596948912,1.13362783106643,0.970336244751265,2.78914844286822,3.28934310417461,0.619412741790207,2.58923153089935,4.61089271752381,1.18241114944293,2.06847408441971,2.5819387343353,0,2.07066573496865,0.818718450173537,0.674170453335254,1.83650335422542,0,3.83602275479425,2.30895910130701,6.38283704389222,4.26224750532694,4.06292934080018,2.8369261234557,3.73693349397345,4.77372463987812,8.34372669472322,0.434377689410233,1.81619850790011,1.10483290796269,0.632924774881769,1.90129757680748,1.4882300997553,1.46761051855863,3.25753030324836,3.45406853535464,3.85741408072992,0,0.59675003159727,0.365328307529268,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,1.99436940778298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0.936017060556951,0.594524649154913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,2.51128545716063,8.43335757932127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,52.4304916763028,77.7819793930465,15.3333739971333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.55213326462519,6.117097657139,10.2536493691349,4.2881719582402,5.34770955012053,1.29694662238543,1.08006287447623,7.9312517629427,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0.280797178113459,0.228234679033192,4.38703708164465,0,0,0.1605880751037,0,0.425846237690326,1.03051603426729,0,0.447352215784832,0.333698283423817,3.90776190804081,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0.0986434056369336,4.7896618469388,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533034776018635,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0.828478110694391,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0.960225567247268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655678681511872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |||
|short_description=p6@MNDA | |||
}} |
Revision as of 21:36, 10 January 2014
Short description: | p6@MNDA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_MNDA_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | -83bp_to_ENST00000438394_5end |
EntrezGene: | MNDA |
HGNC: | 7183 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 8.85e-77 | 48 |
phagocyte | 8.85e-77 | 48 |
classical monocyte | 4.21e-72 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.21e-72 | 42 |
myeloid leukocyte | 2.35e-70 | 72 |
monopoietic cell | 6.24e-64 | 59 |
monocyte | 6.24e-64 | 59 |
monoblast | 6.24e-64 | 59 |
promonocyte | 6.24e-64 | 59 |
macrophage dendritic cell progenitor | 1.29e-61 | 61 |
myeloid lineage restricted progenitor cell | 1.99e-56 | 66 |
granulocyte monocyte progenitor cell | 1.76e-55 | 67 |
myeloid cell | 1.39e-52 | 108 |
common myeloid progenitor | 1.39e-52 | 108 |
leukocyte | 2.03e-33 | 136 |
hematopoietic oligopotent progenitor cell | 2.11e-32 | 161 |
hematopoietic multipotent progenitor cell | 2.11e-32 | 161 |
hematopoietic stem cell | 1.11e-30 | 168 |
nongranular leukocyte | 2.92e-29 | 115 |
hematopoietic cell | 1.14e-28 | 177 |
hematopoietic lineage restricted progenitor cell | 9.98e-28 | 120 |
neutrophil | 5.66e-14 | 3 |
granulocyte | 4.72e-13 | 8 |
mesenchymal cell | 7.76e-10 | 354 |
connective tissue cell | 1.80e-09 | 361 |
blood cell | 2.13e-09 | 11 |
eosinophil | 7.54e-09 | 2 |
motile cell | 3.42e-08 | 386 |
intermediate monocyte | 7.88e-07 | 9 |
CD14-positive, CD16-positive monocyte | 7.88e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.24e-62 | 98 |
blood island | 4.24e-62 | 98 |
hemolymphoid system | 1.67e-58 | 108 |
bone marrow | 4.51e-48 | 76 |
bone element | 5.01e-44 | 82 |
immune system | 1.54e-40 | 93 |
skeletal element | 1.84e-39 | 90 |
skeletal system | 8.95e-35 | 100 |
lateral plate mesoderm | 2.18e-25 | 203 |
blood | 1.08e-20 | 15 |
haemolymphatic fluid | 1.08e-20 | 15 |
organism substance | 1.08e-20 | 15 |
musculoskeletal system | 8.61e-18 | 167 |
mesoderm | 4.17e-13 | 315 |
mesoderm-derived structure | 4.17e-13 | 315 |
presumptive mesoderm | 4.17e-13 | 315 |
connective tissue | 5.63e-09 | 371 |