FFCP PHASE1:Hg19::chr1:152670795..152670806,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=353139 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29469 | |||
|TSSclassifier=strong | |||
|UniProt=Q5TA79 | |||
|association_with_transcript=-33bp_to_ENST00000368779,NM_178428,uc001faj.2_5end | |||
|coexpression_cluster_id=C530 | |||
|description=CAGE_peak_2_at_LCE2A_5end | |||
|id=chr1:152670795..152670806,+ | |||
|ontology_enrichment_celltype=CL:0002334!6.29e-16!12;CL:0000346!8.91e-14!3;CL:1000428!8.91e-14!3;CL:0002582!2.24e-13!3;CL:0002559!1.94e-10!4;CL:0000515!4.48e-10!4;CL:0000055!7.42e-10!180;CL:0000057!1.42e-08!75;CL:0002573!8.98e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000346;4.64e-20;3!CL:1000428;4.64e-20;3!CL:0002573;9.52e-20;2!CL:0002601;8.02e-16;1!CL:0000228;1.92e-15;1!CL:0002574;1.92e-15;1!CL:0002372;1.92e-15;1!CL:0000056;4.54e-15;4!CL:0002559;1.95e-12;5!CL:0000680;5.15e-09;7!CL:0002583;2.23e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000346,4.43e-20,3;CL:1000428,4.43e-20,3;CL:0002573,8.67e-20,2;CL:0002601,7.46e-16,1;CL:0000228,1.54e-15,1;CL:0002372,1.54e-15,1;CL:0002574,2.75e-15,1;CL:0000515,4.23e-15,4;CL:0002559,1.89e-12,5;CL:0002583,3.08e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000515;4.54e-15;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3112;5.56e-16;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,5.56e-16,1 | |||
|ontology_enrichment_uberon=UBERON:0000412!8.91e-14!3;UBERON:0001992!8.91e-14!3;UBERON:0002199!1.71e-10!45;UBERON:0002416!1.71e-10!45;UBERON:0002073!1.94e-10!4;UBERON:0005086!1.94e-10!4;UBERON:0002097!4.75e-10!40;UBERON:0001003!2.80e-07!14;UBERON:0007376!2.80e-07!14;UBERON:0007383!2.80e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0000412;4.64e-20;3!UBERON:0001992;4.64e-20;3!UBERON:0002073;1.95e-12;5!UBERON:0002067;2.64e-07;9!UBERON:0000010;3.34e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000412,4.43e-20,3;UBERON:0001992,4.43e-20,3;UBERON:0002073,1.89e-12,5;UBERON:0005086,1.89e-12,5;UBERON:0002067,2.60e-07,9;UBERON:0004016,2.60e-07,9;UBERON:0010083,2.60e-07,9;UBERON:0000010,3.24e-07,8;UBERON:0002329,5.72e-07,71;UBERON:0003059,5.72e-07,71;UBERON:0007282,5.72e-07,71;UBERON:0004290,5.72e-07,71;UBERON:0009618,5.72e-07,71;UBERON:0003077,7.22e-07,72;UBERON:0007285,7.22e-07,72;UBERON:0007524,9.07e-07,73 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.554128230968366,0,0,0,0,0.179389635688862,0,0,0,0.206105058476878,0,0,0,0.0974370051611986,0.252433774244115,0.184099797284599,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69348596989448,0.643240938192885,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0.797814349754612,2.08014873822732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,1.30303176000821,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,1.21637060255316,0,0,0,0,0,0,0,0,0.248107807818777,0.306923946576125,0,0.128139149255701,0,0,0,0,1.06537035187876,0.410635780069046,1.55776328755086,0.348631135379878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0.929691098594572,0,0,0,0,1.73986598415015,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.83808851256478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0.794858446811959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10961172300523,0,0,0,0,0,0,0,0.318593534327405,0,0,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,29.8064889868376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53831600949735,1.27820107138737,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@LCE2A | |||
}} |
Revision as of 20:56, 10 January 2014
Short description: | p2@LCE2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LCE2A_5end |
Coexpression cluster: | C530_papillary_salivary_skin_Smooth_leiomyoma_lung_Keratinocyte |
Association with transcript: | -33bp_to_ENST00000368779, NM_178428, uc001faj.2_5end |
EntrezGene: | LCE2A |
HGNC: | 29469 |
UniProt: | Q5TA79 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hair follicle dermal papilla cell | 4.43e-20 | 3 |
stem cell of epidermis | 4.43e-20 | 3 |
Schwann cell | 8.67e-20 | 2 |
uterine smooth muscle cell | 7.46e-16 | 1 |
multinucleate cell | 1.54e-15 | 1 |
myotube | 1.54e-15 | 1 |
stromal cell of pancreas | 2.75e-15 | 1 |
skeletal muscle myoblast | 4.23e-15 | 4 |
hair follicle cell | 1.89e-12 | 5 |
subcutaneous preadipocyte | 3.08e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
dermal papilla | 4.43e-20 | 3 |
papillary layer of dermis | 4.43e-20 | 3 |
hair follicle | 1.89e-12 | 5 |
hair follicle placode | 1.89e-12 | 5 |
dermis | 2.60e-07 | 9 |
dermatome | 2.60e-07 | 9 |
future dermis | 2.60e-07 | 9 |
peripheral nervous system | 3.24e-07 | 8 |
somite | 5.72e-07 | 71 |
presomitic mesoderm | 5.72e-07 | 71 |
presumptive segmental plate | 5.72e-07 | 71 |
dermomyotome | 5.72e-07 | 71 |
trunk paraxial mesoderm | 5.72e-07 | 71 |
paraxial mesoderm | 7.22e-07 | 72 |
presumptive paraxial mesoderm | 7.22e-07 | 72 |
dense mesenchyme tissue | 9.07e-07 | 73 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 5.56e-16 | 1 |