FFCP PHASE1:Hg19::chr1:119837632..119837659,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C86 | |||
|description=CAGE_peak_at_chr1:119837632..119837659,+ | |||
|id=chr1:119837632..119837659,+ | |||
|ontology_enrichment_celltype=CL:0002322!2.48e-16!5;CL:0002253!4.09e-11!2;CL:0000039!5.26e-07!7;CL:0000586!5.26e-07!7;CL:0000181!9.50e-07!12;CL:0000417!9.50e-07!12;CL:0000668!9.50e-07!12;CL:0000414!9.50e-07!12;CL:0000412!9.50e-07!12;CL:0000182!9.50e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002253;1.15e-15;2!CL:0000322;8.99e-11;3!CL:0002563;1.70e-08;4!CL:0000082;5.84e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002253,1.15e-15,2;CL:0000322,8.99e-11,3;CL:0002563,1.70e-08,4;CL:0000082,5.84e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0001041;3.23e-09;30 | |||
|ontology_enrichment_disease=DOID:305!1.50e-12!106;DOID:5409!5.09e-12!4;DOID:1325!6.07e-12!7;DOID:3904!6.07e-12!7;DOID:3905!2.65e-09!9;DOID:3119!9.20e-09!14;DOID:0050687!3.10e-08!143;DOID:0050615!7.27e-08!16 | |||
|ontology_enrichment_disease_v019=DOID:0050619;1.33e-29;1!DOID:1357;1.33e-29;1!DOID:1325;3.15e-17;7!DOID:3904;3.15e-17;7!DOID:0050615;1.06e-16;16!DOID:3910;1.78e-15;2!DOID:3905;1.23e-13;9!DOID:1324;1.42e-08;15!DOID:5409;1.82e-08;4!DOID:3908;5.70e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:0050619,1.33e-29,1;DOID:1357,1.33e-29,1;DOID:1325,3.15e-17,7;DOID:3904,3.15e-17,7;DOID:0050615,1.06e-16,16;DOID:3910,1.78e-15,2;DOID:3905,1.23e-13,9;DOID:1324,1.42e-08,15;DOID:5409,1.82e-08,4;DOID:3908,5.70e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0003135!1.75e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0001764;1.33e-29;1!UBERON:0001825;1.33e-29;1!UBERON:0004903;1.78e-15;2!UBERON:0002173;1.78e-15;2!UBERON:0002186;1.78e-15;2!UBERON:0004821;8.99e-11;3!UBERON:0007499;8.99e-11;3!UBERON:0003215;8.99e-11;3!UBERON:0010368;8.99e-11;3!UBERON:0009911;8.99e-11;3!UBERON:0002299;8.99e-11;3!UBERON:0006524;8.99e-11;3!UBERON:0008874;8.99e-11;3!UBERON:0002169;8.99e-11;3!UBERON:0004894;8.99e-11;3!UBERON:0001052;1.70e-08;4!UBERON:0001242;1.70e-08;4!UBERON:0001262;1.70e-08;4!UBERON:0004786;1.70e-08;4!UBERON:0004808;1.70e-08;4!UBERON:0001277;1.70e-08;4!UBERON:0009856;2.11e-08;4!UBERON:0004907;4.79e-07;5!UBERON:0004802;5.84e-07;19!UBERON:0000115;5.84e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001764,1.33e-29,1;UBERON:0001825,1.33e-29,1;UBERON:0004903,1.78e-15,2;UBERON:0002173,1.78e-15,2;UBERON:0002186,1.78e-15,2;UBERON:0004821,8.99e-11,3;UBERON:0003215,8.99e-11,3;UBERON:0010368,8.99e-11,3;UBERON:0009911,8.99e-11,3;UBERON:0002299,8.99e-11,3;UBERON:0006524,8.99e-11,3;UBERON:0008874,8.99e-11,3;UBERON:0002169,8.99e-11,3;UBERON:0004894,8.99e-11,3;UBERON:0001052,1.70e-08,4;UBERON:0001242,1.70e-08,4;UBERON:0001262,1.70e-08,4;UBERON:0004786,1.70e-08,4;UBERON:0004808,1.70e-08,4;UBERON:0001277,1.70e-08,4;UBERON:0004907,4.79e-07,5;UBERON:0004802,5.84e-07,19;UBERON:0000115,5.84e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730310090387373,0,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0.0774672005803016,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265059536642971,0.813357600086629,0.207322110030741,0.504641701751257,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.900577248804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,126.370965609381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,4.20619766846903,0,0,0,0,0,0,0,0,4.65983798109815,0.157566364614447,0.0824158583811665,0.404421263125109,0,0,0,0,0.964518890790115,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.2182751650272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0.198916222116275,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785201868921944,0,0,0,0,0,0,0.198950775161368,0,19.5396721927401,0.219881033490858,0.301925687133347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0.407955318967927,0.26721740526556,0.36757959813938,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:119837632..119837659,+ | |||
}} |
Revision as of 20:24, 10 January 2014
Short description: | p@chr1:119837632..119837659, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:119837632..119837659, + |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of large intestine | 1.15e-15 | 2 |
pneumocyte | 8.99e-11 | 3 |
intestinal epithelial cell | 1.70e-08 | 4 |
epithelial cell of lung | 5.84e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
maxillary sinus | 1.33e-29 | 1 |
paranasal sinus | 1.33e-29 | 1 |
bronchoalveolar duct junction | 1.78e-15 | 2 |
alveolar duct | 1.78e-15 | 2 |
bronchiole | 1.78e-15 | 2 |
pulmonary alveolus epithelium | 8.99e-11 | 3 |
alveolus | 8.99e-11 | 3 |
pulmonary lobule | 8.99e-11 | 3 |
lobule | 8.99e-11 | 3 |
alveolus of lung | 8.99e-11 | 3 |
alveolar system | 8.99e-11 | 3 |
pulmonary acinus | 8.99e-11 | 3 |
alveolar sac | 8.99e-11 | 3 |
alveolar wall | 8.99e-11 | 3 |
rectum | 1.70e-08 | 4 |
intestinal mucosa | 1.70e-08 | 4 |
wall of intestine | 1.70e-08 | 4 |
gastrointestinal system mucosa | 1.70e-08 | 4 |
gastrointestinal system epithelium | 1.70e-08 | 4 |
intestinal epithelium | 1.70e-08 | 4 |
lower digestive tract | 4.79e-07 | 5 |
respiratory tract epithelium | 5.84e-07 | 19 |
lung epithelium | 5.84e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 1.33e-29 | 1 |
maxillary sinus cancer | 1.33e-29 | 1 |
bronchus cancer | 3.15e-17 | 7 |
bronchogenic carcinoma | 3.15e-17 | 7 |
respiratory system cancer | 1.06e-16 | 16 |
lung adenocarcinoma | 1.78e-15 | 2 |
lung carcinoma | 1.23e-13 | 9 |
lung cancer | 1.42e-08 | 15 |
lung small cell carcinoma | 1.82e-08 | 4 |
non-small cell lung carcinoma | 5.70e-07 | 5 |