FFCP PHASE1:Hg19::chr19:4279314..4279337,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56961 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30633 | |||
|TSSclassifier=not | |||
|UniProt=Q96IW2 | |||
|association_with_transcript=-321bp_to_AK055673_5end | |||
|coexpression_cluster_id=C1241 | |||
|description=CAGE_peak_5_at_SHD_5end | |||
|id=chr19:4279314..4279337,+ | |||
|ontology_enrichment_celltype=CL:0000188!6.91e-18!9;CL:0000784!3.93e-11!3;CL:0002322!1.47e-10!5;CL:0002575!1.02e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000333;8.68e-25;5!CL:0000784;1.85e-18;3!CL:0000188;5.77e-14;9!CL:0002321;1.14e-08;15!CL:0002575;3.82e-08;2!CL:0000123;6.80e-08;2!CL:0000242;6.80e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,2.12e-18,3;CL:0000188,5.40e-14,9;CL:0002575,3.82e-08,2;CL:0000242,6.58e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;8.91e-21;6!DOID:171;1.00e-12;10!DOID:3095;5.25e-10;22!DOID:2994;5.25e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:169,8.33e-21,6;DOID:171,9.65e-13,10;DOID:3095,5.19e-10,22;DOID:2994,5.19e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0001049!3.99e-10!57;UBERON:0005068!3.99e-10!57;UBERON:0006241!3.99e-10!57;UBERON:0007135!3.99e-10!57;UBERON:0001893!1.34e-08!34;UBERON:0001950!1.96e-08!20;UBERON:0000073!2.59e-08!94;UBERON:0001016!2.59e-08!94;UBERON:0002616!2.70e-08!59;UBERON:0002780!2.86e-08!41;UBERON:0001890!2.86e-08!41;UBERON:0006240!2.86e-08!41;UBERON:0003080!5.08e-08!42;UBERON:0002346!7.43e-08!90;UBERON:0001869!1.23e-07!32;UBERON:0002619!1.37e-07!22;UBERON:0000955!1.54e-07!69;UBERON:0006238!1.54e-07!69;UBERON:0003075!2.01e-07!86;UBERON:0007284!2.01e-07!86;UBERON:0002791!2.76e-07!33;UBERON:0000013!3.96e-07!5;UBERON:0002410!3.96e-07!5;UBERON:0002020!5.07e-07!34;UBERON:0003528!5.07e-07!34;UBERON:0003056!7.86e-07!61;UBERON:0001017!8.17e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;8.68e-25;5!UBERON:0002410;8.68e-25;5!UBERON:0000010;4.53e-14;8!UBERON:0001134;1.54e-13;16!UBERON:0002036;1.54e-13;16!UBERON:0002385;9.14e-07;31!UBERON:0001015;9.14e-07;31!UBERON:0000383;9.14e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,8.01e-25,5;UBERON:0002410,8.01e-25,5;UBERON:0000010,4.33e-14,8 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.33886874027479,1.14398982156026,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487894824518382,0,0.464775771478074,0.10366105501537,0.252320850875628,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34779121492523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,9.60801586670397,0.206768026122887,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.12034033653824,0.154048617114644,0.767518373630648,1.92971201478343,0,0.290033387828457,0.93749290157711,8.1019152438531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0.520874984799877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.253243183823515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201550417460179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242998226632099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0.248385611765534,0,0,0,0,0,2.81000943484129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,6.0004164699473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.49945796605702,12.5076781220151,0,3.60391806033646,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0,0.41023272848151,0,0.276629009856872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337687923091973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203909198930495,0.197318320688547,0,0,0,0,0,0,0,0,0,0.158013611732727,0.813689977576877,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0,0,1.1598144313382,0,0,3.58111395290463,0,0,0,0,0,0,0,0,0,0,0,0.8453114551668,0,0,0,0,0,0,0,0,0,0,0,0.339957450954573,0,0,0,0,0.432626562123789,0,0,2.78736702225161,0.101988829741982,0,0,0,0,0,0.829169439458779,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@SHD | |||
}} |
Revision as of 20:39, 20 January 2014
Short description: | p5@SHD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SHD_5end |
Coexpression cluster: | C1241_neuroblastoma_small_Skeletal_Dendritic_Pericytes_merkel_mesenchymal |
Association with transcript: | -321bp_to_AK055673_5end |
EntrezGene: | SHD |
HGNC: | 30633 |
UniProt: | Q96IW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 2.12e-18 | 3 |
cell of skeletal muscle | 5.40e-14 | 9 |
central nervous system pericyte | 3.82e-08 | 2 |
Merkel cell | 6.58e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 8.01e-25 | 5 |
autonomic nervous system | 8.01e-25 | 5 |
peripheral nervous system | 4.33e-14 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 8.33e-21 | 6 |
neuroectodermal tumor | 9.65e-13 | 10 |
germ cell and embryonal cancer | 5.19e-10 | 22 |
germ cell cancer | 5.19e-10 | 22 |