FFCP PHASE1:Hg19::chr17:48823077..48823131,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=51747 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24309 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=-135bp_to_ENST00000509487_5end | |||
|coexpression_cluster_id=C1228 | |||
|description=CAGE_peak_2_at_LUC7L3_5end | |||
|id=chr17:48823077..48823131,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.06e-23!235;DOID:14566!4.87e-23!239;DOID:0050687!4.12e-12!143;DOID:0050686!2.93e-11!137;DOID:2531!3.66e-09!51;DOID:0060083!3.66e-09!51;DOID:1240!2.20e-07!39;DOID:305!2.49e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,9.89e-23,235;DOID:14566,3.86e-22,239;DOID:0050687,1.76e-11,143;DOID:0050686,3.42e-11,137;DOID:2531,1.05e-09,51;DOID:0060083,1.05e-09,51;DOID:1240,7.85e-08,39;DOID:305,8.77e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0001049!4.09e-16!57;UBERON:0005068!4.09e-16!57;UBERON:0006241!4.09e-16!57;UBERON:0007135!4.09e-16!57;UBERON:0000073!1.12e-15!94;UBERON:0001016!1.12e-15!94;UBERON:0001017!1.22e-15!82;UBERON:0003080!2.94e-14!42;UBERON:0002780!5.30e-14!41;UBERON:0001890!5.30e-14!41;UBERON:0006240!5.30e-14!41;UBERON:0005743!5.48e-14!86;UBERON:0000955!1.06e-13!69;UBERON:0006238!1.06e-13!69;UBERON:0002616!3.65e-12!59;UBERON:0002020!4.52e-12!34;UBERON:0003528!4.52e-12!34;UBERON:0007023!1.49e-11!115;UBERON:0002791!1.04e-10!33;UBERON:0001893!1.15e-10!34;UBERON:0002346!1.66e-10!90;UBERON:0001869!2.60e-10!32;UBERON:0003075!1.40e-09!86;UBERON:0007284!1.40e-09!86;UBERON:0000956!6.74e-08!25;UBERON:0000203!6.74e-08!25;UBERON:0002619!7.02e-08!22;UBERON:0000924!7.03e-08!173;UBERON:0006601!7.03e-08!173;UBERON:0003056!1.02e-07!61;UBERON:0004121!3.54e-07!169;UBERON:0001950!9.65e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.11e-10;41!UBERON:0001890;1.11e-10;41!UBERON:0003528;2.03e-10;34!UBERON:0002020;2.03e-10;34!UBERON:0002791;2.10e-10;32!UBERON:0001869;8.96e-10;32!UBERON:0000073;4.21e-09;53!UBERON:0002616;4.21e-09;53!UBERON:0001893;4.66e-09;34!UBERON:0000956;4.93e-08;25!UBERON:0000203;4.93e-08;25!UBERON:0002619;6.37e-08;22!UBERON:0000955;3.73e-07;68!UBERON:0001016;4.46e-07;83!UBERON:0001017;5.99e-07;75!UBERON:0001950;9.92e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.08e-17,89;UBERON:0001049,1.45e-16,56;UBERON:0005068,1.45e-16,56;UBERON:0006241,1.45e-16,56;UBERON:0007135,1.45e-16,56;UBERON:0001017,3.65e-16,81;UBERON:0000073,6.27e-15,53;UBERON:0002616,6.27e-15,53;UBERON:0002780,3.20e-14,41;UBERON:0001890,3.20e-14,41;UBERON:0003080,3.20e-14,41;UBERON:0006240,3.20e-14,41;UBERON:0000955,5.91e-14,68;UBERON:0006238,5.91e-14,68;UBERON:0003528,3.48e-12,34;UBERON:0002020,3.48e-12,34;UBERON:0002346,4.55e-12,86;UBERON:0003075,4.74e-11,82;UBERON:0007284,4.74e-11,82;UBERON:0002791,5.26e-11,32;UBERON:0001893,9.80e-11,34;UBERON:0007023,1.22e-10,114;UBERON:0001869,2.34e-10,32;UBERON:0011216,2.21e-09,223;UBERON:0010371,1.36e-08,104;UBERON:0004121,2.16e-08,171;UBERON:0000924,2.16e-08,171;UBERON:0006601,2.16e-08,171;UBERON:0003056,2.79e-08,61;UBERON:0000956,7.83e-08,25;UBERON:0000203,7.83e-08,25;UBERON:0002619,8.65e-08,22 | |||
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| |||
|short_description=p2@LUC7L3 | |||
}} |
Revision as of 16:18, 20 January 2014
Short description: | p2@LUC7L3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_2_at_LUC7L3_5end |
Coexpression cluster: | C1228_medulloblastoma_neuroectodermal_small_cerebellum_medial_retinoblastoma_merkel |
Association with transcript: | -135bp_to_ENST00000509487_5end |
EntrezGene: | LUC7L3 |
HGNC: | 24309 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 1.08e-17 | 89 |
neural tube | 1.45e-16 | 56 |
neural rod | 1.45e-16 | 56 |
future spinal cord | 1.45e-16 | 56 |
neural keel | 1.45e-16 | 56 |
central nervous system | 3.65e-16 | 81 |
regional part of nervous system | 6.27e-15 | 53 |
regional part of brain | 6.27e-15 | 53 |
regional part of forebrain | 3.20e-14 | 41 |
forebrain | 3.20e-14 | 41 |
anterior neural tube | 3.20e-14 | 41 |
future forebrain | 3.20e-14 | 41 |
brain | 5.91e-14 | 68 |
future brain | 5.91e-14 | 68 |
brain grey matter | 3.48e-12 | 34 |
gray matter | 3.48e-12 | 34 |
neurectoderm | 4.55e-12 | 86 |
neural plate | 4.74e-11 | 82 |
presumptive neural plate | 4.74e-11 | 82 |
regional part of telencephalon | 5.26e-11 | 32 |
telencephalon | 9.80e-11 | 34 |
adult organism | 1.22e-10 | 114 |
cerebral hemisphere | 2.34e-10 | 32 |
organ system subdivision | 2.21e-09 | 223 |
ecto-epithelium | 1.36e-08 | 104 |
ectoderm-derived structure | 2.16e-08 | 171 |
ectoderm | 2.16e-08 | 171 |
presumptive ectoderm | 2.16e-08 | 171 |
pre-chordal neural plate | 2.79e-08 | 61 |
cerebral cortex | 7.83e-08 | 25 |
pallium | 7.83e-08 | 25 |
regional part of cerebral cortex | 8.65e-08 | 22 |
Ontology term | p-value | n |
---|---|---|
cancer | 9.89e-23 | 235 |
disease of cellular proliferation | 3.86e-22 | 239 |
cell type cancer | 1.76e-11 | 143 |
organ system cancer | 3.42e-11 | 137 |
hematologic cancer | 1.05e-09 | 51 |
immune system cancer | 1.05e-09 | 51 |
leukemia | 7.85e-08 | 39 |
carcinoma | 8.77e-07 | 106 |