FFCP PHASE1:Hg19::chr17:48262709..48262724,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2197 | |||
|TSSclassifier=weak | |||
|UniProt=P02452 | |||
|association_with_transcript=215bp_to_M32798_5end | |||
|coexpression_cluster_id=C1785 | |||
|description=CAGE_peak_27_at_COL1A1_5end | |||
|id=chr17:48262709..48262724,- | |||
|ontology_enrichment_celltype=CL:0000055!2.44e-30!180;CL:0000057!3.28e-19!75;CL:0000183!3.43e-15!59;CL:0000680!8.07e-15!57;CL:0000056!8.07e-15!57;CL:0000355!8.07e-15!57;CL:0000187!2.70e-14!54;CL:0000393!3.93e-11!60;CL:0000211!3.93e-11!60;CL:0000192!1.84e-10!42;CL:0000514!1.84e-10!42;CL:0002620!1.15e-08!23;CL:0002334!5.52e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002334;9.80e-09;12!CL:0000187;6.43e-08;55!CL:0000499;1.05e-07;28!CL:0000057;1.09e-07;73!CL:0000134;1.86e-07;55!CL:0000327;2.39e-07;15!CL:0002320;3.25e-07;188!CL:0000192;4.53e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.07e-19,76;CL:0000680,1.43e-12,58;CL:0000056,1.43e-12,58;CL:0000355,1.43e-12,58;CL:0000187,2.42e-12,55;CL:0000048,3.54e-12,427;CL:0000723,1.91e-11,433;CL:0000034,1.62e-10,441;CL:0000192,3.79e-10,43;CL:0000514,3.79e-10,43;CL:0000393,5.08e-10,61;CL:0000211,5.08e-10,61;CL:0002334,1.06e-08,12;CL:0000499,9.82e-08,28;CL:0000327,1.83e-07,15;CL:0002320,5.95e-07,361 | |||
|ontology_enrichment_development_v019=CL:0000355;2.19e-07;58!CL:0000514;4.53e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.13e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002385!4.80e-15!63;UBERON:0001015!4.80e-15!63;UBERON:0000383!4.80e-15!63;UBERON:0001134!6.84e-15!61;UBERON:0002036!6.84e-15!61;UBERON:0003082!6.84e-15!61;UBERON:0000914!5.05e-14!83;UBERON:0002329!5.05e-14!83;UBERON:0003077!5.05e-14!83;UBERON:0003059!5.05e-14!83;UBERON:0007282!5.05e-14!83;UBERON:0009618!5.05e-14!83;UBERON:0007285!5.05e-14!83;UBERON:0004290!8.21e-14!70;UBERON:0000486!2.04e-10!82;UBERON:0005256!2.41e-10!143;UBERON:0000475!1.08e-09!365;UBERON:0002100!3.76e-09!216;UBERON:0000481!9.90e-08!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;3.63e-07;198!UBERON:0004457;5.87e-07;9!UBERON:0000042;5.87e-07;9!UBERON:0003688;6.18e-07;6!UBERON:0002358;6.18e-07;6!UBERON:0003684;6.18e-07;6!UBERON:0001178;6.18e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,4.09e-13,62;UBERON:0002036,4.09e-13,62;UBERON:0003082,4.09e-13,62;UBERON:0002385,5.59e-13,64;UBERON:0001015,5.59e-13,64;UBERON:0000383,5.59e-13,64;UBERON:0007524,8.47e-11,73;UBERON:0002329,1.47e-10,71;UBERON:0003059,1.47e-10,71;UBERON:0007282,1.47e-10,71;UBERON:0004290,1.47e-10,71;UBERON:0009618,1.47e-10,71;UBERON:0007503,2.41e-10,78;UBERON:0003077,3.05e-10,72;UBERON:0007285,3.05e-10,72;UBERON:0000486,1.31e-08,83;UBERON:0003104,2.17e-08,160;UBERON:0009142,2.17e-08,160;UBERON:0002384,1.92e-07,371;UBERON:0003688,6.16e-07,6;UBERON:0002358,6.16e-07,6;UBERON:0003684,6.16e-07,6;UBERON:0001178,6.16e-07,6 | |||
|phase1_expression=7.08545679155171,6.63711624062048,10.9944435194858,10.007329835313,12.0679495495368,7.85104671690332,5.06599756336621,0,0.261185628199839,0.491467873003018,0.697801167972428,1.09220686065086,4.48403862988371,1.11389717664042,11.5989081504771,1.34465029290355,1.20538905604795,0,1.95173119516203,4.30923703268758,5.30401797235058,2.5076377718247,1.14494394852423,0.136874425072884,0.502170558379211,0,0.0821005894499457,0,0,0,0.464448369948228,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.63239701580021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,394.967123428618,8.04841031644363,2.30152611318355,45.9027723528399,8.02140657017423,4.05570253090306,1.5905718941022,1.45990461090791,0.756278537312543,1.55210578223795,1.66886092816939,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,21.3697939228987,3.16576279161449,1.98613771219828,35.8545775936017,3.54668382198357,2.24271040056923,5.33744978648525,4.19334832309172,0,1.61652806483626,0.653847612453835,11.2004496457249,59.9222961459199,0.234321431833797,0,0.570471821544449,0.149448680551801,0.352303495931295,0.161872944368132,0.140450806702248,0.204154171254893,0.245668634623536,0,10.6920257155385,10.1379441004208,1.82032272387605,11.4978902690598,0,0.250237039743928,0,4.82875382968922,6.12975591598039,2.85452311922534,1.92834711372036,33.7252515095061,13.8812302732069,7.62954844174423,25.8078342632586,3.81294358182224,15.973713482829,8.37525853492154,10.126579934476,5.06672426838233,21.7093045849938,13.4392852017757,2.26304479546337,28.7557769938458,1.71278566986988,1.52604533079439,0,0,0,0,0.132529768321485,0,0.414644220061482,0.252320850875628,0,0,2.57296375277154,0,2.78620756819187,1.44375896333917,0,0,0,0.110293972732394,0,0,0,0,0,0,4.20725321410337,7.4083322039652,26.4615680493976,0,0,0,0,0,3.08822058537346,0.109750285408626,0,0,0,0.325808305310325,2.07986957055916,0,0.115930404975077,14.7934954737135,0.144366447761074,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411309970813294,0,0,1.79409734952577,1.30788020649984,1.83345714552375,9.82465039759111,0,8.45302752556,5.05282421511254,3.12022310734098,1.54324424557285,2.83698264046557,0.532844358032199,13.8688653848403,17.3638913725262,5.76268235746538,3.58309802723109,5.68627117988073,0.791951872933429,0.904318131178758,0.871533458600294,0.399891964728228,0,0,0,8.62649479769697,19.5265290917994,2.85273810081437,2.02693829334611,1.43833425785268,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,2.57652132610194,4.50153468953709,6.78162559249339,64.0550253514886,43.001386300116,32.0135902518887,32.7995961979597,5.41702979509894,0,2.0694614258501,7.97070718242524,2.02806085395873,1.65078867489357,6.46143819627044,9.26487244289311,0,0,0,0,3.32870879020994,0.907170879989041,9.42809669711352,9.51464234385987,16.5589455715513,21.1429596271907,9.72243773226737,18.6590548526585,1.48418066444991,1.23367755042124,2.30830242907065,2.46381468041427,1.55776328755086,2.67283870457906,0,0.200506470303285,0,4.01850568576124,2.1850940160806,1.18011973463482,0,0,0.784349769176855,1.46139224653261,0.105551628892876,0,0,7.55705706357488,0,1.08378575017541,1.50506932156456,0,0,0,0,0,0,0,0.325378394664303,0.309123034943167,3.47963966309705,1.23764249880882,0,0,0,0.48335359146061,0.616194468458578,1.38153307253517,0.827019434907183,2.68550612170684,3.19036726611303,0.681813019328807,8.45804338644005,0,0.192190067365106,0.255225424989168,0,6.507837690162,53.5180989612088,0.6970372701606,4.31247012246524,1.06461206063404,0,1.48259375283136,0.286249773483982,2.97726695487734,1.58189712359363,3.0500831027812,2.303080121802,90.2951264751572,0.95460974377781,2.35484592059769,5.93579110024939,5.4907405947211,2.94531005864216,3.23491970517306,0,2.94880919367287,7.31450608634386,0.243713489631284,0,7.50749512743922,4.52497382251881,2.26016233240486,1.10273068709225,0.66343897524122,0.438450885253763,2.31510213706675,3.27947376023316,2.02910376962704,0.92947049429925,2.53526042279017,2.29458163526482,3.92996164052485,1.07001315444375,1.41904425628239,2.9555068941673,9.54955189583715,1.89736586882858,2.79947776195986,0,0,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568272293612826,0,0,0,0,0,0,0,0,1.19548792950642,0.552567831062295,0,0,0,10.2643063928396,0,0,0,0.986434056369336,0,3.33410970433911,0,0,0,0.260427761085233,0.0874599999961957,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.219385397153973,0.10893846351899,0,8.46452843541768,0.113942055847001,0,0,0,0.31900115973192,0.824378340616761,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,0.176915129006678,164.367108987145,0,0,0,0,28.8927953027564,0,0,0,0,2.36750641709634,18.1486074072996,0.61214552326098,0.568679216656392,0,0,0,0,0,0,0,0.693373365065693,0,0,0,0.873633341210151,0.51595809741485,0.19351266257817,0,0.16423091410641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| |||
|short_description=p27@COL1A1 | |||
}} |
Revision as of 16:11, 20 January 2014
Short description: | p27@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_27_at_COL1A1_5end |
Coexpression cluster: | C1785_Cardiac_umbilical_colon_uterus_throat_trachea_Smooth |
Association with transcript: | 215bp_to_M32798_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | P02452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.07e-19 | 76 |
muscle precursor cell | 1.43e-12 | 58 |
myoblast | 1.43e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.43e-12 | 58 |
muscle cell | 2.42e-12 | 55 |
multi fate stem cell | 3.54e-12 | 427 |
somatic stem cell | 1.91e-11 | 433 |
stem cell | 1.62e-10 | 441 |
smooth muscle cell | 3.79e-10 | 43 |
smooth muscle myoblast | 3.79e-10 | 43 |
electrically responsive cell | 5.08e-10 | 61 |
electrically active cell | 5.08e-10 | 61 |
preadipocyte | 1.06e-08 | 12 |
stromal cell | 9.82e-08 | 28 |
extracellular matrix secreting cell | 1.83e-07 | 15 |
connective tissue cell | 5.95e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 4.09e-13 | 62 |
striated muscle tissue | 4.09e-13 | 62 |
myotome | 4.09e-13 | 62 |
muscle tissue | 5.59e-13 | 64 |
musculature | 5.59e-13 | 64 |
musculature of body | 5.59e-13 | 64 |
dense mesenchyme tissue | 8.47e-11 | 73 |
somite | 1.47e-10 | 71 |
presomitic mesoderm | 1.47e-10 | 71 |
presumptive segmental plate | 1.47e-10 | 71 |
dermomyotome | 1.47e-10 | 71 |
trunk paraxial mesoderm | 1.47e-10 | 71 |
epithelial vesicle | 2.41e-10 | 78 |
paraxial mesoderm | 3.05e-10 | 72 |
presumptive paraxial mesoderm | 3.05e-10 | 72 |
multilaminar epithelium | 1.31e-08 | 83 |
mesenchyme | 2.17e-08 | 160 |
entire embryonic mesenchyme | 2.17e-08 | 160 |
connective tissue | 1.92e-07 | 371 |
omentum | 6.16e-07 | 6 |
peritoneum | 6.16e-07 | 6 |
abdominal cavity | 6.16e-07 | 6 |
visceral peritoneum | 6.16e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.13e-07 | 14 |