FFCP PHASE1:Hg19::chr17:2207011..2207061,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23293 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17809 | |||
|TSSclassifier=strong | |||
|UniProt=Q86US8 | |||
|association_with_transcript=7bp_to_ENST00000263073,NM_017575,uc002fub.1_5end | |||
|coexpression_cluster_id=C3615 | |||
|description=CAGE_peak_3_at_SMG6_5end | |||
|id=chr17:2207011..2207061,- | |||
|ontology_enrichment_celltype=CL:0000988!1.31e-35!182;CL:0000037!2.70e-35!172;CL:0000566!2.70e-35!172;CL:0000738!1.35e-31!140;CL:0002032!1.68e-31!165;CL:0000837!1.68e-31!165;CL:0002031!1.49e-23!124;CL:0002087!5.61e-23!119;CL:0000838!1.69e-17!52;CL:0000542!3.69e-17!53;CL:0000051!3.69e-17!53;CL:0000763!9.15e-15!112;CL:0000049!9.15e-15!112;CL:0000084!1.38e-12!25;CL:0000827!1.38e-12!25;CL:0002057!3.92e-11!42;CL:0000791!4.39e-11!18;CL:0000789!4.39e-11!18;CL:0002420!4.39e-11!18;CL:0002419!4.39e-11!18;CL:0000790!4.39e-11!18;CL:0000860!8.93e-11!45;CL:0000766!2.58e-10!76;CL:0000557!5.73e-09!71;CL:0000839!8.00e-08!70;CL:0000625!5.68e-07!11;CL:0002009!7.61e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0000084;7.99e-13;25!CL:0000791;1.77e-11;18!CL:0000789;1.77e-11;18!CL:0002419;1.77e-11;18!CL:0000542;1.96e-10;53!CL:0000860;1.18e-08;33!CL:0002057;1.18e-08;33!CL:0002087;3.90e-08;104!CL:0000738;1.02e-07;136!CL:0000625;3.31e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.01e-36,177;CL:0000037,1.60e-36,168;CL:0000738,6.83e-33,136;CL:0002032,1.23e-32,161;CL:0000837,1.23e-32,161;CL:0002031,1.76e-24,120;CL:0002087,6.49e-24,115;CL:0000838,1.53e-17,52;CL:0000542,3.36e-17,53;CL:0000051,3.36e-17,53;CL:0000763,1.34e-15,108;CL:0000049,1.34e-15,108;CL:0000084,1.03e-12,25;CL:0000827,1.03e-12,25;CL:0000860,3.04e-11,42;CL:0002057,3.04e-11,42;CL:0000791,3.40e-11,18;CL:0000789,3.40e-11,18;CL:0002420,3.40e-11,18;CL:0002419,3.40e-11,18;CL:0000790,3.40e-11,18;CL:0000766,4.11e-11,72;CL:0000557,1.37e-09,67;CL:0000473,7.11e-09,48;CL:0000234,7.11e-09,48;CL:0000839,2.29e-08,66;CL:0002009,2.41e-07,61;CL:0002194,4.87e-07,59;CL:0000576,4.87e-07,59;CL:0000040,4.87e-07,59;CL:0000559,4.87e-07,59;CL:0000625,4.92e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.77e-11;18!CL:0000051;1.96e-10;53!CL:0002057;2.29e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.67e-15!102;UBERON:0003061!8.67e-15!102;UBERON:0002193!9.94e-14!112;UBERON:0001049!2.87e-08!57;UBERON:0005068!2.87e-08!57;UBERON:0006241!2.87e-08!57;UBERON:0007135!2.87e-08!57;UBERON:0002371!4.24e-08!80;UBERON:0001893!1.04e-07!34;UBERON:0002780!1.11e-07!41;UBERON:0001890!1.11e-07!41;UBERON:0006240!1.11e-07!41;UBERON:0002020!1.28e-07!34;UBERON:0003528!1.28e-07!34;UBERON:0002791!1.46e-07!33;UBERON:0001869!1.60e-07!32;UBERON:0007023!2.23e-07!115;UBERON:0001474!3.89e-07!86;UBERON:0003080!5.86e-07!42;UBERON:0000178!7.22e-07!15;UBERON:0000179!7.22e-07!15;UBERON:0000463!7.22e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;6.94e-07;34!UBERON:0002791;7.15e-07;32!UBERON:0001869;7.16e-07;32!UBERON:0000178;7.30e-07;15!UBERON:0000179;7.30e-07;15!UBERON:0000463;7.30e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.09e-15,98;UBERON:0003061,2.09e-15,98;UBERON:0002193,3.21e-14,108;UBERON:0002405,1.20e-09,93;UBERON:0001049,4.92e-09,56;UBERON:0005068,4.92e-09,56;UBERON:0006241,4.92e-09,56;UBERON:0007135,4.92e-09,56;UBERON:0000073,8.77e-09,53;UBERON:0002616,8.77e-09,53;UBERON:0002371,1.76e-08,76;UBERON:0001893,8.81e-08,34;UBERON:0002780,9.45e-08,41;UBERON:0001890,9.45e-08,41;UBERON:0003080,9.45e-08,41;UBERON:0006240,9.45e-08,41;UBERON:0003528,1.09e-07,34;UBERON:0002020,1.09e-07,34;UBERON:0001869,1.36e-07,32;UBERON:0002791,1.65e-07,32;UBERON:0001474,1.68e-07,82;UBERON:0007023,2.76e-07,114;UBERON:0001016,3.02e-07,89;UBERON:0001017,3.16e-07,81;UBERON:0000178,6.26e-07,15;UBERON:0000179,6.26e-07,15;UBERON:0000463,6.26e-07,15;UBERON:0000955,8.59e-07,68;UBERON:0006238,8.59e-07,68 | |||
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| |||
|short_description=p3@SMG6 | |||
}} |
Revision as of 13:04, 20 January 2014
Short description: | p3@SMG6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SMG6_5end |
Coexpression cluster: | C3615_CD4_CD8_Natural_Mast_CD19_granulocyte_Basophils |
Association with transcript: | 7bp_to_ENST00000263073, NM_017575, uc002fub.1_5end |
EntrezGene: | SMG6 |
HGNC: | 17809 |
UniProt: | Q86US8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.09e-15 | 98 |
blood island | 2.09e-15 | 98 |
hemolymphoid system | 3.21e-14 | 108 |
immune system | 1.20e-09 | 93 |
neural tube | 4.92e-09 | 56 |
neural rod | 4.92e-09 | 56 |
future spinal cord | 4.92e-09 | 56 |
neural keel | 4.92e-09 | 56 |
regional part of nervous system | 8.77e-09 | 53 |
regional part of brain | 8.77e-09 | 53 |
bone marrow | 1.76e-08 | 76 |
telencephalon | 8.81e-08 | 34 |
regional part of forebrain | 9.45e-08 | 41 |
forebrain | 9.45e-08 | 41 |
anterior neural tube | 9.45e-08 | 41 |
future forebrain | 9.45e-08 | 41 |
brain grey matter | 1.09e-07 | 34 |
gray matter | 1.09e-07 | 34 |
cerebral hemisphere | 1.36e-07 | 32 |
regional part of telencephalon | 1.65e-07 | 32 |
bone element | 1.68e-07 | 82 |
adult organism | 2.76e-07 | 114 |
nervous system | 3.02e-07 | 89 |
central nervous system | 3.16e-07 | 81 |
blood | 6.26e-07 | 15 |
haemolymphatic fluid | 6.26e-07 | 15 |
organism substance | 6.26e-07 | 15 |
brain | 8.59e-07 | 68 |
future brain | 8.59e-07 | 68 |