FFCP PHASE1:Hg19::chr16:82660560..82660585,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1012 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1753 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc002fgx.2,uc010chh.2,uc010vns.1,uc010vnt.1,uc010vnu.1_5end | |||
|coexpression_cluster_id=C3592 | |||
|description=CAGE_peak_1_at_CDH13_5end | |||
|id=chr16:82660560..82660585,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.95e-22!180;CL:0000220!6.72e-17!246;CL:0002321!1.25e-16!248;CL:0000222!9.04e-15!119;CL:0000057!4.60e-13!75;CL:0000680!1.33e-10!57;CL:0000056!1.33e-10!57;CL:0000355!1.33e-10!57;CL:0000187!1.34e-09!54;CL:0000183!2.44e-09!59;CL:0000192!2.16e-08!42;CL:0000514!2.16e-08!42;CL:0000393!2.30e-08!60;CL:0000211!2.30e-08!60;CL:0000359!2.40e-08!32 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.09e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.76e-16,250;CL:0000222,5.28e-15,121;CL:0000057,6.09e-14,76;CL:0000680,1.77e-10,58;CL:0000056,1.77e-10,58;CL:0000355,1.77e-10,58;CL:0000187,1.81e-09,55;CL:0000359,1.71e-08,32;CL:0000192,3.25e-08,43;CL:0000514,3.25e-08,43;CL:0000393,4.83e-08,61;CL:0000211,4.83e-08,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!3.63e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.73e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.75e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002049!2.72e-18!79;UBERON:0007798!2.72e-18!79;UBERON:0000483!5.30e-18!309;UBERON:0000119!6.64e-18!312;UBERON:0000475!1.27e-17!365;UBERON:0000477!2.67e-17!286;UBERON:0000055!7.77e-17!69;UBERON:0004111!1.56e-16!241;UBERON:0004872!5.02e-16!84;UBERON:0000468!2.59e-15!659;UBERON:0001009!7.81e-15!113;UBERON:0001981!2.44e-14!60;UBERON:0007500!2.44e-14!60;UBERON:0004537!2.44e-14!60;UBERON:0006965!2.44e-14!60;UBERON:0004535!7.49e-14!110;UBERON:0000467!2.93e-13!625;UBERON:0000914!3.77e-13!83;UBERON:0002329!3.77e-13!83;UBERON:0003077!3.77e-13!83;UBERON:0003059!3.77e-13!83;UBERON:0007282!3.77e-13!83;UBERON:0009618!3.77e-13!83;UBERON:0007285!3.77e-13!83;UBERON:0000486!4.44e-13!82;UBERON:0000480!5.17e-13!626;UBERON:0000481!2.16e-12!347;UBERON:0003914!6.56e-12!118;UBERON:0004290!1.94e-11!70;UBERON:0000025!5.23e-11!194;UBERON:0001134!7.39e-11!61;UBERON:0002036!7.39e-11!61;UBERON:0003082!7.39e-11!61;UBERON:0001637!1.16e-10!42;UBERON:0003509!1.16e-10!42;UBERON:0004572!1.16e-10!42;UBERON:0002385!1.99e-10!63;UBERON:0001015!1.99e-10!63;UBERON:0000383!1.99e-10!63;UBERON:0003102!4.82e-10!95;UBERON:0005256!1.75e-09!143;UBERON:0004573!1.80e-08!33;UBERON:0004571!1.80e-08!33;UBERON:0007100!2.60e-08!27;UBERON:0000033!3.13e-08!123;UBERON:0000490!4.46e-08!138;UBERON:0003103!9.12e-08!69;UBERON:0000153!1.61e-07!129;UBERON:0007811!1.61e-07!129;UBERON:0000948!3.11e-07!24;UBERON:0005498!3.11e-07!24;UBERON:0004140!3.11e-07!24;UBERON:0009881!3.11e-07!24;UBERON:0004141!3.11e-07!24;UBERON:0003084!3.11e-07!24;UBERON:0007005!3.11e-07!24;UBERON:0004139!3.11e-07!24;UBERON:0004291!3.11e-07!24;UBERON:0000064!3.94e-07!219;UBERON:0002050!4.97e-07!605;UBERON:0005423!4.97e-07!605;UBERON:0000922!5.40e-07!612;UBERON:0000923!7.22e-07!604;UBERON:0005291!7.22e-07!604;UBERON:0006598!7.22e-07!604;UBERON:0002532!7.22e-07!604 | |||
|ontology_enrichment_uberon_v019=UBERON:0000055;2.54e-08;65!UBERON:0002049;2.69e-08;75!UBERON:0007798;2.69e-08;75!UBERON:0001637;2.74e-08;42!UBERON:0003509;2.74e-08;42!UBERON:0004572;2.74e-08;42!UBERON:0004573;4.40e-08;33!UBERON:0004571;4.40e-08;33!UBERON:0007100;5.83e-08;25!UBERON:0007500;1.73e-07;56!UBERON:0001981;1.73e-07;56!UBERON:0004537;1.73e-07;56!UBERON:0000948;7.34e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,4.49e-18,78;UBERON:0007798,4.49e-18,78;UBERON:0000483,7.57e-18,306;UBERON:0000119,9.51e-18,309;UBERON:0000055,1.26e-16,68;UBERON:0004111,9.55e-16,240;UBERON:0004872,2.31e-15,83;UBERON:0001009,4.14e-15,112;UBERON:0004535,4.18e-14,109;UBERON:0007500,4.78e-14,59;UBERON:0001981,4.78e-14,59;UBERON:0004537,4.78e-14,59;UBERON:0006965,4.78e-14,59;UBERON:0000486,4.53e-13,83;UBERON:0003914,5.61e-12,117;UBERON:0003077,1.50e-11,72;UBERON:0007285,1.50e-11,72;UBERON:0007503,1.93e-11,78;UBERON:0007524,1.96e-11,73;UBERON:0002329,2.33e-11,71;UBERON:0003059,2.33e-11,71;UBERON:0007282,2.33e-11,71;UBERON:0004290,2.33e-11,71;UBERON:0009618,2.33e-11,71;UBERON:0003102,7.05e-11,99;UBERON:0001637,7.37e-11,42;UBERON:0003509,7.37e-11,42;UBERON:0004572,7.37e-11,42;UBERON:0001134,9.50e-11,62;UBERON:0002036,9.50e-11,62;UBERON:0003082,9.50e-11,62;UBERON:0000025,1.27e-10,192;UBERON:0002385,2.51e-10,64;UBERON:0001015,2.51e-10,64;UBERON:0000383,2.51e-10,64;UBERON:0010314,5.21e-09,132;UBERON:0004573,1.28e-08,33;UBERON:0004571,1.28e-08,33;UBERON:0000490,1.52e-08,148;UBERON:0007100,1.86e-08,27;UBERON:0005423,4.56e-08,581;UBERON:0003103,6.88e-08,68;UBERON:0002050,1.90e-07,564;UBERON:0000948,2.34e-07,24;UBERON:0005498,2.34e-07,24;UBERON:0004140,2.34e-07,24;UBERON:0009881,2.34e-07,24;UBERON:0004141,2.34e-07,24;UBERON:0003084,2.34e-07,24;UBERON:0007005,2.34e-07,24;UBERON:0004139,2.34e-07,24;UBERON:0004291,2.34e-07,24;UBERON:0000922,3.13e-07,592;UBERON:0003104,3.31e-07,160;UBERON:0009142,3.31e-07,160;UBERON:0005256,8.63e-07,122 | |||
|phase1_expression=16.1693757550795,11.1332272423311,28.3318352232902,18.0131937035635,9.38618298297304,46.2339417773195,0,20.2150359496586,2.35067065379855,3.93174298402414,0,0,0.263766978228454,4.57935505952172,2.98257638155124,47.735085398076,42.1886169616784,50.3913962367288,58.0640030560703,15.8826164919056,9.18003110599138,8.77673220138646,6.86966369114536,13.9611913574342,11.9265507615063,0,0,0,0,0,3.56077083626975,16.5495820406207,9.93979531968225,31.0593368540102,0,0,0,1.10799081706375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02699751316684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,4.87613732627923,6.70700859703636,88.8644804812536,50.9629204862238,50.133791063589,25.9275268939874,42.1501551937083,12.1658717575659,29.6839325895173,20.3991045665559,24.2424008513028,11.5916481815476,18.2147644146271,16.6852999252993,0,0,0,0,0,0,5.16782259153433,17.2046919021225,12.4970580578734,6.78369530308812,31.4624577157429,13.2056660131232,14.2116577245031,79.0755283058146,77.9128115283895,84.0148738039322,52.7706405412983,60.0614963517625,52.2292803153083,30.1483725883612,16.2028389576352,27.5936160397806,17.9623498100936,15.9908302286318,4.5994991239765,10.4419222552494,13.923332538711,0,0,24.4212669199819,80.5094561746416,57.2369912723901,38.0014348933938,171.815135828539,37.2401801308275,17.9416832045538,36.2946585480997,93.2403333016865,25.2080938673811,45.3974964874849,24.0288997576784,8.32465852047123,9.21881479167998,7.26396438684769,18.4174445329889,9.12754914471119,16.2899061801463,19.494126774865,8.90301194024723,9.41020404905065,11.432633590274,17.5653073755828,8.78269139994006,16.6320400019487,21.0176889886773,33.675970391707,12.2165084108761,7.74346124188705,5.88057043398232,20.5027445458295,17.5591048352335,24.5190236639216,24.3385655428687,32.101307834286,37.671823494661,57.6604949810132,17.1664839939245,53.716306199108,33.0798618855389,46.8905782883045,54.1600051924926,47.0885966953133,17.7335349393381,11.8643873894734,19.4225286135252,37.0169470115079,31.9508633264953,23.3744867888125,13.90396856946,57.3984733894992,59.1859081682111,52.4852409561877,1.82960559194393,0.795178609928912,1.62671520017326,2.69518743039963,3.28017106138317,1.09493207722749,9.38697193978896,25.7296375277154,8.28809528114883,5.57241513638375,2.16563844500876,3.66751080123516,4.38320194203064,5.06123162755312,3.52940712743661,4.13970943775572,3.08451804844426,4.58426447744559,5.29797955838434,3.46272441251751,14.0249536378683,15.426595118379,11.1124983059478,7.3504355692771,0,0,0.590789906681404,0,1.35287282397425,36.2008079729889,83.6297174813727,23.6043681841001,23.3227215994984,65.0896769464463,4.88712457965487,1.03993478527958,31.7528952455601,28.2870188139187,26.4169562030599,42.1550027462336,38.8907830564353,43.1876925572538,0,0,0,0,0,40.3055486143141,95.7498130733499,67.7684964818607,55.7949596438745,44.4669925926362,24.9198741457387,0,0,0.829312462163088,0.144119953416961,0.25248486685276,0.63497894292169,0,2.34434894420094,13.6857956818164,2.05654985406647,0,1.14330573052231,6.2793407233402,2.1798003441664,5.867062865676,107.424795794713,10.7296933755565,26.204385329236,39.8907174877306,24.9617848587279,3.60090323966999,0,2.1313774321288,65.912855076406,0.542621605391443,4.11620168390384,26.7103671120863,50.110264772699,2.37585561880029,7.53598442648965,13.9445353376047,2.89921674427965,0,0,0,122.208676300707,45.9447743336456,22.8219048065149,26.494979120167,37.3966907041698,47.4511552585723,0,0,0,0,0.254094624222463,0,3.09315525111078,3.35032530668698,3.18969375826582,0,0,0,7.85225547002495,8.00272833695483,1.62759014219841,38.8905511062609,31.2250730395033,46.6799148500447,86.9189299245932,10.8340595901979,2.27407504055985,22.7640756843511,19.2625423575277,16.4088560002116,10.8604518085104,5.67823356641948,3.77457766191941,0,0,0,0,0,0.907170879989041,45.4037288308362,43.7366623870978,29.7499700099058,66.7604967622202,38.3780436800028,53.5643557408213,41.5570586045975,12.9536142794231,20.2420366856965,6.24166385704949,17.6546505922431,8.36714724911707,0.120859449591622,35.890658184288,20.0736555880254,17.222167224691,24.9464900169202,13.3746903258613,9.92639148396306,26.5702913010231,15.6869953835371,21.9208836979891,52.7758144464378,18.1973414513435,13.0972153062917,23.7507507712353,20.0495428497376,10.2959646266664,7.5253466078228,3.82314409567557,2.49322802678617,19.4771036608295,0,0,13.0789563809358,9.18441007959176,22.4511092318369,5.46117361732928,0,0,63.7434747175751,27.3025303335339,112.478750890912,64.4793691008454,10.3212573466812,7.82868741103261,14.1971669659066,11.8162269355101,7.68588477745411,12.1021810930863,29.3805717634233,37.850245617664,23.447188218543,60.1055875849491,16.5898760603102,6.507837690162,61.0735952851442,2.7881490806424,75.7762607233178,24.486077394583,6.08953094452551,56.7092110457995,21.4687330112987,15.2584931437464,24.9939745527793,11.6284418293533,4.86205803491534,6.84702380854273,21.0014143631118,22.7635105657777,11.6917097429155,18.9430550517878,23.4446680667916,24.0597153072246,7.92551605865041,24.4329904618609,0.48763373908959,61.659512876715,28.525539624324,21.9764857366857,11.1710291243433,22.6016233240486,6.61638412255349,15.2590964305481,15.3457809838817,6.94530641120025,3.9353685122798,63.1051272354009,18.2795863878853,20.5637789848536,33.5582564157481,26.0359958684771,55.640684031075,35.8308674711304,49.3991866596534,49.7235288369452,2.65631221636001,1.74967360122491,36.3719586102436,22.119975092681,23.956016669491,6.59006605437454,2.58303223602738,1.68471475667626,4.43430153536676,23.6615102213168,0,0,0,0,0,0,0,0,4.70025912960882,27.9119158026374,12.2520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.771768851558,0,0,0,0.47748896947538,5.04839957415486,0,20.8771006030923,25.7425032031238,113.980113943456,0,0.211125408127993,82.887163112445,1.38141957765574,0,146.244215978081,0,165.784100223743,0,0,0,6.51046477203762,0,20.0046582260346,8.72399471485697,21.4294306753876,13.9729658600836,0,0,6.52499617891314,0,0,0,0,0.583209226766509,1.38899995946634,2.65722415744152,2.65312164975897,0,0.552896299656123,1.77328571372128,14.2600508150082,0,67.6205159751226,45.3237022587365,3.07643550786903,0,0,0,6.06102203490647,15.1136029113073,8.52855641629816,0,0,0,0,0,0,0,0,0,0,1.55488378577335,0,4.97630965539252,3.09601475761687,6.11030144933625,0,0,0,4.1114691118213,13.6438200040794,7.73072670893619,0,0,0,4.73501283419269,4.83962864194656,14.997565319894,4.10712767585172,0,0,0,0,0,0,0,0,0,8.62333097246523,23.5059857767087,7.16379339792324,111.446949041608,0.387025325156341,0.219267951258557,0.0821154570532092,4.07353869251362,0,9.0392296312213,77.8398131993545,9.53830136174351,32.7316815091893,0,12.8254112402454,2.13452994739353,8.99143243119586,0,0,0,0,0,0,37.3736566702439,37.8662303650646,6.83388058163356,0,3.60252173225874,5.06549901900374,0,52.0016184118148,6.30929650270355,36.0274297641208,51.7902558266405,10.0502223440754,27.5557020688608,54.5117081133445,31.467175499304,32.5839841560622,95.1191692551945,0,0,0,0,0.492137407573744,0,7.95229689809303,7.21878052391351,1.12527203925513,2.20063098555574,0.83088067605837,0.2249738915515,0,48.5388957697617,20.7969506311545,3.15222829196793,6.97646022195475,0,154.904261183578,100.563563395389,34.3053756659216,31.1183226071753,0,52.6709613701101,42.3468530688621,80.0139032268052,0,0.082092520749339,1.36310417428337,41.5855375878861,0.58620893471233,0,5.17131825446202,6.34716488364912,0,0,8.75656783055096,11.6331185773753,4.97086866416635,1.9846640872478,0,0,40.2154992395215,3.80812462358632,11.0303553369988,3.67614692116154,3.27872630709804,0,19.4934999592737,19.2801498545102,11.016801902172,2.29363678276028,3.10601344303186,10.0596172765041,0.138348634936231,26.995768119815,0,0,148.687998049244,0,2.46365748638403,8.95528817321244,31.7850101392225,18.8633992910889,46.5931392976719,41.0055679856697,14.2369795455446,69.1097006558709,83.7819317648344,6.06205082272844,22.0304173484555,45.7181721759826,97.1574722273386,28.2578581514792,52.6676883957886,76.8282555072605,68.8703481591489,22.9894141765744,27.4179752761533,63.0649636467226,87.105507758026,31.5787037704916,147.098701881482,61.7048627482855,49.6034428182311,8.92828833475262,7.74523824161614,123.661200264078,0,0.428883182749851,57.1577499403813,0,21.5315901121166,46.9894472652418,91.3353089515586,4.32322026025361,0,73.1493064215948,0,23.6519416914302,0,30.3978700723455,10.331238510031,10.784158019835,0,0,0,0,0.245772908753719,0,1.19992437512958,0,0,16.4579626534382,17.1218533734212,33.1514433295083,75.8934257240227,0,0,0,0.218419276384028,0.848662649770126,0,0.371807292777007,0,66.4629092865645,0,0,4.93746321166957,8.26862788853641,22.6729164590502,9.91876034279095,7.34315751662896,23.3832655234461,15.6284451657465,24.9657681395827,21.1533095777725,0,14.0351237456467,4.9547283806051,13.5737162906042,25.6466978853751,32.036096019242,15.1879183733222,0,3.76051641746286,41.9546542903322,0,0,0,0,33.9038674784341,21.8701867611877,14.8814493480853,29.298104309585,14.2213450344737,0,20.3446583139611,0.527613733078862,0.766574565837572,0.535701835878287,0,0,0,2.83847584520444,0,16.1198728871173,5.16569970623921,36.5696621009441,0,0,3.29670989972159,1.88538707899202,0,13.6973808076424,0.215927591218621,27.7095978974489,1.92986669276972,0,0,2.60787408453869,8.01711364730253,119.770942886235,137.940529491912,51.1532149742428,0.430227358820278,133.241832822617,148.612177899971,2.54032230114557,8.7060610046739,37.2247662797184,18.1552398405712,2.34896406775364,0,0,10.3588613950063,12.4221996296059,18.5570309014112,19.4284397223656,0,0,0.237840181555137,0,0.439762066981716,0.603851374266694,1.15761237161917,10.49085890419,0.470317296361523,3.92237314806249,0,8.83388102017254,5.94092800654172,12.679671827502,51.4879157504085,0.751871343838829,2.2560260790752,0,0,22.93816666152,0,2.92134555298607,0.917458566809082,1.43339583151451,0,30.1202301545752,14.3995727812325,8.46442944824641,17.1117708356706,17.5626738879939,12.9787968637137,3.15416062087697,0,1.39368351112581,16.828156907427,13.8953050738091,50.9097743423041,0.752122617877125,4.84983668596732,0.535928260312357,9.95003327350535,3.72358785102823,11.514635022653,10.7128994158683,0.581300188524055,3.35203457197633,36.7792509264412,1.97306190662311,4.64869534603904,18.5059235712417,23.9563310759697,2.89613827962726,4.80538776130932,11.3104521225645,18.9669615863571,31.6980217256815,0,0,23.4640942403454,44.1291613500148,23.5999783423128,7.32332451604064,6.84330898209489,0 | |||
|short_description=p1@CDH13 | |||
}} |
Revision as of 12:29, 20 January 2014
Short description: | p1@CDH13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDH13_5end |
Coexpression cluster: | C3592_Fibroblast_schwannoma_basal_salivary_mesenchymal_large_Multipotent |
Association with transcript: | 0bp_to_uc002fgx.2, uc010chh.2, uc010vns.1, uc010vnt.1, uc010vnu.1_5end |
EntrezGene: | CDH13 |
HGNC: | 1753 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.76e-16 | 250 |
mesodermal cell | 5.28e-15 | 121 |
fibroblast | 6.09e-14 | 76 |
muscle precursor cell | 1.77e-10 | 58 |
myoblast | 1.77e-10 | 58 |
multi-potent skeletal muscle stem cell | 1.77e-10 | 58 |
muscle cell | 1.81e-09 | 55 |
vascular associated smooth muscle cell | 1.71e-08 | 32 |
smooth muscle cell | 3.25e-08 | 43 |
smooth muscle myoblast | 3.25e-08 | 43 |
electrically responsive cell | 4.83e-08 | 61 |
electrically active cell | 4.83e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.75e-07 | 14 |