FFCP PHASE1:Hg19::chr16:70835034..70835081,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55697 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25507 | |||
|TSSclassifier=strong | |||
|UniProt=Q08AM6,Q9NTB8 | |||
|association_with_transcript=0bp_to_ENST00000261776,NM_018052,uc002ezm.2,uc002ezn.2,uc010cfw.2_5end | |||
|description=CAGE_peak_1_at_VAC14_5end | |||
|id=chr16:70835034..70835081,- | |||
|ontology_enrichment_celltype=CL:0000557!5.13e-16!71;CL:0000839!1.52e-15!70;CL:0002194!7.57e-15!63;CL:0000576!7.57e-15!63;CL:0000040!7.57e-15!63;CL:0000559!7.57e-15!63;CL:0002009!7.49e-14!65;CL:0000766!1.67e-11!76;CL:0002057!2.75e-10!42;CL:0000860!3.95e-10!45;CL:0002031!5.02e-09!124;CL:0002087!1.67e-08!119;CL:0000144!7.70e-08!625;CL:0002371!1.60e-07!591;CL:0000548!3.72e-07!679;CL:0000004!3.72e-07!679;CL:0000255!3.72e-07!679;CL:0000738!4.54e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.58e-11;39!CL:0000234;2.58e-11;39!CL:0000860;4.68e-10;33!CL:0002057;4.68e-10;33!CL:0000576;1.75e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,2.86e-16,67;CL:0000839,8.60e-16,66;CL:0002194,3.93e-15,59;CL:0000576,3.93e-15,59;CL:0000040,3.93e-15,59;CL:0000559,3.93e-15,59;CL:0002009,4.45e-14,61;CL:0000473,1.35e-13,48;CL:0000234,1.35e-13,48;CL:0000766,1.40e-11,72;CL:0000860,2.75e-10,42;CL:0002057,2.75e-10,42;CL:0002031,6.01e-09,120;CL:0002087,1.99e-08,115;CL:0000738,5.74e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;1.12e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!7.98e-16!115;UBERON:0002371!4.97e-15!80;UBERON:0001474!3.05e-13!86;UBERON:0002193!2.50e-11!112;UBERON:0002390!5.18e-10!102;UBERON:0003061!5.18e-10!102;UBERON:0003081!1.50e-09!216;UBERON:0004765!3.70e-08!101;UBERON:0001434!3.70e-08!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,3.37e-16,93;UBERON:0002371,3.47e-15,76;UBERON:0001474,2.56e-13,82;UBERON:0002193,2.71e-11,108;UBERON:0002390,5.61e-10,98;UBERON:0003061,5.61e-10,98;UBERON:0004765,1.82e-09,90;UBERON:0003081,6.86e-08,203;UBERON:0001434,3.29e-07,100 | |||
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| |||
|short_description=p1@VAC14 | |||
}} |
Revision as of 12:09, 20 January 2014
Short description: | p1@VAC14 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VAC14_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000261776, NM_018052, uc002ezm.2, uc002ezn.2, uc010cfw.2_5end |
EntrezGene: | VAC14 |
HGNC: | 25507 |
UniProt: | Q08AM6Q9NTB8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 2.86e-16 | 67 |
myeloid lineage restricted progenitor cell | 8.60e-16 | 66 |
monopoietic cell | 3.93e-15 | 59 |
monocyte | 3.93e-15 | 59 |
monoblast | 3.93e-15 | 59 |
promonocyte | 3.93e-15 | 59 |
macrophage dendritic cell progenitor | 4.45e-14 | 61 |
defensive cell | 1.35e-13 | 48 |
phagocyte | 1.35e-13 | 48 |
myeloid leukocyte | 1.40e-11 | 72 |
classical monocyte | 2.75e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.75e-10 | 42 |
hematopoietic lineage restricted progenitor cell | 6.01e-09 | 120 |
nongranular leukocyte | 1.99e-08 | 115 |
leukocyte | 5.74e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
immune system | 3.37e-16 | 93 |
bone marrow | 3.47e-15 | 76 |
bone element | 2.56e-13 | 82 |
hemolymphoid system | 2.71e-11 | 108 |
hematopoietic system | 5.61e-10 | 98 |
blood island | 5.61e-10 | 98 |
skeletal element | 1.82e-09 | 90 |
lateral plate mesoderm | 6.86e-08 | 203 |
skeletal system | 3.29e-07 | 100 |