FFCP PHASE1:Hg19::chr16:3627377..3627431,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=197358 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29889 | |||
|TSSclassifier=strong | |||
|UniProt=Q7RTR2,B5MDB6,C9JLH9,C3VPR7 | |||
|association_with_transcript=0bp_to_ENST00000301749,ENST00000324659,ENST00000359128,ENST00000419350,ENST00000448023,NM_178844,uc010btn.2_5end | |||
|coexpression_cluster_id=C57 | |||
|description=CAGE_peak_1_at_NLRC3_5end | |||
|id=chr16:3627377..3627431,- | |||
|ontology_enrichment_celltype=CL:0000037!1.20e-49!172;CL:0000566!1.20e-49!172;CL:0000988!2.31e-48!182;CL:0002032!4.41e-46!165;CL:0000837!4.41e-46!165;CL:0000738!7.53e-36!140;CL:0000542!5.53e-34!53;CL:0000051!5.53e-34!53;CL:0000838!2.24e-33!52;CL:0002087!1.33e-29!119;CL:0002031!4.97e-29!124;CL:0000084!7.94e-19!25;CL:0000827!7.94e-19!25;CL:0000791!7.55e-17!18;CL:0000789!7.55e-17!18;CL:0002420!7.55e-17!18;CL:0002419!7.55e-17!18;CL:0000790!7.55e-17!18;CL:0000763!5.41e-16!112;CL:0000049!5.41e-16!112;CL:0000945!3.76e-13!24;CL:0000826!3.76e-13!24;CL:0000625!3.00e-11!11;CL:0000236!9.91e-11!14;CL:0000766!5.34e-07!76 | |||
|ontology_enrichment_celltype_v019=CL:0000084;3.65e-26;25!CL:0000542;2.15e-25;53!CL:0000791;4.97e-23;18!CL:0000789;4.97e-23;18!CL:0002419;4.97e-23;18!CL:0000625;3.67e-15;11!CL:0000945;2.20e-14;24!CL:0000236;9.32e-14;13!CL:0000988;2.34e-09;177!CL:0002087;8.55e-09;104!CL:0000624;1.52e-08;6!CL:0000738;2.55e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.74e-48,168;CL:0000988,8.72e-48,177;CL:0002032,7.56e-44,161;CL:0000837,7.56e-44,161;CL:0000542,2.37e-43,53;CL:0000051,2.37e-43,53;CL:0000838,1.69e-42,52;CL:0000738,3.56e-32,136;CL:0002087,9.26e-27,115;CL:0000084,3.83e-26,25;CL:0000827,3.83e-26,25;CL:0002031,2.84e-24,120;CL:0000791,4.74e-23,18;CL:0000789,4.74e-23,18;CL:0002420,4.74e-23,18;CL:0002419,4.74e-23,18;CL:0000790,4.74e-23,18;CL:0000625,3.59e-15,11;CL:0000236,1.92e-14,14;CL:0000945,2.37e-14,24;CL:0000826,2.37e-14,24;CL:0000763,1.03e-10,108;CL:0000049,1.03e-10,108;CL:0000624,1.45e-08,6;CL:0000134,1.53e-08,354;CL:0002320,6.65e-08,361 | |||
|ontology_enrichment_development_v019=CL:0000051;2.15e-25;53!CL:0000790;4.97e-23;18 | |||
|ontology_enrichment_disease=DOID:2531!4.69e-16!51;DOID:0060083!4.69e-16!51;DOID:1240!5.61e-16!39;DOID:8692!1.20e-11!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;9.99e-16;39!DOID:8692;8.74e-14;31!DOID:2531;2.48e-13;51!DOID:0060083;2.48e-13;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,5.90e-21,51;DOID:0060083,5.90e-21,51;DOID:1240,1.65e-20,39;DOID:8692,1.64e-14,31 | |||
|ontology_enrichment_uberon=UBERON:0007023!6.73e-17!115;UBERON:0000178!6.32e-12!15;UBERON:0000179!6.32e-12!15;UBERON:0000463!6.32e-12!15;UBERON:0002193!1.09e-11!112;UBERON:0002390!2.05e-11!102;UBERON:0003061!2.05e-11!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.43e-16;15!UBERON:0000179;4.43e-16;15!UBERON:0000463;4.43e-16;15!UBERON:0002390;3.96e-11;32!UBERON:0002193;5.54e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.01e-16,15;UBERON:0000179,4.01e-16,15;UBERON:0000463,4.01e-16,15;UBERON:0002193,4.49e-09,108;UBERON:0002390,1.42e-08,98;UBERON:0003061,1.42e-08,98;UBERON:0002384,4.70e-07,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993374274723366,1.23150884174919,1.81034797021462,14.1611139665605,15.3531759238885,6.50227717927519,0,0,0,7.35938405512865,7.10846162437108,9.10161361938026,9.97191735357379,5.81578897663411,7.16135873362311,1.56740831967947,4.85840499028469,2.06060454107349,1.59938062657521,1.88937971844405,1.94067248950253,0.464858073811369,1.23350366406548,0.929119112685311,0.575384784644301,0,0.236482229888585,0.689491361473237,0.645484683583826,0,0.188242339542605,0.272906150057846,0.449446968890169,0.612167784741805,0,0.639337125799041,0.659702600373432,0.598390972864896,1.27867425159808,0.870627715885752,1.70215567407342,0,0.251248665256743,0,0,1.81619850790011,0.368277635987565,0.316462387440884,0.211255286311942,0,0,0.112328631146495,0,0,0,0,0.182664153764634,14.0796995569058,14.7457425040775,15.1216573156804,21.7632413508919,14.0138595462604,15.518315878771,15.2040320740518,15.2648600725658,8.53819453664173,8.22132065119314,14.1441094406335,9.25199300053181,16.2547483264645,5.53106578027662,23.60517241366,29.0827964434382,31.6626308459244,38.954453426028,27.3774703972216,28.406868344084,27.2757419771076,31.4177488416189,27.9875612101095,23.2610589312802,37.1001293358071,40.604948353039,39.0178042679635,36.6696527266198,40.070752578948,40.2826289171723,27.8778738744674,26.7540828089713,25.0885257131944,40.6780540284263,33.3401829433671,36.4245092211588,31.1214221183989,32.1751068467338,40.3671741390979,28.5135613334512,43.5162094134763,36.9881306236269,36.2299107001803,35.7533650586466,35.308503867605,31.652258686283,34.7672254518559,35.337154547403,0,0,0,0,0,0,0,0,0,0.443458794925128,0.263504357079378,1.24430121722827,0,0,0,1.0447784237956,0,1.43094374583205,0,2.22874500797739,0.596287222100115,0,1.38856200643038,0,0,0.825354125820202,1.8809546988313,0,0,0,0.402829317109147,1.52054421143703,0,0,1.62028389576352,0.17859945656816,0.44905874525234,0.675668882899933,7.66583187329416,0,1.46561395144326,3.9534125230819,3.87780264148325,0,0,0,0,0,0.354668382198357,0,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4763109092493,0,0,0,0,0.982827216677626,1.18157981336281,9.27072508770766,0,0,0,0,0,0,0,0,0,0,0,2.16549671641611,0.462985512576611,1.14152491340759,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,12.6789744979045,1.4512968087854,3.45887888200707,2.5248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.1139618472427,38.2239674791739,35.1472947021013,34.1392476504131,0,0,0,0,0,0,2.99161459204025,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.2331536718648,14.6685656556659,20.4916910982613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27466768141793,1.19065593693561,0.431831832204279,0,0,0,0,0,0,0.657779629937804,0.784306353074702,0,0,0,0.9273691048295,0,0,0,0,0,0,0,0,0,0,0,0.340906509664404,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0.753150406214233,0,0,0,0,19.2830091508224,21.4098417999865,19.9376515510957,27.3966541776457,21.3908382004821,22.0480925805524,15.6609116799053,19.0350042310625,0,0,0,6.31730795427444,2.30830740762312,2.48996451719449,6.37705090915289,12.7730797717003,11.6818275780744,32.597731739478,3.24621940274555,13.478264549446,10.72702991456,5.64047624782884,12.5317238545034,9.14175600128658,5.62058262862948,2.82519590067467,13.2012333684001,2.40453741329035,0.614481528616916,0.894704431569664,1.16794399198336,6.64319524366937,0,1.23087398947712,2.70455678475983,10.3252310079324,38.0664913737194,0,0,0,4.56917875537661,0,0,0.593929361665277,0,0,0.140669416410513,0,0,0,1.39473591775749,20.7212936648361,0,0,0.861593638227486,0,0,0,2.55786185113436,1.1837208676432,21.5534783112246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.438770794307945,0,0,0.692552326534174,0,0,0,0,0,0,0,11.241262801531,6.90713128138109,7.31331400360688,0,0,0,0,5.2449071063525,0,0,0,0,2.98578579323551,1.41532103205343,1.83309043480088,1.48260564340311,3.70691816839509,4.59456577824004,0.337005664903385,0,0.234264445725339,6.75082720097964,0,0,0.394584402849391,3.62972148145992,0.30607276163049,1.32691817219825,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,1.26085721434945,0,0.451961481561065,0,0,0.126621591911757,0,0,2.34798294213288,0,0,0,0,0,0,0,0,0,0,0,0,0.410716136675979,16.6070564487064,0,3.15464825135177,0.558564802544508,0.229160424011684,0.717873024576814,0.599037001496973,0.429226048136571,0.89268582976749,0.268733889946905,0,0,0,0,0,0,0.169346664131569,0,0.136203406111576,0.160753148465019,0,0,0,0,0.121499113316049,0,0.709251365692784,0.262272940674991,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0,0,1.72394293573612,0,0,0.293104467356165,0,0.129282956361551,0.26446520348538,0,0,1.9221734262185,1.41483874589699,7.45630299624952,12.9003165671107,0,5.11528913199763,0,0,0.2506898940227,0,0,0,0,0.122026264901963,0.1251909307065,0,0.554645257684261,0.248385611765534,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.779441235357554,0.664324201566815,0.327130788511688,0,0,0,9.19942020932677,6.50819551134259,0,0,0,0,0.622077260032973,0,0,0,0,0.169732529954025,0,0,0,0,3.31219329005264,0,0,0,0.128458450192919,0,0.319267718114302,0.41023272848151,0.504143392443436,0.207471757392654,0,0,0,0,0,0,0,0,0,0.376051641746286,0.20170506870352,0.781514011233092,0,0,0,0.135075169236789,0,0,0.19024743058172,0.546974809018219,1.64477330057155,1.98484471355718,0,0,0,0.672567444437648,0.606965604236632,0.227662191351298,0.709618961301111,3.3417856391176,0,0.339848664884159,0.263091094251396,0,0,1.17739639275771,0.314231179832004,0,0,0,0,1.1436247068265,0,0,0,0,0,0,0,2.15113679410139,0,0,0.423387050190929,0,0,0,0,0,0,0,0.205325613712494,1.1598144313382,0,0,0,0,0,0,0.452888530700021,2.16087642702245,1.5299169235277,0,0.245148321753905,0,0,0.297046400327086,0,0,10.4322148957637,8.70181487643292,0,0,0,0,0.730336388246517,4.58729283404541,0.286679166302903,0,0.0679914901909147,0,3.1741610430924,0,0,0,0.252332849670158,0,0,0,0,0,0,0.151557396436479,0,0,0.103432995861895,1.49263787330687,0.714193294391221,23.4457742704702,23.0297190037633,0,0.25458863311266,1.61693751166575,1.30630048738177,0.684466602170562,18.117702260924,1.36272190246085,0.665320713092027,0,0,0,0,0,1.71138021856013,0.813792356631477,1.33151354837103,11.6738800282795,2.24397944612263 | |||
|short_description=p1@NLRC3 | |||
}} |
Revision as of 02:03, 12 January 2014
Short description: | p1@NLRC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NLRC3_5end |
Coexpression cluster: | C57_Neutrophils_Eosinophils_Whole_CD4_CD8_CD19_Natural |
Association with transcript: | 0bp_to_ENST00000301749, ENST00000324659, ENST00000359128, ENST00000419350, ENST00000448023, NM_178844, uc010btn.2_5end |
EntrezGene: | NLRC3 |
HGNC: | 29889 |
UniProt: | Q7RTR2B5MDB6C9JLH9C3VPR7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.74e-48 | 168 |
hematopoietic cell | 8.72e-48 | 177 |
hematopoietic oligopotent progenitor cell | 7.56e-44 | 161 |
hematopoietic multipotent progenitor cell | 7.56e-44 | 161 |
lymphocyte | 2.37e-43 | 53 |
common lymphoid progenitor | 2.37e-43 | 53 |
lymphoid lineage restricted progenitor cell | 1.69e-42 | 52 |
leukocyte | 3.56e-32 | 136 |
nongranular leukocyte | 9.26e-27 | 115 |
T cell | 3.83e-26 | 25 |
pro-T cell | 3.83e-26 | 25 |
hematopoietic lineage restricted progenitor cell | 2.84e-24 | 120 |
mature alpha-beta T cell | 4.74e-23 | 18 |
alpha-beta T cell | 4.74e-23 | 18 |
immature T cell | 4.74e-23 | 18 |
mature T cell | 4.74e-23 | 18 |
immature alpha-beta T cell | 4.74e-23 | 18 |
CD8-positive, alpha-beta T cell | 3.59e-15 | 11 |
B cell | 1.92e-14 | 14 |
lymphocyte of B lineage | 2.37e-14 | 24 |
pro-B cell | 2.37e-14 | 24 |
myeloid cell | 1.03e-10 | 108 |
common myeloid progenitor | 1.03e-10 | 108 |
CD4-positive, alpha-beta T cell | 1.45e-08 | 6 |
mesenchymal cell | 1.53e-08 | 354 |
connective tissue cell | 6.65e-08 | 361 |
Ontology term | p-value | n |
---|---|---|
blood | 4.01e-16 | 15 |
haemolymphatic fluid | 4.01e-16 | 15 |
organism substance | 4.01e-16 | 15 |
hemolymphoid system | 4.49e-09 | 108 |
hematopoietic system | 1.42e-08 | 98 |
blood island | 1.42e-08 | 98 |
connective tissue | 4.70e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 5.90e-21 | 51 |
immune system cancer | 5.90e-21 | 51 |
leukemia | 1.65e-20 | 39 |
myeloid leukemia | 1.64e-14 | 31 |