FFCP PHASE1:Hg19::chr12:7060414..7060423,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5777 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9658 | |||
|TSSclassifier=strong | |||
|UniProt=F5H0N8 | |||
|association_with_transcript=-1bp_to_ENST00000538715_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_9_at_PTPN6_5end | |||
|id=chr12:7060414..7060423,+ | |||
|ontology_enrichment_celltype=CL:0000037!4.57e-47!172;CL:0000566!4.57e-47!172;CL:0002032!3.76e-44!165;CL:0000837!3.76e-44!165;CL:0000988!5.72e-43!182;CL:0000738!1.06e-42!140;CL:0002031!4.67e-37!124;CL:0002087!3.27e-35!119;CL:0000084!4.69e-29!25;CL:0000827!4.69e-29!25;CL:0000542!6.94e-28!53;CL:0000051!6.94e-28!53;CL:0000838!6.29e-27!52;CL:0000791!7.93e-27!18;CL:0000789!7.93e-27!18;CL:0002420!7.93e-27!18;CL:0002419!7.93e-27!18;CL:0000790!7.93e-27!18;CL:0000763!8.63e-18!112;CL:0000049!8.63e-18!112;CL:0000625!3.58e-17!11;CL:0000766!2.31e-13!76;CL:0000839!5.17e-12!70;CL:0000557!1.01e-11!71;CL:0000624!1.35e-10!6;CL:0000134!1.64e-09!358;CL:0002320!6.49e-09!365;CL:0002009!1.44e-08!65;CL:0002194!2.86e-08!63;CL:0000576!2.86e-08!63;CL:0000040!2.86e-08!63;CL:0000559!2.86e-08!63;CL:0002057!4.57e-08!42;CL:0002274!9.74e-08!5;CL:0000457!9.74e-08!5;CL:0002191!9.74e-08!5;CL:0000097!9.74e-08!5;CL:0000831!9.74e-08!5;CL:0002028!9.74e-08!5;CL:0000860!3.41e-07!45;CL:0000219!7.11e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.17e-50;18!CL:0000789;1.17e-50;18!CL:0002419;1.17e-50;18!CL:0000084;9.95e-45;25!CL:0000625;1.93e-32;11!CL:0000624;3.75e-23;6!CL:0000542;5.02e-13;53!CL:0000898;5.92e-13;3!CL:0000815;3.71e-09;2!CL:0000792;3.71e-09;2!CL:0002677;3.71e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,4.71e-51,18;CL:0000789,4.71e-51,18;CL:0002420,4.71e-51,18;CL:0002419,4.71e-51,18;CL:0000790,4.71e-51,18;CL:0000084,6.84e-45,25;CL:0000827,6.84e-45,25;CL:0000625,7.62e-33,11;CL:0000838,1.68e-26,52;CL:0000542,6.70e-26,53;CL:0000051,6.70e-26,53;CL:0000624,3.80e-23,6;CL:0000738,5.22e-13,136;CL:0000898,6.44e-13,3;CL:0002031,1.20e-11,120;CL:0002087,3.30e-11,115;CL:0000037,2.54e-10,168;CL:0000988,1.79e-09,177;CL:0002032,4.14e-09,161;CL:0000837,4.14e-09,161;CL:0000815,4.19e-09,2;CL:0000792,4.19e-09,2;CL:0002677,4.19e-09,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.17e-50;18!CL:0000051;5.02e-13;53 | |||
|ontology_enrichment_disease=DOID:2531!1.78e-08!51;DOID:0060083!1.78e-08!51;DOID:1240!1.96e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.02e-21!102;UBERON:0003061!1.02e-21!102;UBERON:0002193!1.42e-20!112;UBERON:0000178!5.55e-11!15;UBERON:0000179!5.55e-11!15;UBERON:0000463!5.55e-11!15;UBERON:0002371!1.95e-09!80;UBERON:0002405!2.37e-09!115;UBERON:0004177!2.66e-09!7;UBERON:0002384!1.70e-08!375;UBERON:0001474!3.32e-08!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.42e-14;15!UBERON:0000179;1.42e-14;15!UBERON:0000463;1.42e-14;15!UBERON:0002390;6.59e-09;32!UBERON:0002370;4.86e-08;2!UBERON:0005058;4.86e-08;2!UBERON:0009113;4.86e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.56e-14,15;UBERON:0000179,2.56e-14,15;UBERON:0000463,2.56e-14,15;UBERON:0002370,5.45e-09,4;UBERON:0005058,5.45e-09,4;UBERON:0009113,5.45e-09,4;UBERON:0003295,5.45e-09,4;UBERON:0005562,5.45e-09,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993374274723366,1.23150884174919,0.787107813136792,0.393364276848904,0.383829398097213,0.464448369948228,0,0,0,0,0,0,0,0.601633342410425,0.217010870715852,0,0.647787332037959,0,0,0.377875943688809,0.485168122375632,0,0,0,0.28769239232215,0.256160706529101,1.18241114944293,0.344745680736619,0,0,0.188242339542605,0,0,0,0,0,0.329851300186716,0.199463657621632,0,0,0,0,0.502497330513487,0.521482918420201,0.217188844705117,0,0,0,0.211255286311942,0.212604299965044,0.209658645508376,0.112328631146495,0.600707571366025,0,0.285012743741249,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,1.7703879310245,2.75107533924415,2.05601498999509,0.83593247695339,3.58514493296949,2.8406868344084,3.89653456815823,1.22551502573691,3.24066498222321,1.99380505125259,1.89562704635511,1.28091319725675,1.56071217071854,2.13769275984779,1.93445012450094,2.31842468588042,2.96573126324121,2.94294910898684,2.09071047609954,1.47302145506836,4.59864592322305,3.77990190030893,4.04831507231205,5.73417745783374,1.95325036156926,2.85135613334512,3.76437797694432,1.91979916731628,2.49861453104692,1.65744076430812,4.10563998460523,1.81446068902259,0.534880391567015,1.01377082717959,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0.324547393654683,0.348259474598534,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6487785964879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0.297262324577456,0,0,0,0,0,0,1.47798971368783,0.880484340132261,0.621984346622316,0.720599767084807,1.00993946741104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0.112085143993527,1.18218456121156,0.215627574859517,0.641715181398742,0,0,0,0,0,0,2.99161459204025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.862856803274467,1.17400313583789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,1.01489521846434,2.29391162142713,2.27858874869665,1.90585420366231,0.822724546172388,2.59389324477087,1.08006287447623,2.37937552888281,0,0,0,0.371606350251437,0,1.28055318027145,0.637705090915289,0,0.383010740264733,0,0,0,0.228234679033192,0.313359791546046,0,0.169291777801603,0.1605880751037,0,0.425846237690326,0.343505344755765,0,0,0,0.390776190804081,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,1.65770349318689,0,0,0.738508832766417,0,0,0,2.55786185113436,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,1.02193298195737,0.470940769185074,0.166211681900156,0,0,0,0,0.317873157960757,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508039992394707,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0,0,0,0,0,0,0.828478110694391,0.496166021811951,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0.19998739585493,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0.548257766857182,0,0,0,0,0,0,0,0.0887023701626388,0.230467975111559,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0.218559560503957,0,0,0,0,0,0,0,0.375935671919414,0.386747327841463,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0.23806443146374,1.55013383606415,1.24149428591716,0,0,0,0,0,0.942928742204225,0,0,0,0,0,0,0,0,0,0,0.603821380773079,1.28227396921293 | |||
|short_description=p9@PTPN6 | |||
}} |
Revision as of 11:50, 11 January 2014
Short description: | p9@PTPN6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_PTPN6_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -1bp_to_ENST00000538715_5end |
EntrezGene: | PTPN6 |
HGNC: | 9658 |
UniProt: | F5H0N8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 4.71e-51 | 18 |
alpha-beta T cell | 4.71e-51 | 18 |
immature T cell | 4.71e-51 | 18 |
mature T cell | 4.71e-51 | 18 |
immature alpha-beta T cell | 4.71e-51 | 18 |
T cell | 6.84e-45 | 25 |
pro-T cell | 6.84e-45 | 25 |
CD8-positive, alpha-beta T cell | 7.62e-33 | 11 |
lymphoid lineage restricted progenitor cell | 1.68e-26 | 52 |
lymphocyte | 6.70e-26 | 53 |
common lymphoid progenitor | 6.70e-26 | 53 |
CD4-positive, alpha-beta T cell | 3.80e-23 | 6 |
leukocyte | 5.22e-13 | 136 |
naive T cell | 6.44e-13 | 3 |
hematopoietic lineage restricted progenitor cell | 1.20e-11 | 120 |
nongranular leukocyte | 3.30e-11 | 115 |
hematopoietic stem cell | 2.54e-10 | 168 |
hematopoietic cell | 1.79e-09 | 177 |
hematopoietic oligopotent progenitor cell | 4.14e-09 | 161 |
hematopoietic multipotent progenitor cell | 4.14e-09 | 161 |
regulatory T cell | 4.19e-09 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 4.19e-09 | 2 |
naive regulatory T cell | 4.19e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 2.56e-14 | 15 |
haemolymphatic fluid | 2.56e-14 | 15 |
organism substance | 2.56e-14 | 15 |
thymus | 5.45e-09 | 4 |
hemolymphoid system gland | 5.45e-09 | 4 |
thymic region | 5.45e-09 | 4 |
pharyngeal gland | 5.45e-09 | 4 |
thymus primordium | 5.45e-09 | 4 |