FFCP PHASE1:Hg19::chr12:58282453..58282470,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:58282453..58282470,+ | |||
|id=chr12:58282453..58282470,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002202;1.41e-15;9!CL:0002632;1.41e-15;9!CL:0000322;2.89e-12;3!CL:0000307;2.89e-12;3!CL:0002368;4.15e-11;13!CL:0000082;6.59e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002202,1.52e-15,9;CL:0002632,1.52e-15,9;CL:0000068,2.89e-12,3;CL:0000069,2.89e-12,3;CL:0000307,2.89e-12,3;CL:0000377,2.89e-12,3;CL:0000322,3.24e-12,3;CL:0002368,4.37e-11,13;CL:0000082,6.59e-08,19 | |||
|ontology_enrichment_development_v019=CL:0000377;2.89e-12;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1325;1.04e-19;7!DOID:3904;1.04e-19;7!DOID:3910;1.07e-17;2!DOID:3905;1.41e-15;9!DOID:1324;9.24e-10;15!DOID:5409;1.57e-09;4!DOID:0050615;3.27e-09;16!DOID:3908;7.01e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:1325,1.04e-19,7;DOID:3904,1.04e-19,7;DOID:3910,1.27e-17,2;DOID:3905,1.41e-15,9;DOID:1324,9.25e-10,15;DOID:5409,1.44e-09,4;DOID:0050615,3.27e-09,16;DOID:3908,7.49e-08,5 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;1.07e-17;2!UBERON:0002173;1.07e-17;2!UBERON:0002186;1.07e-17;2!UBERON:0004821;2.89e-12;3!UBERON:0007499;2.89e-12;3!UBERON:0003215;2.89e-12;3!UBERON:0010368;2.89e-12;3!UBERON:0009911;2.89e-12;3!UBERON:0002299;2.89e-12;3!UBERON:0006524;2.89e-12;3!UBERON:0008874;2.89e-12;3!UBERON:0002169;2.89e-12;3!UBERON:0004894;2.89e-12;3!UBERON:0007196;9.24e-10;15!UBERON:0001558;9.24e-10;15!UBERON:0009856;1.57e-09;4!UBERON:0005181;3.54e-08;35!UBERON:0000072;5.75e-08;37!UBERON:0004802;6.59e-08;19!UBERON:0000115;6.59e-08;19!UBERON:0005178;1.93e-07;34!UBERON:0002224;1.93e-07;34!UBERON:0002048;5.91e-07;22!UBERON:0004807;5.91e-07;22!UBERON:0000117;5.91e-07;22!UBERON:0000171;5.91e-07;22!UBERON:0000170;5.91e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,1.27e-17,2;UBERON:0002173,1.27e-17,2;UBERON:0002186,1.27e-17,2;UBERON:0004821,3.24e-12,3;UBERON:0003215,3.24e-12,3;UBERON:0010368,3.24e-12,3;UBERON:0009911,3.24e-12,3;UBERON:0002299,3.24e-12,3;UBERON:0006524,3.24e-12,3;UBERON:0008874,3.24e-12,3;UBERON:0002169,3.24e-12,3;UBERON:0004894,3.24e-12,3;UBERON:0007196,9.66e-10,15;UBERON:0001558,9.66e-10,15;UBERON:0005178,1.93e-09,34;UBERON:0002224,1.93e-09,34;UBERON:0005181,3.43e-09,35;UBERON:0008947,1.60e-08,38;UBERON:0003258,1.60e-08,38;UBERON:0004802,6.59e-08,19;UBERON:0000115,6.59e-08,19;UBERON:0000072,5.10e-07,47;UBERON:0002048,5.91e-07,22;UBERON:0000117,5.91e-07,22;UBERON:0000171,5.91e-07,22;UBERON:0000170,5.91e-07,22;UBERON:0005597,5.91e-07,22;UBERON:0000118,5.91e-07,22 | |||
|phase1_expression=0.181678379270557,0,0.704772020479856,0,0,0.872338524100369,0,0,0,0.245733936501509,0.697801167972428,0,0.263766978228454,0,0,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600182192168805,0.206105058476878,0,0.18611685633159,0,0.0974370051611986,0,0.0920498986422993,0,0.710019185033229,0,0,0,0,0.286804595389004,0.121973706129595,0.132529768321485,0.116193942869518,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,3.57656445851882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0.248107807818777,0.306923946576125,0,0.128139149255701,0,0,0,0,0,0,0,0.232420756919918,0,0,0.552485933615378,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.165018999841176,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0,0.192190067365106,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0.18532421910392,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0.354761064070598,0,0,0.379473173765715,0,0,0,1.08890984861323,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,2.11125408127993,0.19924798825107,0.276283915531148,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,1.01701460117107,0,0,0,0,0,0,0,0,0,0,0,0.41827123283581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0.248505071130865,0.235694034616795,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0.275078873194468,0,0.2249738915515,0.77380195455795,0,0.335434687599266,0,0,0.105600336519406,0,0.383830394638891,0,0,0,0,0,0,0,0,3.23737241392301,0,0,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0.434763085832475,0.149254802886874,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0.155262956876259,0,0.265841714557995,0,0,0.380805212168795,0.406870733204662,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0.127894371303652,0.107824811396682,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.11796972334774,0.183428598521679,0.115525666150338,0,0.690359926060101,0,0.150420656698515,0,0,0,0,0.591424344868181,0,0,0,0.0634158101939068,0,0,0,0.175871244359621,0.127762427639595,0,0,0,0,0,0,0.171488009437418,0,0.131545547125698,0,0,0,0.157115589916002,0,0,0,0,0,0.47404083519818,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0.111855431797792,0.098150233615243,0,0,0,0,0,0.467878926924211,0.795803100645473,0,0,0,1.20770274853339,0,0,0.470317296361523,0,0.942706188406504,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0,0,0,0.250707539292375,0,0,0,0,0,0,0,0.124149428591716,0,0,0,0,0,0.0673520530145875,0.143444410785353,0,0.162806537221949,0,0,0.0898252021065869,0,0,0,0,0,0 | |||
|short_description=p@chr12:58282453..58282470,+ | |||
}} |
Revision as of 14:16, 11 January 2014
Short description: | p@chr12:58282453..58282470, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:58282453..58282470, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 1.52e-15 | 9 |
epithelial cell of lower respiratory tract | 1.52e-15 | 9 |
duct epithelial cell | 2.89e-12 | 3 |
branched duct epithelial cell | 2.89e-12 | 3 |
tracheal epithelial cell | 2.89e-12 | 3 |
tracheoblast | 2.89e-12 | 3 |
pneumocyte | 3.24e-12 | 3 |
respiratory epithelial cell | 4.37e-11 | 13 |
epithelial cell of lung | 6.59e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 1.27e-17 | 2 |
alveolar duct | 1.27e-17 | 2 |
bronchiole | 1.27e-17 | 2 |
pulmonary alveolus epithelium | 3.24e-12 | 3 |
alveolus | 3.24e-12 | 3 |
pulmonary lobule | 3.24e-12 | 3 |
lobule | 3.24e-12 | 3 |
alveolus of lung | 3.24e-12 | 3 |
alveolar system | 3.24e-12 | 3 |
pulmonary acinus | 3.24e-12 | 3 |
alveolar sac | 3.24e-12 | 3 |
alveolar wall | 3.24e-12 | 3 |
tracheobronchial tree | 9.66e-10 | 15 |
lower respiratory tract | 9.66e-10 | 15 |
thoracic cavity element | 1.93e-09 | 34 |
thoracic cavity | 1.93e-09 | 34 |
thoracic segment organ | 3.43e-09 | 35 |
respiratory primordium | 1.60e-08 | 38 |
endoderm of foregut | 1.60e-08 | 38 |
respiratory tract epithelium | 6.59e-08 | 19 |
lung epithelium | 6.59e-08 | 19 |
segment of respiratory tract | 5.10e-07 | 47 |
lung | 5.91e-07 | 22 |
respiratory tube | 5.91e-07 | 22 |
respiration organ | 5.91e-07 | 22 |
pair of lungs | 5.91e-07 | 22 |
lung primordium | 5.91e-07 | 22 |
lung bud | 5.91e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
bronchus cancer | 1.04e-19 | 7 |
bronchogenic carcinoma | 1.04e-19 | 7 |
lung adenocarcinoma | 1.27e-17 | 2 |
lung carcinoma | 1.41e-15 | 9 |
lung cancer | 9.25e-10 | 15 |
lung small cell carcinoma | 1.44e-09 | 4 |
respiratory system cancer | 3.27e-09 | 16 |
non-small cell lung carcinoma | 7.49e-08 | 5 |