FFCP PHASE1:Hg19::chr12:54422245..54422263,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3223 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5128 | |||
|TSSclassifier=strong | |||
|UniProt=P09630 | |||
|association_with_transcript=51bp_to_NM_004503,uc001sev.2_5end | |||
|description=CAGE_peak_7_at_HOXC6_5end | |||
|id=chr12:54422245..54422263,+ | |||
|ontology_enrichment_celltype=CL:0000136!4.23e-15!15;CL:0002334!1.29e-14!12;CL:0000325!5.40e-08!39;CL:0000188!7.37e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000136;7.50e-23;13!CL:0002521;5.69e-16;3!CL:0002580;5.96e-15;3!CL:0002334;1.53e-13;12!CL:0002617;4.71e-11;2!CL:0002564;9.09e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,9.73e-31,15;CL:0002521,4.91e-16,3;CL:0002580,4.70e-15,3;CL:0002334,1.59e-13,12;CL:0002617,4.72e-11,2;CL:0002564,9.41e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001013!1.08e-10!14;UBERON:0002072!3.40e-09!5;UBERON:0005174!2.36e-08!5;UBERON:0001137!2.36e-08!5;UBERON:0001443!2.17e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0001443;6.49e-21;11!UBERON:0000310;5.14e-17;10!UBERON:0001013;1.94e-16;14!UBERON:0002190;5.69e-16;3!UBERON:0004905;3.02e-10;8!UBERON:0000982;3.02e-10;8!UBERON:0004770;3.02e-10;8!UBERON:0002072;9.12e-10;5!UBERON:0011135;9.96e-10;5!UBERON:0002216;9.96e-10;5!UBERON:0011134;9.96e-10;5!UBERON:0002209;9.96e-10;5!UBERON:0002213;9.96e-10;5!UBERON:0007844;9.96e-10;5!UBERON:0011138;9.96e-10;5!UBERON:0001130;9.96e-10;5!UBERON:0001066;9.96e-10;5!UBERON:0001468;9.96e-10;5!UBERON:0002242;9.09e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001443,6.22e-21,11;UBERON:0000310,4.66e-17,10;UBERON:0001013,1.88e-16,14;UBERON:0002190,4.91e-16,3;UBERON:0004905,3.21e-10,8;UBERON:0000982,3.21e-10,8;UBERON:0004770,3.21e-10,8;UBERON:0002072,8.37e-10,5;UBERON:0011135,9.69e-10,5;UBERON:0002216,9.69e-10,5;UBERON:0011134,9.69e-10,5;UBERON:0002209,9.69e-10,5;UBERON:0002213,9.69e-10,5;UBERON:0005856,9.69e-10,5;UBERON:0005866,9.69e-10,5;UBERON:0005863,9.69e-10,5;UBERON:0007844,9.69e-10,5;UBERON:0011138,9.69e-10,5;UBERON:0001130,9.69e-10,5;UBERON:0001066,9.69e-10,5;UBERON:0001468,9.69e-10,5;UBERON:0002242,9.41e-08,3;UBERON:0003068,9.41e-08,3;UBERON:0002328,9.41e-08,3;UBERON:0004880,9.41e-08,3 | |||
|phase1_expression=3.08853244759946,3.8538094300377,1.40954404095971,0,0,0,5.06599756336621,2.52687949370732,8.88031135879451,0,0,0,0.527533956456907,3.83675694176145,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.94283284717341,0.23486899728753,0.161872944368132,0.561803226808994,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0.211931901159562,0,0,0,0,1.35021065793013,0,0,0.460249493211497,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871901815541886,0,0,0,0,0,0.12624243342638,0.063497894292169,0.381988425558278,0,5.13217338068116,0.102827492703324,0,0,0,0,0,1.29271715757778,3.57656445851882,0,0,0,0,0,0.266422179016099,0,0,0,0.65147236858747,0,0,0,0,0.399891964728228,0,0,0,0,0,0,0.723906533337896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.74803204455269,3.50119364741774,0.271265023699736,0,0,0,0,0.902838299183157,0,0,0,0.553107505625109,0,0,0,0,0,0,0.303127571446259,0,0.30239029332968,4.46594054073798,1.99500565274481,1.40330047216537,0.640695746278505,1.02341449813341,0.160853921143607,1.48418066444991,0.771048469013278,0.710246901252508,1.56041596426237,0,0.116210378459959,0.120859449591622,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0.895499018888713,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.290012154876366,0,0.15350367472613,0.137836572484531,1.18162269355101,0.290033387828457,0.681813019328807,0.0890320356467374,0,0,0,0,0,0,0,2.46426864140871,0,0.869932992075073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731140468893853,0,0,0,0,0,0,0,0,0,0,0,0,1.43411352204052,0.196498082026242,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,1.49553699578462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,2.17499872630438,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21031058919516,0,0,0,0,0,0,0,0,0,0.518440956986236,0,0,0.313932918407225,0,0,0,0,0,0,1.92199335066233,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0.343609788497747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.577000469484979,0,0,0,0,0,0,0,0,0,0,0,0.511164065356265,0.113312091520126,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0,1.63205341010842,0.7520696820681,1.83807346058077,0.655745261419609,0,0,0,0,0,0,0,0.138348634936231,0,0.151649117541648,0,0,0,0,0.597019211547496,0,0,0,0,3.55924488638614,0,0,0,0,0.318593534327405,0,0,4.14706207840855,0,0.521745061811734,0,0.380805212168795,0,0,0,0.464033759878494,0.398095888698616,0,2.06037423109676,2.35724642136143,0,0,0.214441591374926,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.06977086483018,0,0,0,0,0,0,0,0,0,0,0,1.98484471355718,0,0,0,0,0,0,0,0,0,0.271878931907327,0,0.118193840883968,0,0,0,0,0,0,0,0,0,1.16241425368125,0,0,0,0,0,0,0.118332000730565,0.0852134047591577,0,0,0,0,0.111855431797792,0,0,0.647428837187895,0.615976841137482,4.6392577253528,0.971421986118279,0.233939463462106,0,0,0,0,0,1.54348316215889,2.40415516554353,0,0,0,0.196308467114945,0.891139200981258,7.1851473689178,0.339854229375634,0,0,0,0.178553938605658,0,0,0,0,0,2.0510303085114,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0.454672189309436,0.535928260312357,0,0,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0.106727345877715,0,0.0898252021065869,2.34640942403454,0,0,0,0,0 | |||
|short_description=p7@HOXC6 | |||
}} |
Revision as of 13:48, 11 January 2014
Short description: | p7@HOXC6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_HOXC6_5end |
Coexpression cluster: | NA |
Association with transcript: | 51bp_to_NM_004503, uc001sev.2_5end |
EntrezGene: | HOXC6 |
HGNC: | 5128 |
UniProt: | P09630 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 9.73e-31 | 15 |
subcutaneous fat cell | 4.91e-16 | 3 |
preadipocyte of the breast | 4.70e-15 | 3 |
preadipocyte | 1.59e-13 | 12 |
adipocyte of breast | 4.72e-11 | 2 |
nucleus pulposus cell of intervertebral disc | 9.41e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
chest | 6.22e-21 | 11 |
breast | 4.66e-17 | 10 |
adipose tissue | 1.88e-16 | 14 |
subcutaneous adipose tissue | 4.91e-16 | 3 |
articulation | 3.21e-10 | 8 |
skeletal joint | 3.21e-10 | 8 |
articular system | 3.21e-10 | 8 |
hypodermis | 8.37e-10 | 5 |
intervertebral cartilage | 9.69e-10 | 5 |
symphysis | 9.69e-10 | 5 |
nonsynovial joint | 9.69e-10 | 5 |
fibrous joint | 9.69e-10 | 5 |
cartilaginous joint | 9.69e-10 | 5 |
developing mesenchymal condensation | 9.69e-10 | 5 |
pre-cartilage condensation | 9.69e-10 | 5 |
cartilaginous condensation | 9.69e-10 | 5 |
cartilage element | 9.69e-10 | 5 |
post-cranial axial skeletal system | 9.69e-10 | 5 |
vertebral column | 9.69e-10 | 5 |
intervertebral disk | 9.69e-10 | 5 |
intervertebral joint | 9.69e-10 | 5 |
nucleus pulposus | 9.41e-08 | 3 |
axial mesoderm | 9.41e-08 | 3 |
notochord | 9.41e-08 | 3 |
chordamesoderm | 9.41e-08 | 3 |