FFCP PHASE1:Hg19::chr12:15374283..15374294,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=85004 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15980 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=9bp_to_uc001rct.2,uc010shu.1_5end | |||
|coexpression_cluster_id=C1664 | |||
|description=CAGE_peak_4_at_RERG_5end | |||
|id=chr12:15374283..15374294,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002615;8.71e-10;3!CL:0000136;8.92e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002615,9.33e-10,3 | |||
|ontology_enrichment_development_v019=UBERON:0005062;1.18e-07;4!UBERON:0007284;1.18e-07;4!UBERON:0006965;2.92e-07;2!UBERON:0004872;3.13e-07;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.09e-54!115;UBERON:0001049!2.00e-23!57;UBERON:0005068!2.00e-23!57;UBERON:0006241!2.00e-23!57;UBERON:0007135!2.00e-23!57;UBERON:0003075!4.83e-21!86;UBERON:0007284!4.83e-21!86;UBERON:0005743!2.13e-20!86;UBERON:0001017!6.28e-20!82;UBERON:0002616!1.93e-19!59;UBERON:0002346!2.11e-19!90;UBERON:0000073!6.21e-19!94;UBERON:0001016!6.21e-19!94;UBERON:0000955!4.07e-18!69;UBERON:0006238!4.07e-18!69;UBERON:0003080!7.40e-18!42;UBERON:0002780!6.19e-17!41;UBERON:0001890!6.19e-17!41;UBERON:0006240!6.19e-17!41;UBERON:0001950!9.50e-15!20;UBERON:0001869!1.63e-14!32;UBERON:0001893!2.12e-14!34;UBERON:0002020!2.26e-14!34;UBERON:0003528!2.26e-14!34;UBERON:0002619!2.27e-14!22;UBERON:0003056!5.80e-14!61;UBERON:0002791!1.59e-13!33;UBERON:0000481!4.62e-12!347;UBERON:0000956!5.01e-12!25;UBERON:0000203!5.01e-12!25;UBERON:0004121!1.58e-11!169;UBERON:0000153!3.19e-11!129;UBERON:0007811!3.19e-11!129;UBERON:0000924!7.23e-11!173;UBERON:0006601!7.23e-11!173;UBERON:0000475!4.10e-10!365;UBERON:0000064!5.46e-10!219;UBERON:0000033!6.88e-10!123;UBERON:0000062!8.19e-10!511;UBERON:0000468!1.33e-08!659;UBERON:0000477!3.14e-08!286;UBERON:0001443!4.93e-08!11;UBERON:0000922!1.37e-07!612;UBERON:0000310!6.23e-07!10;UBERON:0002050!6.91e-07!605;UBERON:0005423!6.91e-07!605;UBERON:0003076!8.68e-07!15;UBERON:0003057!8.68e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000200;7.65e-12;6!UBERON:0003978;4.39e-10;3!UBERON:0000946;4.39e-10;3!UBERON:0001950;8.22e-10;20!UBERON:0002619;8.18e-09;22!UBERON:0007023;6.50e-08;114!UBERON:0000956;1.31e-07;25!UBERON:0000203;1.31e-07;25!UBERON:0002133;1.44e-07;2!UBERON:0002081;4.63e-07;2!UBERON:0001443;8.06e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.22e-26,114;UBERON:0000200,2.60e-11,6;UBERON:0003978,3.86e-10,3;UBERON:0009751,3.86e-10,3;UBERON:0000946,3.86e-10,3;UBERON:0002523,3.86e-10,3;UBERON:0005983,3.86e-10,3;UBERON:0002165,3.86e-10,3;UBERON:0002062,3.86e-10,3;UBERON:0007280,3.86e-10,3;UBERON:0001950,9.47e-10,20;UBERON:0002619,9.28e-09,22;UBERON:0000956,1.46e-07,25;UBERON:0000203,1.46e-07,25;UBERON:0002133,1.70e-07,2;UBERON:0003075,4.15e-07,82;UBERON:0007284,4.15e-07,82;UBERON:0002081,5.34e-07,2;UBERON:0010227,5.34e-07,2;UBERON:0001017,5.88e-07,81;UBERON:0001869,6.34e-07,32;UBERON:0000955,7.84e-07,68;UBERON:0006238,7.84e-07,68;UBERON:0001049,8.16e-07,56;UBERON:0005068,8.16e-07,56;UBERON:0006241,8.16e-07,56;UBERON:0007135,8.16e-07,56;UBERON:0001443,8.31e-07,11 | |||
|phase1_expression=1.45342703416445,0.428201047781966,1.55049844505568,4.00293193412522,1.34088328328186,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0.408001382488506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,1.50401373190767,0.289693037921647,0,0,0.0945348171640679,0,0,1.70272798147026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0.36497735907583,0,0,1.38134921352481,0,0,0.354920400119532,0.337169380156203,0.241011029883482,0.220587945464788,0,0.237270619111097,0.134831308160164,0.196221465125346,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,2.37061319387782,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.640695746278505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0.9273691048295,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677167111206413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0,0,0,0,0,0,0.281338832821026,0.111308705022906,0,0,4.18420775327246,0.276283915531148,0,0,0,0,0,0,0,1.7755813014648,0,0,1.93866549219044,1.39152147242777,0,3.38556089410803,0.437299999980979,1.44999915086959,0,0,0,0,0,0.173624994933292,0,0.60298219312704,0,0.110579259931225,0,1.09692698576986,0,0,4.84786628573922,0.113942055847001,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0.442287822516696,0.611030144933625,0,0,0,0.134802265961354,2.40773294189637,0.702793337176017,0,0,0,2.76209081994573,2.41981432097328,0,0.126373159256976,0.150323419414493,0.103688191397247,0,0,0,0,0.284609546029793,0,0,0,0,8.38688007561745,0,0,0,0,0.678923115418936,0,1.12990370390266,0,0,1.58276989889697,0,0,1.28071796843612,0,0.576361668616424,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,3.0721064139948,1.60412296808179,2.15361907373044,0,0,0.446342914883745,0.53746777989381,0,0,0,0,0,3.05125192695721,0,0,0.136203406111576,0.160753148465019,0,0.415440338029185,0,0,0.668245123238271,0,2.44297692627514,2.7800931711549,0,0,0,1.42939065274673,0,0,0,0,0,0,0,0,0,0,0,1.0342636508924,0.13223260174269,0,0.704815022316672,0.961086713109252,0.943225830597996,2.89967338743037,0.992332043623902,0,0,0,1.63205341010842,0.7520696820681,2.14441903734423,0.983617892129413,0,0,1.46431517882356,1.001527445652,0.573409195690071,0.776503360757966,0.434674820589684,0,0,0,0,0,0.468334905806882,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0.464033759878494,0,0.800055529326307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10606748921385,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383683113910955,0,0,0.655257829152084,0,0,0,0,0,0,0,0,0,0.513833800771676,4.25089728976755,0.159633859057151,1.8460472781668,0.252071696221718,0.622415272177961,0.645902582527404,0,0,0,0,0,0,0,0.198916222116275,3.68530608911361,0,0.781514011233092,0,0,0,1.2156765231311,1.56215619722769,0.413373593002368,0.824405532520789,0.546974809018219,0.548257766857182,2.97726707033577,0,1.53314913167514,0.535701835878287,0,1.21393120847326,0.227662191351298,0.887023701626388,0,0.685952037749674,1.76721305739762,1.18390992413128,0,0,1.25588948560822,0.942693539496011,0,6.39211104356647,0.215927591218621,0,0.78624198594322,1.58013611732727,1.3948971044175,0,0,0,0,0,0,0,0,0.846774100381858,0.4582137370881,0,0,0,0,0,0.647428837187895,0.205325613712494,0,1.94284397223656,0,0,0,0,0.329821550236287,0.150962843566674,0.926089897295336,1.09279780251979,0,1.96118657403124,0,0.196308467114945,0.297046400327086,2.113278637917,0,1.78569444161722,2.8361470708374,0,0,0,0,2.92134555298607,0,0,0,0.475940431336403,0,2.1161073620616,0,0,0,0,0,0.253397002022874,0,0,0,0,2.72803313585662,0.267964130156178,0.829169439458779,0,1.0661699095049,1.66645102024618,0.0645889098360061,0.124149428591716,0,0.381882949668989,0.606351566874658,0.653150243690884,1.02669990325584,0.202056159043763,0.502055437748735,3.32660356546013,0,0.106727345877715,0,0.179650404213174,0,4.64517487894893,6.10344267473608,1.33151354837103,1.40891655513718,0 | |||
|short_description=p4@RERG | |||
}} |
Revision as of 12:27, 11 January 2014
Short description: | p4@RERG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RERG_5end |
Coexpression cluster: | C1664_uterus_epididymis_aorta_cervix_caudate_Adipocyte_ductus |
Association with transcript: | 9bp_to_uc001rct.2, uc010shu.1_5end |
EntrezGene: | RERG |
HGNC: | 15980 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adipocyte of omentum tissue | 9.33e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.22e-26 | 114 |
gyrus | 2.60e-11 | 6 |
valve | 3.86e-10 | 3 |
cardiac mesenchyme | 3.86e-10 | 3 |
cardial valve | 3.86e-10 | 3 |
tunica intima | 3.86e-10 | 3 |
heart layer | 3.86e-10 | 3 |
endocardium | 3.86e-10 | 3 |
endocardial cushion | 3.86e-10 | 3 |
presumptive endocardium | 3.86e-10 | 3 |
neocortex | 9.47e-10 | 20 |
regional part of cerebral cortex | 9.28e-09 | 22 |
cerebral cortex | 1.46e-07 | 25 |
pallium | 1.46e-07 | 25 |
atrioventricular valve | 1.70e-07 | 2 |
neural plate | 4.15e-07 | 82 |
presumptive neural plate | 4.15e-07 | 82 |
cardiac atrium | 5.34e-07 | 2 |
future cardiac atrium | 5.34e-07 | 2 |
central nervous system | 5.88e-07 | 81 |
cerebral hemisphere | 6.34e-07 | 32 |
brain | 7.84e-07 | 68 |
future brain | 7.84e-07 | 68 |
neural tube | 8.16e-07 | 56 |
neural rod | 8.16e-07 | 56 |
future spinal cord | 8.16e-07 | 56 |
neural keel | 8.16e-07 | 56 |
chest | 8.31e-07 | 11 |