FFCP PHASE1:Hg19::chr12:125399403..125399469,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7316 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12468 | |||
|TSSclassifier=strong | |||
|UniProt=F5H041 | |||
|association_with_transcript=8bp_to_ENST00000541046_5end | |||
|description=CAGE_peak_2_at_UBC_5end | |||
|id=chr12:125399403..125399469,- | |||
|ontology_enrichment_celltype=CL:0000548!4.27e-22!679;CL:0000004!4.27e-22!679;CL:0000255!4.27e-22!679;CL:0000144!1.20e-21!625;CL:0000012!2.71e-21!682;CL:0002371!4.35e-18!591;CL:0000003!1.38e-15!722;CL:0002321!2.42e-10!248;CL:0000222!4.07e-10!119;CL:0002057!4.48e-10!42;CL:0000220!6.93e-10!246;CL:0000063!7.38e-10!578;CL:0000055!9.81e-09!180;CL:0000860!4.59e-08!45;CL:0000034!2.16e-07!444;CL:0002139!3.34e-07!24;CL:0000723!6.65e-07!436;CL:0000076!6.67e-07!62;CL:0000048!9.03e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.31e-08;33!CL:0002057;5.31e-08;33!CL:0002139;4.42e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.23e-10,250;CL:0000222,4.19e-10,121;CL:0000860,4.22e-10,42;CL:0002057,4.22e-10,42;CL:0000473,2.69e-09,48;CL:0000234,2.69e-09,48;CL:0000766,3.49e-08,72;CL:0000034,1.05e-07,441;CL:0002009,2.27e-07,61;CL:0000076,2.73e-07,63;CL:0002139,3.21e-07,24;CL:0002194,3.44e-07,59;CL:0000576,3.44e-07,59;CL:0000040,3.44e-07,59;CL:0000559,3.44e-07,59;CL:0000723,3.54e-07,433;CL:0000048,4.84e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;2.48e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!5.90e-09!79;UBERON:0007798!5.90e-09!79;UBERON:0003081!1.68e-08!216;UBERON:0004535!1.82e-08!110;UBERON:0000055!3.35e-08!69;UBERON:0001637!4.57e-08!42;UBERON:0003509!4.57e-08!42;UBERON:0004572!4.57e-08!42;UBERON:0000926!4.78e-08!448;UBERON:0004120!4.78e-08!448;UBERON:0006603!4.78e-08!448;UBERON:0001009!5.57e-08!113;UBERON:0004872!6.40e-08!84;UBERON:0001981!1.05e-07!60;UBERON:0007500!1.05e-07!60;UBERON:0004537!1.05e-07!60;UBERON:0006965!1.05e-07!60;UBERON:0002204!2.16e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;9.90e-07;42!UBERON:0003509;9.90e-07;42!UBERON:0004572;9.90e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.58e-14,315;UBERON:0004120,1.58e-14,315;UBERON:0006603,1.58e-14,315;UBERON:0003081,4.45e-10,203;UBERON:0002049,1.34e-09,78;UBERON:0007798,1.34e-09,78;UBERON:0004535,6.19e-09,109;UBERON:0000055,7.42e-09,68;UBERON:0002204,8.54e-09,167;UBERON:0004872,1.60e-08,83;UBERON:0001009,2.00e-08,112;UBERON:0007500,2.04e-08,59;UBERON:0001981,2.04e-08,59;UBERON:0004537,2.04e-08,59;UBERON:0006965,2.04e-08,59;UBERON:0001637,4.36e-08,42;UBERON:0003509,4.36e-08,42;UBERON:0004572,4.36e-08,42 | |||
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| |||
|short_description=p2@UBC | |||
}} |
Revision as of 16:39, 11 January 2014
Short description: | p2@UBC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_UBC_5end |
Coexpression cluster: | NA |
Association with transcript: | 8bp_to_ENST00000541046_5end |
EntrezGene: | UBC |
HGNC: | 12468 |
UniProt: | F5H041 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.23e-10 | 250 |
mesodermal cell | 4.19e-10 | 121 |
classical monocyte | 4.22e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.22e-10 | 42 |
defensive cell | 2.69e-09 | 48 |
phagocyte | 2.69e-09 | 48 |
myeloid leukocyte | 3.49e-08 | 72 |
stem cell | 1.05e-07 | 441 |
macrophage dendritic cell progenitor | 2.27e-07 | 61 |
squamous epithelial cell | 2.73e-07 | 63 |
endothelial cell of vascular tree | 3.21e-07 | 24 |
monopoietic cell | 3.44e-07 | 59 |
monocyte | 3.44e-07 | 59 |
monoblast | 3.44e-07 | 59 |
promonocyte | 3.44e-07 | 59 |
somatic stem cell | 3.54e-07 | 433 |
multi fate stem cell | 4.84e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 1.58e-14 | 315 |
mesoderm-derived structure | 1.58e-14 | 315 |
presumptive mesoderm | 1.58e-14 | 315 |
lateral plate mesoderm | 4.45e-10 | 203 |
vasculature | 1.34e-09 | 78 |
vascular system | 1.34e-09 | 78 |
cardiovascular system | 6.19e-09 | 109 |
vessel | 7.42e-09 | 68 |
musculoskeletal system | 8.54e-09 | 167 |
splanchnic layer of lateral plate mesoderm | 1.60e-08 | 83 |
circulatory system | 2.00e-08 | 112 |
epithelial tube open at both ends | 2.04e-08 | 59 |
blood vessel | 2.04e-08 | 59 |
blood vasculature | 2.04e-08 | 59 |
vascular cord | 2.04e-08 | 59 |
artery | 4.36e-08 | 42 |
arterial blood vessel | 4.36e-08 | 42 |
arterial system | 4.36e-08 | 42 |