FFCP PHASE1:Hg19::chr11:62414070..62414092,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23193 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4138 | |||
|TSSclassifier=strong | |||
|UniProt=Q14697,E9PRF8,F5H6X6 | |||
|association_with_transcript=0bp_to_ENST00000346178,ENST00000356638,ENST00000526210,ENST00000526392,ENST00000531841,ENST00000532402,ENST00000534419,ENST00000534613,ENST00000540933_5end | |||
|description=CAGE_peak_1_at_GANAB_5end | |||
|id=chr11:62414070..62414092,- | |||
|ontology_enrichment_celltype=CL:0000548!3.91e-31!679;CL:0000004!3.91e-31!679;CL:0000255!3.91e-31!679;CL:0000012!2.91e-30!682;CL:0000055!4.72e-30!180;CL:0000144!3.40e-23!625;CL:0000220!2.02e-21!246;CL:0002321!2.51e-21!248;CL:0002371!7.64e-20!591;CL:0000222!9.83e-19!119;CL:0000003!3.72e-18!722;CL:0000066!2.24e-15!254;CL:0000057!1.22e-14!75;CL:0000183!5.37e-14!59;CL:0000680!3.11e-12!57;CL:0000056!3.11e-12!57;CL:0000355!3.11e-12!57;CL:0000187!7.34e-12!54;CL:0000393!1.69e-10!60;CL:0000211!1.69e-10!60;CL:0000192!8.55e-10!42;CL:0000514!8.55e-10!42;CL:0000063!3.45e-09!578;CL:1000497!2.25e-08!18;CL:0002518!2.25e-08!18;CL:1000449!1.38e-07!16;CL:0000213!2.59e-07!57;CL:0000215!2.59e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:1000497;2.36e-08;17!CL:0002518;2.36e-08;17!CL:1000449;1.46e-07;15!CL:0000134;2.76e-07;55!CL:0000192;4.29e-07;43!CL:0000057;8.81e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.15e-21,250;CL:0000222,4.99e-19,121;CL:0000066,3.12e-15,253;CL:0000057,1.35e-14,76;CL:0000680,2.38e-12,58;CL:0000056,2.38e-12,58;CL:0000355,2.38e-12,58;CL:0000187,5.64e-12,55;CL:0000393,1.28e-10,61;CL:0000211,1.28e-10,61;CL:0000192,6.64e-10,43;CL:0000514,6.64e-10,43;CL:1000497,2.43e-08,17;CL:0002518,2.43e-08,17;CL:1000449,1.49e-07,15;CL:0000213,1.92e-07,58;CL:0000215,1.92e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000355;3.77e-07;58!CL:0000514;4.29e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!9.44e-17!143;UBERON:0003914!6.78e-15!118;UBERON:0000490!3.76e-14!138;UBERON:0002100!4.15e-14!216;UBERON:0002049!4.39e-12!79;UBERON:0007798!4.39e-12!79;UBERON:0003104!4.13e-11!238;UBERON:0009142!4.13e-11!238;UBERON:0000914!3.38e-10!83;UBERON:0002329!3.38e-10!83;UBERON:0003077!3.38e-10!83;UBERON:0003059!3.38e-10!83;UBERON:0007282!3.38e-10!83;UBERON:0009618!3.38e-10!83;UBERON:0007285!3.38e-10!83;UBERON:0000486!3.80e-10!82;UBERON:0004290!6.21e-10!70;UBERON:0001134!1.19e-09!61;UBERON:0002036!1.19e-09!61;UBERON:0003082!1.19e-09!61;UBERON:0000055!2.77e-09!69;UBERON:0004872!3.22e-09!84;UBERON:0002385!6.22e-09!63;UBERON:0001015!6.22e-09!63;UBERON:0000383!6.22e-09!63;UBERON:0009569!1.31e-08!113;UBERON:0004535!7.26e-08!110;UBERON:0001637!8.49e-08!42;UBERON:0003509!8.49e-08!42;UBERON:0004572!8.49e-08!42;UBERON:0000119!1.05e-07!312;UBERON:0000475!1.08e-07!365;UBERON:0004211!1.38e-07!16;UBERON:0001285!1.38e-07!16;UBERON:0007684!1.38e-07!16;UBERON:0003220!1.38e-07!16;UBERON:0004208!1.38e-07!16;UBERON:0001009!1.52e-07!113;UBERON:0002417!1.95e-07!61;UBERON:0000916!1.95e-07!61;UBERON:0001981!2.42e-07!60;UBERON:0007500!2.42e-07!60;UBERON:0004537!2.42e-07!60;UBERON:0006965!2.42e-07!60;UBERON:0006555!3.65e-07!17;UBERON:0005103!3.65e-07!17;UBERON:0000083!3.65e-07!17;UBERON:0009201!3.65e-07!17;UBERON:0004819!3.65e-07!17;UBERON:0006553!3.65e-07!17;UBERON:0003074!3.65e-07!17;UBERON:0003060!3.65e-07!17;UBERON:0000483!3.94e-07!309;UBERON:0000353!5.19e-07!17;UBERON:0006554!6.43e-07!44;UBERON:0000080!8.33e-07!18;UBERON:0002120!8.33e-07!18;UBERON:0004875!8.33e-07!18;UBERON:0005721!8.33e-07!18;UBERON:0005754!8.33e-07!18;UBERON:0007297!8.33e-07!18;UBERON:0000058!9.24e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.46e-07;15!UBERON:0004819;1.46e-07;15!UBERON:0001285;1.46e-07;15!UBERON:0007684;1.46e-07;15!UBERON:0000353;3.76e-07;15!UBERON:0003914;7.66e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,7.89e-17,160;UBERON:0009142,7.89e-17,160;UBERON:0000490,8.42e-15,148;UBERON:0003914,9.31e-15,117;UBERON:0002100,2.30e-14,199;UBERON:0005256,1.92e-13,122;UBERON:0007503,2.47e-12,78;UBERON:0002049,4.18e-12,78;UBERON:0007798,4.18e-12,78;UBERON:0000486,2.84e-10,83;UBERON:0002329,4.65e-10,71;UBERON:0003059,4.65e-10,71;UBERON:0007282,4.65e-10,71;UBERON:0004290,4.65e-10,71;UBERON:0009618,4.65e-10,71;UBERON:0007524,6.53e-10,73;UBERON:0001134,8.94e-10,62;UBERON:0002036,8.94e-10,62;UBERON:0003082,8.94e-10,62;UBERON:0003077,1.63e-09,72;UBERON:0007285,1.63e-09,72;UBERON:0000055,2.69e-09,68;UBERON:0004872,3.23e-09,83;UBERON:0002385,4.68e-09,64;UBERON:0001015,4.68e-09,64;UBERON:0000383,4.68e-09,64;UBERON:0009569,1.59e-08,112;UBERON:0000119,4.22e-08,309;UBERON:0004535,7.55e-08,109;UBERON:0001637,8.49e-08,42;UBERON:0003509,8.49e-08,42;UBERON:0004572,8.49e-08,42;UBERON:0004211,1.49e-07,15;UBERON:0009773,1.49e-07,15;UBERON:0001231,1.49e-07,15;UBERON:0001285,1.49e-07,15;UBERON:0007684,1.49e-07,15;UBERON:0004208,1.49e-07,15;UBERON:0006554,1.53e-07,47;UBERON:0001009,1.59e-07,112;UBERON:0000483,1.65e-07,306;UBERON:0007500,2.38e-07,59;UBERON:0001981,2.38e-07,59;UBERON:0004537,2.38e-07,59;UBERON:0006965,2.38e-07,59;UBERON:0002417,2.57e-07,60;UBERON:0000916,2.57e-07,60;UBERON:0000353,3.84e-07,15;UBERON:0006555,4.14e-07,16;UBERON:0004819,4.14e-07,16;UBERON:0001008,6.09e-07,48 | |||
|phase1_expression=178.771525202228,168.925313349986,211.995423760341,146.10701559557,190.852387320452,184.935767109278,164.644920809402,168.037486331537,192.754993611481,194.867011645697,191.197520024445,293.148321398691,262.975677293768,338.005909933887,247.885237044481,212.454746278761,207.929612168272,211.059616121951,188.342060333136,352.618710331921,332.521126728132,434.44824396863,183.191031763876,201.889776982504,205.764386295882,75.3436180674799,70.4423057480535,73.4371589656627,91.6538765057946,112.078184244386,80.9688324943077,115.847074284345,142.470399582112,185.986267113894,105.587794390951,97.9546011838334,131.239396382677,94.1792194504192,73.8003566690121,67.0563590511982,155.173423648268,124.051274085269,99.9393202420644,60.3402690935194,60.4601509902095,42.4522107078678,65.0801303335917,48.9289786745973,53.5792021648529,65.3061730571281,56.6115161429312,55.5733240238175,66.880662062904,47.7658665852031,55.5248595036801,68.1437269144229,55.9457607618584,49.8886135468088,66.4202046444859,66.1113795776753,58.1796784477128,63.9911522362229,58.4428516831381,51.1469700639233,73.7131466116603,67.5188417382456,49.2029576706504,62.5609176489291,70.4001939867272,60.5956876727275,85.361329871305,70.7093061096124,60.127853613768,64.6441176114542,70.1594189884644,62.0589590704793,73.3505961386613,93.2598504545754,71.6836116668977,42.1818860737048,44.9551690469944,57.7218725896243,59.8387231168497,65.5366333514558,89.840434640219,70.4104867234737,74.0732576016623,75.2925696340373,64.1213526601316,67.7378165720108,72.2900470769,69.8812255351417,56.9587109906591,81.946223718996,67.2610275577843,117.205917724909,70.6188074708661,80.1741956008296,80.8013891068071,93.6244374187797,89.6286233242374,84.2737094207825,77.9306913631645,114.195718307303,52.439851530521,66.68170226967,93.9689407264604,83.7717231005916,93.2525522004327,107.871265420012,107.500156918695,120.847886751517,109.583770176763,104.608463783078,109.762299995226,105.037760680644,77.4105397075881,79.0343124610049,99.6897586556841,85.3755310388579,84.6408490013344,98.8470126226309,73.7818083481087,84.3431767507617,91.1994303832125,107.023317923896,85.3973116797888,89.7150007350059,90.127345979042,75.1638656151727,255.99720962966,373.580378854925,293.572441992746,224.453713630816,300.301408470898,239.14160280432,241.766927903534,325.558728232463,223.57484259302,226.163985411815,244.795547726742,117.488230721448,278.685895543795,209.122425730418,89.2505332550379,82.7116252171519,89.8795813107528,127.830974627663,112.111002512905,87.2925128124478,179.879978666868,192.692549303772,213.49140848867,188.247544660695,239.114678639646,202.48687886789,162.598083965639,178.824397345176,171.123572352308,197.150440918391,229.612710752214,170.300951680947,236.496133764176,152.947841423881,315.145217726004,196.370102496691,116.755273765608,90.7648532695577,168.648301212472,244.910540168577,186.132971833294,40.8519294051796,58.1670396222488,280.844569579792,221.152518504417,257.439830214091,275.808323633935,783.063974644262,181.944880067757,188.387673647815,226.307870946975,264.92094700003,170.232436363672,176.066848395082,151.529184186176,388.685874192184,274.259740052479,416.389184368657,162.011079874936,144.89984267229,175.004404926159,153.134586231469,145.361904042582,139.889003475439,195.579696062188,181.671955304105,166.251181911807,185.328445736,211.660491462445,430.506324196687,492.253427144123,218.668612026332,175.666401900238,123.570595505946,173.835137868812,232.011261419858,157.299247675207,206.560005534398,489.554315794904,334.430870889877,299.88364014078,604.683558610071,228.158299733904,459.373082901357,332.590822264551,552.742488090147,225.17691892753,411.719485792151,250.099574611127,143.380052398286,501.273544633459,192.940268105931,301.987414904978,121.174554933387,130.099899521828,88.9094245705912,130.267918146408,166.85497831675,161.044804817152,146.784053901765,145.841451806113,141.611215321422,306.641083366439,268.231471226433,178.1940485447,162.993142739225,186.244906270753,137.354194846259,148.691696648886,137.858309093352,129.48512398783,144.671950877358,144.023265800436,129.033561909277,150.50186375114,155.053104249395,220.70848093277,336.58025712827,376.1786463569,418.974827448795,247.17231790257,271.260311803025,282.988365300393,122.285278537858,214.860802134819,266.273241583312,166.491182964885,206.81922599402,103.846428501215,175.732868910889,324.179263783773,271.42297895797,242.476654602459,219.45625661782,332.149195993139,230.264484178913,240.289481027261,207.377025935712,173.054763153081,165.68782928431,157.578883895934,105.769927842935,109.83842893137,90.9218189671737,174.869395455013,128.731788296087,170.788102794332,160.429934059707,202.042671920066,54.6856194064497,120.538306164106,93.2976519933474,88.0572915377634,95.1867948034905,169.031394605754,213.149541461519,278.977524359912,193.311864005657,130.590915733221,169.093141566126,120.904581002735,281.33689062251,238.470157651804,247.956744360632,238.377043857342,371.9627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| |||
|short_description=p1@GANAB | |||
}} |
Revision as of 08:10, 11 January 2014
Short description: | p1@GANAB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GANAB_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000346178, ENST00000356638, ENST00000526210, ENST00000526392, ENST00000531841, ENST00000532402, ENST00000534419, ENST00000534613, ENST00000540933_5end |
EntrezGene: | GANAB |
HGNC: | 4138 |
UniProt: | Q14697E9PRF8F5H6X6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.15e-21 | 250 |
mesodermal cell | 4.99e-19 | 121 |
epithelial cell | 3.12e-15 | 253 |
fibroblast | 1.35e-14 | 76 |
muscle precursor cell | 2.38e-12 | 58 |
myoblast | 2.38e-12 | 58 |
multi-potent skeletal muscle stem cell | 2.38e-12 | 58 |
muscle cell | 5.64e-12 | 55 |
electrically responsive cell | 1.28e-10 | 61 |
electrically active cell | 1.28e-10 | 61 |
smooth muscle cell | 6.64e-10 | 43 |
smooth muscle myoblast | 6.64e-10 | 43 |
kidney cell | 2.43e-08 | 17 |
kidney epithelial cell | 2.43e-08 | 17 |
epithelial cell of nephron | 1.49e-07 | 15 |
lining cell | 1.92e-07 | 58 |
barrier cell | 1.92e-07 | 58 |