FFCP PHASE1:Hg19::chr11:27721743..27721753,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=627 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1033 | |||
|TSSclassifier=strong | |||
|UniProt=P23560 | |||
|association_with_transcript=281bp_to_ENST00000356660,ENST00000418212,ENST00000533246,NM_001143813,NM_001143814,NM_001709,uc001mru.2,uc009yjd.2,uc010rdw.1_5end | |||
|description=CAGE_peak_26_at_BDNF_5end | |||
|id=chr11:27721743..27721753,- | |||
|ontology_enrichment_celltype=CL:0002622!2.02e-17!3;CL:0000511!2.09e-07!1;CL:0002625!2.09e-07!1;CL:0000216!2.09e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0000511;5.42e-195;1!CL:0002625;5.42e-195;1!CL:0000216;5.42e-195;1!CL:0000154;4.27e-34;6!CL:0000077;6.95e-12;19!CL:0000151;4.53e-08;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000511,5.42e-195,1;CL:0002625,5.42e-195,1;CL:0000216,5.42e-195,1;CL:0000154,4.27e-34,6;CL:0000077,6.95e-12,19;CL:0000151,5.81e-07,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004122!4.87e-13!15;UBERON:0002367!1.67e-12!11;UBERON:0010147!1.67e-12!11;UBERON:0009846!1.67e-12!11;UBERON:0003353!1.67e-12!11;UBERON:0004902!1.67e-12!11;UBERON:0003820!1.67e-12!11;UBERON:0009847!1.67e-12!11;UBERON:0003937!1.92e-11!12;UBERON:0005399!1.92e-11!12;UBERON:0000162!8.91e-10!14;UBERON:0001353!8.91e-10!14;UBERON:0000163!8.91e-10!14;UBERON:0006866!8.91e-10!14;UBERON:0000164!8.91e-10!14;UBERON:0000931!8.91e-10!14;UBERON:0003101!1.04e-08!22;UBERON:0000079!1.04e-08!22;UBERON:0001136!2.09e-07!1;UBERON:0001343!2.09e-07!1;UBERON:0004910!2.09e-07!1;UBERON:0005154!2.09e-07!1;UBERON:0005295!2.09e-07!1;UBERON:0004813!2.09e-07!1;UBERON:0005297!2.09e-07!1;UBERON:0005294!2.09e-07!1;UBERON:0010141!2.09e-07!1;UBERON:0005891!2.09e-07!1;UBERON:0001046!3.88e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0001136;5.42e-195;1!UBERON:0001343;5.42e-195;1!UBERON:0004910;5.42e-195;1!UBERON:0004813;5.42e-195;1!UBERON:0004909;1.55e-98;2!UBERON:0005904;3.10e-50;4!UBERON:0000473;5.22e-26;8!UBERON:0000058;3.81e-21;10!UBERON:0003135;2.25e-19;11!UBERON:0000991;6.74e-11;21!UBERON:0000487;1.80e-10;22!UBERON:0003101;1.80e-10;22!UBERON:0000079;1.80e-10;22!UBERON:0006914;2.15e-09;25!UBERON:0000490;4.53e-08;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001136,5.42e-195,1;UBERON:0001343,5.42e-195,1;UBERON:0004910,5.42e-195,1;UBERON:0005154,5.42e-195,1;UBERON:0005295,5.42e-195,1;UBERON:0004813,5.42e-195,1;UBERON:0005297,5.42e-195,1;UBERON:0005294,5.42e-195,1;UBERON:0010141,5.42e-195,1;UBERON:0005891,5.42e-195,1;UBERON:0004909,1.55e-98,2;UBERON:0005904,3.10e-50,4;UBERON:0000473,5.22e-26,8;UBERON:0004871,5.22e-26,8;UBERON:0003135,2.25e-19,11;UBERON:0004876,2.25e-19,11;UBERON:0004122,1.22e-14,15;UBERON:0000058,6.95e-12,19;UBERON:0000991,6.74e-11,21;UBERON:0009196,6.74e-11,21;UBERON:0009117,6.74e-11,21;UBERON:0005564,6.74e-11,21;UBERON:0000487,1.80e-10,22;UBERON:0004176,1.80e-10,22;UBERON:0003101,1.80e-10,22;UBERON:0000079,1.80e-10,22;UBERON:0006914,2.15e-09,25;UBERON:0003064,1.52e-08,28 | |||
|phase1_expression=0.54503513781167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323292113637624,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0.114814448164607,0.182091168006717,0.524497659837696,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0.286249773483982,0,0,0.762520775695299,0,0,0,0,0,0,0.117812402345686,0,0,0.421258456238981,0,0,0,0,0.141405431953713,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0.464033759878494,0.398095888698616,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p26@BDNF | |||
}} |
Revision as of 07:01, 11 January 2014
Short description: | p26@BDNF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_26_at_BDNF_5end |
Coexpression cluster: | NA |
Association with transcript: | 281bp_to_ENST00000356660, ENST00000418212, ENST00000533246, NM_001143813, NM_001143814, NM_001709, uc001mru.2, uc009yjd.2, uc010rdw.1_5end |
EntrezGene: | BDNF |
HGNC: | 1033 |
UniProt: | P23560 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
androgen binding protein secreting cell | 5.42e-195 | 1 |
seminiferous tubule epithelial cell | 5.42e-195 | 1 |
Sertoli cell | 5.42e-195 | 1 |
protein secreting cell | 4.27e-34 | 6 |
mesothelial cell | 6.95e-12 | 19 |
secretory cell | 5.81e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
mesothelium | 5.42e-195 | 1 |
seminiferous tubule of testis | 5.42e-195 | 1 |
epithelium of male gonad | 5.42e-195 | 1 |
epithelial cord | 5.42e-195 | 1 |
sex cord | 5.42e-195 | 1 |
seminiferous tubule epithelium | 5.42e-195 | 1 |
testis sex cord | 5.42e-195 | 1 |
genital ridge | 5.42e-195 | 1 |
primitive sex cord of indifferent gonad | 5.42e-195 | 1 |
coelomic epithelium | 5.42e-195 | 1 |
epithelium of gonad | 1.55e-98 | 2 |
duct of male reproductive system | 3.10e-50 | 4 |
testis | 5.22e-26 | 8 |
somatic layer of lateral plate mesoderm | 5.22e-26 | 8 |
male reproductive organ | 2.25e-19 | 11 |
urogenital ridge | 2.25e-19 | 11 |
genitourinary system | 1.22e-14 | 15 |
duct | 6.95e-12 | 19 |
gonad | 6.74e-11 | 21 |
indifferent external genitalia | 6.74e-11 | 21 |
indifferent gonad | 6.74e-11 | 21 |
gonad primordium | 6.74e-11 | 21 |
simple squamous epithelium | 1.80e-10 | 22 |
external genitalia | 1.80e-10 | 22 |
male organism | 1.80e-10 | 22 |
male reproductive system | 1.80e-10 | 22 |
squamous epithelium | 2.15e-09 | 25 |
intermediate mesoderm | 1.52e-08 | 28 |