FFCP PHASE1:Hg19::chr11:111741994..111742058,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79796 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15672 | |||
|TSSclassifier=strong | |||
|UniProt=Q9H6U8 | |||
|association_with_transcript=0bp_to_ENST00000398006,ENST00000530723,NM_001077691,NM_001077692,uc001ply.2,uc001plz.2_5end | |||
|description=CAGE_peak_4_at_ALG9_5end | |||
|id=chr11:111741994..111742058,- | |||
|ontology_enrichment_celltype=CL:0000838!5.55e-15!52;CL:0000542!1.34e-14!53;CL:0000051!1.34e-14!53;CL:0000945!2.30e-08!24;CL:0000826!2.30e-08!24;CL:0000084!7.84e-07!25;CL:0000827!7.84e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.20e-08;53!CL:0000945;4.11e-08;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.81e-15,52;CL:0000542,4.51e-15,53;CL:0000051,4.51e-15,53;CL:0000945,1.03e-08,24;CL:0000826,1.03e-08,24;CL:0000084,5.97e-07,25;CL:0000827,5.97e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000051;1.20e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001893!8.24e-10!34;UBERON:0002780!8.49e-10!41;UBERON:0001890!8.49e-10!41;UBERON:0006240!8.49e-10!41;UBERON:0000924!2.09e-09!173;UBERON:0006601!2.09e-09!173;UBERON:0001869!2.26e-09!32;UBERON:0002791!2.41e-09!33;UBERON:0001049!2.59e-09!57;UBERON:0005068!2.59e-09!57;UBERON:0006241!2.59e-09!57;UBERON:0007135!2.59e-09!57;UBERON:0003080!3.62e-09!42;UBERON:0004121!3.86e-09!169;UBERON:0002616!9.11e-09!59;UBERON:0002020!1.98e-08!34;UBERON:0003528!1.98e-08!34;UBERON:0001950!2.64e-08!20;UBERON:0002619!1.08e-07!22;UBERON:0000956!1.87e-07!25;UBERON:0000203!1.87e-07!25;UBERON:0000955!2.92e-07!69;UBERON:0006238!2.92e-07!69;UBERON:0007023!4.44e-07!115;UBERON:0000073!4.77e-07!94;UBERON:0001016!4.77e-07!94;UBERON:0001017!5.59e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;2.90e-08;34!UBERON:0001869;5.94e-08;32!UBERON:0001950;7.31e-08;20!UBERON:0002791;8.60e-08;32!UBERON:0002780;2.72e-07;41!UBERON:0001890;2.72e-07;41!UBERON:0003528;3.57e-07;34!UBERON:0002020;3.57e-07;34!UBERON:0002619;3.64e-07;22!UBERON:0000956;7.37e-07;25!UBERON:0000203;7.37e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,4.93e-10,56;UBERON:0005068,4.93e-10,56;UBERON:0006241,4.93e-10,56;UBERON:0007135,4.93e-10,56;UBERON:0002780,7.87e-10,41;UBERON:0001890,7.87e-10,41;UBERON:0003080,7.87e-10,41;UBERON:0006240,7.87e-10,41;UBERON:0000073,9.05e-10,53;UBERON:0002616,9.05e-10,53;UBERON:0001893,1.18e-09,34;UBERON:0004121,2.75e-09,171;UBERON:0000924,2.75e-09,171;UBERON:0006601,2.75e-09,171;UBERON:0001869,3.31e-09,32;UBERON:0002791,5.01e-09,32;UBERON:0001016,2.18e-08,89;UBERON:0003528,2.84e-08,34;UBERON:0002020,2.84e-08,34;UBERON:0001950,3.42e-08,20;UBERON:0000955,7.62e-08,68;UBERON:0006238,7.62e-08,68;UBERON:0001017,1.16e-07,81;UBERON:0002619,1.80e-07,22;UBERON:0007023,2.85e-07,114;UBERON:0000956,2.97e-07,25;UBERON:0000203,2.97e-07,25;UBERON:0010371,4.86e-07,104 | |||
|phase1_expression=0.908391896352783,0.856402095563933,0.986680828671798,0,0.446961094427288,0.872338524100369,0,0.631719873426831,1.82829939739887,2.21160542851358,1.39560233594486,2.40285509343189,3.16520373874144,1.48519623552056,1.98838425436749,1.34465029290355,2.41077811209591,0.730310090387373,0.975865597581014,1.72369481307503,1.63200552995402,1.25381888591235,2.0036519099174,1.50561867580173,1.88313959392204,5.34893840235659,4.35133124084712,4.171671409625,1.57345710739562,1.15148819429164,1.08371286321253,2.75826367343678,2.71085326900425,1.10926203050036,1.93668001450754,2.55904618477359,3.52320527201817,1.10799081706375,1.40381113229099,1.73608696572681,2.01523926815932,1.6194683300949,3.60605794687861,0.436194716338694,0,0.970336244751265,0.697287110717054,0.411167888021826,0.619412741790207,0,0,0,0.689491361473237,0,0,0.376484679085209,0.272906150057846,0,0,0,0.639337125799041,0.989553900560148,0.199463657621632,0.426224750532694,0,0,0,0.75374599577023,0,1.08594422352558,0.605399502633369,0.368277635987565,0,0.422510572623884,0.212604299965044,0.838634582033504,0.561643155732475,0.300353785683013,0.48217676009124,0,0.19891667719909,0.182664153764634,0,3.27683166757279,4.44754626931777,2.98711155796555,2.00197993518006,5.74752439954483,7.27149360063348,1.90810750907073,3.41527781465669,5.28513470433845,6.11637165000366,0,2.80254281490768,2.10707267820062,3.73748563216283,3.14408610199332,3.08402248499264,0.668745981562712,1.62961133316795,2.36723902867367,5.84480185223734,1.55974639639243,1.76763544484902,1.99380505125259,1.62482318259009,1.92136979588513,1.69077151827842,1.80881695064044,1.38175008892924,1.44901542867526,1.03800594213442,1.87278579662799,1.04535523804977,1.47302145506836,2.29932296161153,1.37450978193052,1.26509846009751,3.82278497188916,1.95325036156926,1.90090408889675,1.95747654801105,2.17577238962511,1.24930726552346,1.4206635122641,2.46338399076314,4.03213486449465,2.67440195783507,3.33096128930438,0,1.34140171940727,2.04580098949649,1.80719576192283,1.00267582127178,2.31754430337318,1.5905718941022,3.40644409211845,1.41802225746102,0.886917589850256,1.58102614247627,1.96468613246569,1.82147644146271,1.48313777113772,0.97364218096405,0.348259474598534,0.930705723632056,5.48528435902286,2.85997455390064,2.97166001063652,1.78886166630035,1.72046919021225,1.04142150482278,0.56530794192401,0.419499436209906,1.6507082516404,2.50793959844173,1.03366703667732,1.77883131343355,1.33888245105868,1.20848795132744,0,2.19655851793353,0.367663080345869,1.62028389576352,1.60739510911344,0.898117490504679,1.57656072676651,3.06633274931766,0.949265659568129,2.01521918323448,0,0,0.436094052142534,3.97577561356255,1.51956613997496,2.25095607382472,4.30254931123221,1.77334191099179,3.36406560085384,0,0.98667019366864,2.8008993185979,1.0776853765575,2.28846664358842,2.72443369760877,1.72852777344,3.51482147750695,1.87296046098192,1.1409436430889,0.896692083310806,2.46612447151906,2.75184005425824,3.08991774744947,1.63323337003915,1.71968044236475,2.27316718586684,2.37600571456411,1.23633464639278,1.82032272387605,0.718618141816238,1.0100166837244,1.7516592782075,3.04770527032601,0.438977620880838,0.612975591598039,2.55404700141215,0.794025282120147,2.15267562826634,1.2813443329114,1.90738711043606,2.70081986475962,1.95799805553034,2.83404594050192,0.744467425326359,2.53164498361899,1.65642908774038,2.52433774244115,2.48534726334208,1.77810662500693,2.13005755509969,1.41052937518696,0.508681776931463,0.773043412653187,1.36373060295417,2.86804595389004,0.243947412259191,0.662648841607426,1.04574548582567,0.725627385107593,0.756962552626885,0.36497735907583,6.25798129319264,0.643240938192885,2.76269842704961,1.39310378409594,1.44375896333917,0.709840800239063,0.674338760312407,0.482022059766964,0.772057809126758,1.08939722046203,0.949082476444386,0.404493924480493,0.784885860501384,1.15424147083917,1.4763109092493,4.20725321410337,3.2925920906512,2.94017422771084,1.26755034821831,1.96565443335525,4.13552934676983,2.20731549707325,1.35287282397425,1.20097467208968,0.98775256867763,2.24803506515239,2.01057944823262,2.31471112896324,0.651616610620649,0,1.44331342025273,2.20267769452646,1.17408694235822,1.29929802984966,0.462985512576611,1.14152491340759,0.790204397959275,1.71697232418975,3.20082107913617,3.04205544681009,1.78357394746474,0,0.839910640994298,0.708875486211932,1.79117045405697,2.90633938513962,3.83382679165211,0.985326475791887,2.64145302039678,3.10992173311158,4.03535869567492,2.5248486685276,2.41291998310242,1.52795370223311,7.03304683260282,1.71072446022705,1.02827492703324,0.600686115687835,2.5724378936752,1.56983518083505,1.74384027533312,1.1734125731352,1.68053230485111,3.57656445851882,0,1.32969058292435,3.12022310734098,1.02882949704857,0,1.3321108950805,2.7165818795048,1.08524321078289,0.823240336780769,0.325736184293735,1.77695974371273,1.58390374586686,0.904318131178758,0.871533458600294,0.899756920638513,1.2162378064119,3.51579964002488,0,0.958499421966331,1.14861935834114,1.42636905040718,1.01346914667305,1.43833425785268,1.96967059563885,5.71634234366989,3.54655368363469,3.01878604803324,3.08023287071396,1.27047312111232,6.50699269288109,3.09315525111078,1.50764638800914,2.55175500661265,0,0,0,1.47229790062968,1.00034104211935,1.89885516589815,2.28767947683888,1.24900292158013,0.946214490203608,1.63997980989798,2.70851489754947,0,1.03473071292505,1.32845119707087,1.65932251687533,2.5196248195744,2.34961388955289,3.77457766191941,1.24060815673732,1.94142780736755,2.45473382947922,1.81876542867756,0,1.81434175997808,0.496215615637554,1.99500565274481,1.68396056659844,1.15325234330131,2.04682899626681,0.482561763430822,1.48418066444991,0.771048469013278,1.77561725313127,1.72467027628999,1.55776328755086,1.16210378459959,1.0877350463246,1.20303882181971,0.460404944679482,0.803701137152247,0.910455840033585,1.57349297951309,1.35359883872224,1.5403067420883,0.784349769176855,2.92278449306521,0.844413031143006,2.27466768141793,2.04112446331819,0.647747748306418,0,0.541892875087706,0.501689773854853,1.01950509218015,0,0.223874754722178,0.219259876645935,1.3071772551245,0.256450125116389,1.31205858279882,0.325378394664303,1.54561517471583,0.54941678891006,1.48517099857058,2.87132768998086,0,3.21367859688319,2.61010939388729,1.07834031980251,2.30255512089194,1.92971201478343,1.07420244868274,2.46528379654188,1.44885266607372,1.06838442776085,0.826424576804891,1.34533047155574,1.40373983744043,2.32662895967765,4.18360994367557,3.1481234683064,0.6970372701606,1.84820148105653,0.532306030317022,2.60979897622522,2.22389062924704,2.14687330112987,1.116475108079,1.58189712359363,1.5250415513906,0.255897791311334,0.42793898803392,2.86382923133343,2.35484592059769,0.899362287916574,1.37268514868027,1.29593642580255,1.2130948894399,1.58510321173008,2.10629228119491,0.975267478179181,1.21856744815642,1.05650146756755,2.72999822815972,1.1312434556297,4.52032466480971,1.10273068709225,1.32687795048244,3.06915619677634,1.15755106853338,0,1.82619339266434,0.6196469961995,1.12678241012897,2.15117028306077,1.47373561519682,1.07001315444375,1.77380532035299,2.11107635297664,2.63435914367922,2.65631221636001,1.39973888097993,1.44333169088268,2.01090682660736,5.44454924306613,1.7887322147588,1.72202149068492,0,1.7737206141467,1.60806380144872,2.53723804616085,0,0.569647187174163,1.19115887728894,1.23408681925858,2.59389324477087,0.540031437238115,0.79312517629427,0.854592569019785,0.962479855263359,0.735120647943095,1.30062222588003,4.47234560226979,3.20138295067864,2.55082036366116,0.798317485731266,0.766021480529467,2.11673582723883,1.62310970137278,1.12318871245384,0.912938716132769,1.25343916618419,0,1.52362600021443,1.76646882614069,0.605399121573143,3.40676990152261,1.03051603426729,1.53620382154229,0.894704431569664,0.500547425135725,1.17232857241224,1.11362469558097,0,1.35227839237992,3.3307196799782,1.4098700508785,0.935702702041099,1.31857361344705,2.6699314784893,2.67464122265948,2.27308917445131,1.90995587790152,2.07875276582847,2.15012491469462,0.994147647766298,2.95405774462077,2.00355669041231,2.96646973608167,4.64475897881586,3.78571177677032,1.38141957765574,1.51159648712566,1.73856760253663,3.93871377475422,2.17727711363265,1.3480252672099,0.716084698702437,1.53471711068062,1.479651084554,0,6.66821940867821,1.93866549219044,2.96857914117924,0,0.260427761085233,1.74919999992391,0.724999575434793,1.137934482855,1.01701460117107,1.41832609060762,2.75794698593172,0.874813840149763,4.86149985813218,4.42870692906919,3.73848959738765,0,4.20201187738654,3.54657142744257,1.53569778007781,0.653630781113941,1.25481369850743,2.00070672109872,1.70913083770502,0.922255617552241,1.25660702173681,2.17294743844016,2.87101043758728,1.64875668123352,1.5991043280559,3.06579894587209,1.09886179476517,1.49590513710141,2.03036094555463,1.37243774022418,1.51039428278258,0.75901493089674,1.11255605286265,2.74297483886435,1.79556088975062,1.41353071433941,1.94749775767882,0,1.94606641907346,0.611030144933625,1.18608451472249,2.71840665682306,0.939797545549098,2.29163852134302,0.802577647298789,3.98249557733077,2.18945747058799,1.56531695145672,1.21390189767046,1.57833761139756,4.83962864194656,3.0607276163049,2.59064976476801,1.9542044523884,1.65901106235595,2.65861549082874,2.31694369112849,1.56966459203613,2.38944859545918,1.42304773014896,2.21879476821022,0,0.489961987071888,0.870592065804026,2.09672001890436,3.43972064943233,1.16107597546902,0.950161122120412,0.985385484638511,1.35784623083787,2.82419605412801,1.12990370390266,1.37041924646751,1.78843150532691,2.78567502205866,1.17330829640882,0.561111741760736,1.70762395791482,0.999048047910651,1.29681375438695,1.83258553865465,1.20116498503375,0.288109595976299,1.86378803348149,1.41416420770077,1.49494626680975,1.255234155748,2.54995544090804,1.73370353940911,1.20084057741958,1.9166753044879,3.83239764200917,3.0083580899397,3.41753560563109,2.23425921017803,2.06244381610515,0.717873024576814,2.59582700648688,1.28767814440971,1.33902874465124,1.47803639470798,2.52209918479682,0,1.41809728153003,0.659326867049332,0.741438982396034,1.08270229666224,1.52411997718412,0.795229689809303,2.45166131000836,0.643012593860077,0.137539436597234,0,1.799791132412,4.6428117273477,3.76647251279753,1.67717343799633,0.709251365692784,2.93745693555989,1.26720403823288,1.25501137532991,1.53532157855556,1.42939065274673,1.98627591109629,0.76280561296425,1.08599920350743,0,1.63293680054705,0,0.410462603746695,1.87426823963964,2.03961764736226,1.90517903781507,5.30027555648885,1.29282956361551,1.19009341568421,1.53978154095896,1.40963004463334,2.13574825135389,2.82967749179399,2.48543433208317,6.45015828355536,6.91640711642805,4.87170393523584,1.27668251554036,0.544017803369474,1.5041393641362,0.919036730290385,0.655745261419609,0.942324577501406,1.77213635993397,3.17268288745104,2.50381861413,2.29363678276028,2.3295100822739,2.85643453530364,0.830091809617385,0.499921631848426,3.33628058591625,1.7127920012698,2.35265819698172,2.34167452903441,0.724605143054126,2.08956724041624,2.57084640831947,1.66441758450784,1.89403005275089,0.754703705257725,0.889811221596536,1.14420034198462,2.26846385644859,0.777186002913902,1.03498604992744,0.955780602982214,0.899606224327209,1.08684069813382,2.07353103920428,0.265841714557995,1.04349012362347,1.95334891696384,1.14241563650639,1.22061219961398,1.63663793282303,1.28892668450986,2.32016879939247,3.58286299828754,1.60011105865261,0.686791410365586,0.673498977531838,1.26184898228651,1.54095864325843,2.78774068787403,1.04397716786085,0.680117776536817,1.389134845943,0.244736704506468,0.895444205407437,0.926404341482917,0,0.883445729729405,0.578742114812744,2.19625172848994,1.53744911152768,1.38172136692479,0.303859956177382,3.17994403148981,0.779441235357554,1.0629187225069,1.4720885483026,2.29326894192489,0.245772908753719,1.90180911022764,3.39978572953381,0.853533837553127,2.41100971525142,0,2.20927140302209,2.65771064666944,1.86623178009892,1.91841556955478,1.29389773676018,4.08891448825331,2.18419276384028,1.86705782949428,1.91317428091515,2.10690799240304,1.67593475391973,0.636008701306837,3.94308725006267,0.80057074828547,1.05802783107205,0.6124909547064,4.49604575675217,5.6678630530234,2.39450788585727,2.66651273512982,2.52071696221718,3.66533438060355,2.26065903884592,4.28308260777463,3.04257927353179,2.24142474360707,0.733714394086716,1.38630799380406,1.52552838186867,1.3807198521202,1.98916222116275,3.00841313397029,2.0170506870352,4.68908406739856,2.09525355585138,1.80149109261106,1.47856086217045,3.7821047386301,3.90539049306924,3.51367554052013,4.24885928299176,3.82882366312754,5.48257766857182,2.48105589194647,1.75871244359621,1.40538670403555,1.07140367175657,3.02655349996942,2.42786241694653,3.18727067891817,1.33053555243958,1.95897778844825,2.7438081509987,2.31097092121228,3.3544114517053,1.30013224972365,2.00216523405724,2.27629969266491,3.29942738823604,0.560544326627578,1.82631744101899,2.80705868584208,10.0327854456281,3.50235066465616,1.10609528212909,1.27865567904938,1.56472445072321,3.20684545892101,2.69381013411948,2.21934020222135,2.76503864725637,5.59295566466361,2.95830001826413,2.13033511897894,2.54032230114557,1.3746412112643,0.93061915699296,0,0.447421727191169,1.76670420507437,0.121917924982269,0,0.718639647993729,1.1598144313382,4.37139893753226,2.80727356154527,4.57586782871147,1.78380136166353,1.01651473835064,0.989464650708862,4.52888530700021,1.46630900405095,2.62271472604749,0.940634592723046,3.67722482630858,0.942706188406504,1.37415926980462,3.26751040359795,2.113278637917,1.52934403219035,2.6315497034359,2.57831551894309,2.69841120997308,1.07132363163395,1.41157948686277,0.641930933513346,0.730336388246517,6.88093925106811,2.72345207987757,1.10440093535229,3.39957450954573,3.49080552272302,1.0580536810308,0.743990036333503,1.84870251452567,0.432626562123789,1.13549782351571,1.09265571963696,1.26698501011437,0.305966489225945,0.534434810531121,0.18378979906969,0.250707539292375,0.682008283964155,1.33982065078089,0,1.86179392551411,4.26467963801962,3.80903090341985,2.64814530327625,3.16581042908875,2.91542842709595,1.2729431655633,0.606351566874658,0.870866991587845,1.71116650542641,3.70436291580231,0.78894425931944,1.99596213927608,0.814032686109745,2.13454691755431,0,3.50318288215689,7.03922827210363,3.30051899293739,5.2896503181046,0,2.21401172950129,3.8468219076388 | |||
|short_description=p4@ALG9 | |||
}} |
Revision as of 10:17, 11 January 2014
Short description: | p4@ALG9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ALG9_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000398006, ENST00000530723, NM_001077691, NM_001077692, uc001ply.2, uc001plz.2_5end |
EntrezGene: | ALG9 |
HGNC: | 15672 |
UniProt: | Q9H6U8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.81e-15 | 52 |
lymphocyte | 4.51e-15 | 53 |
common lymphoid progenitor | 4.51e-15 | 53 |
lymphocyte of B lineage | 1.03e-08 | 24 |
pro-B cell | 1.03e-08 | 24 |
T cell | 5.97e-07 | 25 |
pro-T cell | 5.97e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
neural tube | 4.93e-10 | 56 |
neural rod | 4.93e-10 | 56 |
future spinal cord | 4.93e-10 | 56 |
neural keel | 4.93e-10 | 56 |
regional part of forebrain | 7.87e-10 | 41 |
forebrain | 7.87e-10 | 41 |
anterior neural tube | 7.87e-10 | 41 |
future forebrain | 7.87e-10 | 41 |
regional part of nervous system | 9.05e-10 | 53 |
regional part of brain | 9.05e-10 | 53 |
telencephalon | 1.18e-09 | 34 |
ectoderm-derived structure | 2.75e-09 | 171 |
ectoderm | 2.75e-09 | 171 |
presumptive ectoderm | 2.75e-09 | 171 |
cerebral hemisphere | 3.31e-09 | 32 |
regional part of telencephalon | 5.01e-09 | 32 |
nervous system | 2.18e-08 | 89 |
brain grey matter | 2.84e-08 | 34 |
gray matter | 2.84e-08 | 34 |
neocortex | 3.42e-08 | 20 |
brain | 7.62e-08 | 68 |
future brain | 7.62e-08 | 68 |
central nervous system | 1.16e-07 | 81 |
regional part of cerebral cortex | 1.80e-07 | 22 |
adult organism | 2.85e-07 | 114 |
cerebral cortex | 2.97e-07 | 25 |
pallium | 2.97e-07 | 25 |
ecto-epithelium | 4.86e-07 | 104 |