FFCP PHASE1:Hg19::chr10:35484053..35484076,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1390 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2352 | |||
|TSSclassifier=weak | |||
|UniProt=Q03060,Q5W1B2,A8K3J7 | |||
|association_with_transcript=0bp_to_ENST00000356917,ENST00000473940,ENST00000487763,ENST00000488328,NM_182717,NM_182718,NM_182719,NM_182720,uc001iyl.2,uc001iym.2,uc001iyn.2,uc001iyo.2_5end | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_1_at_CREM_5end | |||
|id=chr10:35484053..35484076,+ | |||
|ontology_enrichment_celltype=CL:0000738!6.25e-37!140;CL:0002031!2.08e-27!124;CL:0002087!1.62e-26!119;CL:0000766!2.52e-26!76;CL:0000037!9.39e-26!172;CL:0000566!9.39e-26!172;CL:0000988!6.59e-24!182;CL:0002032!1.38e-23!165;CL:0000837!1.38e-23!165;CL:0000860!9.72e-23!45;CL:0000557!1.66e-21!71;CL:0002057!2.71e-21!42;CL:0000839!2.94e-20!70;CL:0002009!6.43e-20!65;CL:0002194!5.16e-19!63;CL:0000576!5.16e-19!63;CL:0000040!5.16e-19!63;CL:0000559!5.16e-19!63;CL:0000763!3.80e-16!112;CL:0000049!3.80e-16!112;CL:0000542!2.57e-07!53;CL:0000051!2.57e-07!53;CL:0000838!2.71e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.44e-20;33!CL:0002057;2.44e-20;33!CL:0000473;1.87e-17;39!CL:0000234;1.87e-17;39!CL:0000766;4.86e-12;69!CL:0000576;5.75e-12;48!CL:0002087;2.15e-08;104!CL:0000738;3.14e-08;136!CL:0000094;8.58e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,8.54e-38,136;CL:0002031,8.13e-28,120;CL:0002087,4.95e-27,115;CL:0000766,5.72e-27,72;CL:0000037,7.02e-27,168;CL:0000988,2.45e-25,177;CL:0002032,7.90e-25,161;CL:0000837,7.90e-25,161;CL:0000473,2.07e-23,48;CL:0000234,2.07e-23,48;CL:0000860,6.98e-23,42;CL:0002057,6.98e-23,42;CL:0000557,4.93e-22,67;CL:0000839,2.91e-20,66;CL:0002009,4.36e-20,61;CL:0002194,4.06e-19,59;CL:0000576,4.06e-19,59;CL:0000040,4.06e-19,59;CL:0000559,4.06e-19,59;CL:0000763,5.97e-17,108;CL:0000049,5.97e-17,108;CL:0000542,1.05e-07,53;CL:0000051,1.05e-07,53;CL:0000838,1.11e-07,52;CL:0000094,8.97e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;9.14e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.29e-21!102;UBERON:0003061!7.29e-21!102;UBERON:0002193!6.95e-19!112;UBERON:0002371!1.66e-18!80;UBERON:0001474!3.15e-18!86;UBERON:0004765!1.13e-14!101;UBERON:0001434!1.13e-14!101;UBERON:0002405!1.34e-12!115;UBERON:0007023!3.15e-09!115;UBERON:0003081!7.42e-09!216;UBERON:0002204!2.10e-08!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,7.37e-21,98;UBERON:0003061,7.37e-21,98;UBERON:0002371,4.19e-19,76;UBERON:0002193,7.53e-19,108;UBERON:0001474,8.50e-19,82;UBERON:0002405,1.86e-18,93;UBERON:0004765,1.45e-15,90;UBERON:0001434,4.40e-13,100;UBERON:0003081,1.97e-09,203;UBERON:0007023,5.37e-09,114 | |||
|phase1_expression=0.908391896352783,0.428201047781966,0.845726424575827,1.0007329835313,0.893922188854576,0,0,0,0,1.22866968250754,0.697801167972428,0,0,2.10402800032079,1.32558950291166,4.03395087871065,5.42425075221579,2.19093027116212,3.41552959153355,0.246242116153576,0,0,0.85870796139317,0.821246550437305,0.376627918784408,2.59805579543034,1.47781061009902,1.57421562627358,226.577823464969,142.016877295969,53.1019302974141,0,0,0,8.98619526731499,9.52533857665724,3.81680571135301,35.4557061460402,19.6533558520739,17.7948913986998,1.11957737119962,0.32389366601898,2.57575567634187,40.5661086194986,44.2114854115907,13.5847074265177,112.03079578854,136.507738823246,161.047312865454,1133.79571814159,849.428902850498,1043.83256272822,265.10942848646,284.658745460467,227.516497478494,163.582593062523,195.946615741533,229.442677618431,444.12772783018,509.314365969761,377.848241347233,249.697434241344,343.276954766828,185.407766481722,137.849388348577,150.924469767843,109.616715823221,985.899762467461,912.073624316932,1201.48868890871,115.631305002973,161.673882198541,87.3436189336841,5.49263744411049,4.46469029926591,1.46761051855863,17.5232664588532,9.4611442490149,12.5365957623723,4.27519115611873,3.77941686678271,2.73996230646951,1.75996244461323,2.73069305631066,3.55803701545422,1.28019066769952,0.400395987036012,2.87376219977242,0.661044872784862,2.86216126360609,15.9379631350646,46.9789751496751,56.5764377625339,10.5737062863221,147.974260627126,1.58030450865046,66.0944827582479,71.527958820348,100.33353151176,10.0311897234407,137.539196519375,84.7471572265173,19.4826728407911,134.58383191729,215.651524271581,108.108540556807,58.2228307094784,42.2701355094728,61.6481307433823,17.759293697197,16.0283010315792,17.9677913155733,96.6828391816634,66.3501253662488,33.4513676175926,19.3758976012838,167.084135210438,130.234801837917,130.052121698024,5.09704662918555,2.60433381542567,2.85135613334512,3.91495309602209,1.27986611154418,4.99722906209383,4.2619905367923,5.74789597844733,146.97131581083,91.9994273495265,59.3780055919476,0,1.34140171940727,1.02290049474824,1.80719576192283,0,3.76600949298142,7.15757352345989,6.32625331393427,0.756278537312543,0.443458794925128,1.31752178539689,2.88153966094968,0,0,4.86821090482025,3.30846500868608,6.64789802594326,53.6603904687019,42.8996183085096,45.3178151622069,1.19257444420023,0.860234595106124,1.73570250803797,0.56530794192401,1.25849830862972,1.92582629358047,0.626984899610432,1.03366703667732,2.49036383880697,7.02913286805807,2.01414658554573,27.3697958058665,0.488124115096339,1.47065232138347,2.43042584364528,1.25019619597712,1.34717623575702,0.900891843866578,3.06633274931766,0,0.916008719652036,648.359653785431,523.503356600239,0,0.993943903390637,0.886413581652058,0.397227542439656,0.573673241497627,0.709336764396714,0.560677600142307,1.06748995729705,0.74000264525148,2.17847724779836,0.67355336034844,3.59616186849609,2.57307626996383,0.576175924479999,0,1.87296046098192,0,0.149448680551801,0.352303495931295,0.161872944368132,0,1.02077085627447,0.982674538494144,0.723280468230358,1.18800285728205,0,0,0,1.0100166837244,0.250237039743928,1.10825646193673,0.877955241761676,0.30648779579902,0.901428353439581,2.26864366320042,0.538168907066586,0.427114777637135,0.847727604638247,0.600182192168805,0.515262646192195,0,0.18611685633159,0.675105328965065,0.0974370051611986,0.252433774244115,0.552299391853796,0.484938170456436,1.42003837006646,0.705264687593482,0.67824236924195,0,0,0,0.121973706129595,0.265059536642971,0.232387885739037,0.310983165046111,0.252320850875628,0,0,0,1.38134921352481,0,1.44375896333917,3.43089720115547,3.54027849164014,4.82022059766964,5.5146986366197,4.35758888184812,5.69449485866632,7.68538456512937,7.06397274451246,8.84918460976698,0,0,0.4115740113314,0,1.26755034821831,1.96565443335525,5.31710916013264,0.882926198829301,0.368965315629341,2.23038153388083,0,0,0.100528972411631,0.0925884451585296,0,0,1.44331342025273,0.34779121492523,0.587043471179108,1.58803092537181,1.38895653772983,2.28304982681518,0,0,3.69325509131096,3.51006397708857,7.28292695214768,0.93733833986777,0.16798212819886,0.283550194484773,0.0895585227028483,0.290633938513962,0,542.91488816133,29.6723222624572,91.846355184562,31.4181498448976,71.7057021861838,42.0356060214159,22.9193055334967,2.34434894420094,5.13217338068116,8.94599186518914,91.9049757002387,12.0047101704843,0.560655421726804,1.30788020649984,2.12681028880755,0.517086863031111,0,1.690605505112,0.26593811658487,1.04007436911366,0,0,0,0.57191197463259,0.542621605391443,0.823240336780769,0.977208552881205,1.42156779497018,1.58390374586686,0.602878754119172,2.61460037580088,3.09916272664377,6.08118903205952,6.02708509718552,6.32501818449095,0,0,0,0.723906533337896,1.02738161275192,0.537182889719687,1.56919201590938,131.025455534282,73.3133754522359,72.2571294254983,2.03275699377971,2.60279707715243,0,0.837581326671744,0.637938751653163,167.028566340222,68.8071356169257,255.279956276598,0.858840442033979,0.5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| |||
|short_description=p1@CREM | |||
}} |
Revision as of 02:34, 11 January 2014
Short description: | p1@CREM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CREM_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 0bp_to_ENST00000356917, ENST00000473940, ENST00000487763, ENST00000488328, NM_182717, NM_182718, NM_182719, NM_182720, uc001iyl.2, uc001iym.2, uc001iyn.2, uc001iyo.2_5end |
EntrezGene: | CREM |
HGNC: | 2352 |
UniProt: | Q03060Q5W1B2A8K3J7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 8.54e-38 | 136 |
hematopoietic lineage restricted progenitor cell | 8.13e-28 | 120 |
nongranular leukocyte | 4.95e-27 | 115 |
myeloid leukocyte | 5.72e-27 | 72 |
hematopoietic stem cell | 7.02e-27 | 168 |
hematopoietic cell | 2.45e-25 | 177 |
hematopoietic oligopotent progenitor cell | 7.90e-25 | 161 |
hematopoietic multipotent progenitor cell | 7.90e-25 | 161 |
defensive cell | 2.07e-23 | 48 |
phagocyte | 2.07e-23 | 48 |
classical monocyte | 6.98e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.98e-23 | 42 |
granulocyte monocyte progenitor cell | 4.93e-22 | 67 |
myeloid lineage restricted progenitor cell | 2.91e-20 | 66 |
macrophage dendritic cell progenitor | 4.36e-20 | 61 |
monopoietic cell | 4.06e-19 | 59 |
monocyte | 4.06e-19 | 59 |
monoblast | 4.06e-19 | 59 |
promonocyte | 4.06e-19 | 59 |
myeloid cell | 5.97e-17 | 108 |
common myeloid progenitor | 5.97e-17 | 108 |
lymphocyte | 1.05e-07 | 53 |
common lymphoid progenitor | 1.05e-07 | 53 |
lymphoid lineage restricted progenitor cell | 1.11e-07 | 52 |
granulocyte | 8.97e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 7.37e-21 | 98 |
blood island | 7.37e-21 | 98 |
bone marrow | 4.19e-19 | 76 |
hemolymphoid system | 7.53e-19 | 108 |
bone element | 8.50e-19 | 82 |
immune system | 1.86e-18 | 93 |
skeletal element | 1.45e-15 | 90 |
skeletal system | 4.40e-13 | 100 |
lateral plate mesoderm | 1.97e-09 | 203 |
adult organism | 5.37e-09 | 114 |