FFCP PHASE1:Hg19::chr10:17270706..17270720,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7431 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12692 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-147bp_to_ENST00000497849_5end | |||
|coexpression_cluster_id=C6 | |||
|description=CAGE_peak_7_at_VIM_5end | |||
|id=chr10:17270706..17270720,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.30e-26!42;CL:0000860!1.75e-24!45;CL:0000766!3.58e-17!76;CL:0002371!3.09e-15!591;CL:0000557!3.52e-14!71;CL:0002009!8.87e-14!65;CL:0002194!1.24e-13!63;CL:0000576!1.24e-13!63;CL:0000040!1.24e-13!63;CL:0000559!1.24e-13!63;CL:0000144!1.32e-13!625;CL:0000839!2.10e-13!70;CL:0000048!2.17e-12!430;CL:0000723!3.87e-11!436;CL:0000034!8.23e-11!444;CL:0000012!9.02e-11!682;CL:0000548!1.17e-10!679;CL:0000004!1.17e-10!679;CL:0000255!1.17e-10!679;CL:0000055!3.61e-10!180;CL:0000219!4.60e-10!390;CL:0002320!5.52e-10!365;CL:0000134!6.44e-10!358;CL:0000057!1.03e-08!75 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.04e-28;33!CL:0002057;1.04e-28;33!CL:0000473;1.41e-19;39!CL:0000234;1.41e-19;39!CL:0000576;4.83e-18;48!CL:0000766;2.15e-14;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.68e-36,42;CL:0002057,7.68e-36,42;CL:0000473,4.65e-30,48;CL:0000234,4.65e-30,48;CL:0000766,6.14e-28,72;CL:0002194,1.60e-23,59;CL:0000576,1.60e-23,59;CL:0000040,1.60e-23,59;CL:0000559,1.60e-23,59;CL:0000839,3.72e-23,66;CL:0000557,1.60e-22,67;CL:0002009,3.74e-22,61;CL:0000134,7.53e-14,354;CL:0002320,3.91e-13,361;CL:0000219,9.41e-13,386;CL:0000048,3.73e-12,427;CL:0000763,7.55e-12,108;CL:0000049,7.55e-12,108;CL:0000723,2.25e-11,433;CL:0000034,7.83e-11,441;CL:0000738,1.62e-09,136;CL:0000057,2.63e-08,76;CL:0002087,3.90e-08,115;CL:0002031,2.20e-07,120 | |||
|ontology_enrichment_development_v019=CL:0002057;4.44e-26;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!4.49e-15!216;UBERON:0004765!1.11e-13!101;UBERON:0001434!1.11e-13!101;UBERON:0002204!2.43e-13!167;UBERON:0001474!2.70e-13!86;UBERON:0002371!6.84e-13!80;UBERON:0002384!1.85e-10!375;UBERON:0002193!1.50e-09!112;UBERON:0002390!3.42e-09!102;UBERON:0003061!3.42e-09!102;UBERON:0000926!6.92e-08!448;UBERON:0004120!6.92e-08!448;UBERON:0006603!6.92e-08!448;UBERON:0002049!2.54e-07!79;UBERON:0007798!2.54e-07!79;UBERON:0002405!4.25e-07!115;UBERON:0000055!7.37e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.00e-20,76;UBERON:0001474,1.22e-19,82;UBERON:0001434,8.79e-18,100;UBERON:0004765,8.85e-17,90;UBERON:0002405,1.37e-15,93;UBERON:0003081,4.66e-14,203;UBERON:0002384,1.12e-13,371;UBERON:0002390,1.21e-13,98;UBERON:0003061,1.21e-13,98;UBERON:0002193,5.53e-13,108;UBERON:0002204,6.98e-11,167;UBERON:0000926,1.67e-08,315;UBERON:0004120,1.67e-08,315;UBERON:0006603,1.67e-08,315 | |||
|phase1_expression=0,0.428201047781966,0.422863212287913,1.0007329835313,0,0.872338524100369,2.53299878168311,1.26343974685366,1.30592814099919,0,0,0.436882744260345,1.05506791291381,1.11389717664042,0.662794751455832,0.672325146451775,0.602694528023977,0.730310090387373,2.92759679274304,1.35433163884467,1.22400414746552,1.56727360739044,0.572471974262113,1.50561867580173,1.12988375635323,0.0764134057479513,0.0821005894499457,0.157421562627358,21.6350352266897,11.1310525448192,30.1891440466348,0,0,0.369754010166788,0,0,1.17440175733939,28.8077612436576,30.2822115679914,27.3433697101973,0,0,0.257575567634187,5.37973483484389,5.66813915533214,7.27752183563449,8.13501629169896,8.63452564845834,8.6717783850629,12.9461576544968,7.94098190240212,9.22280696565482,14.479318590938,9.68227025375739,16.251178391321,7.71793592124679,6.00393530127261,3.37085226667627,18.6711174346251,10.5906578935111,16.6227652707751,5.93732340336089,8.37747362010854,6.39337125799041,22.346111374401,18.7237124148076,16.8162007228805,11.5574386018102,8.34372669472322,8.68755378820467,10.2917915447673,18.0456041633907,16.1395817594851,1.47878700418359,3.4016687994407,2.51590374610051,1.46027220490444,2.85336096398862,3.85741408072992,1.42506371870624,0.99458338599545,1.82664153764634,0,0,0,0,0,0,0,0,0,1.17447437874188,0.764546456250458,0,2.80254281490768,0.263384084775077,0.196709770113833,0,0.205601498999509,0,0,0,0,0.334231370655521,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0.604820229674197,0,0.144824403882799,0,0,0.255725123687061,1.44575660953827,0,1.30361867064741,0.795285947051099,1.94653948121054,0.661743720148475,1.33037638477538,0.790513071238134,0.261958150995425,0,0,0.324547393654683,0,0,1.19245312152671,0,0,2.18638648103376,2.58070378531837,1.73570250803797,2.26123176769604,1.25849830862972,1.10047216776027,1.67195973229448,0.516833518338658,0.35576626268671,1.00416183829401,3.22263453687318,0,1.70843440283719,0,0.81014194788176,0.357198913136319,0.44905874525234,0.675668882899933,1.53316637465883,1.89853131913626,2.01521918323448,3.9534125230819,0,0,0.496971951695318,1.2663051166458,1.58891016975863,1.14734648299525,1.06400514659507,0.560677600142307,0,1.48000529050296,0.933633106199299,0.67355336034844,0.490385709340376,0.151357427644931,1.15235184896,1.17160715916898,0.624320153660641,1.71141546463335,1.64393548606981,1.64408298101271,1.61872944368132,1.12360645361799,1.42907919878425,2.08818339430006,2.78979609174567,3.56400857184616,1.48360157567134,0,2.15585442544872,1.0100166837244,1.7516592782075,3.04770527032601,1.75591048352335,0.30648779579902,2.10333282469236,1.02088964844019,3.94657198515496,1.2813443329114,0,3.60109315301283,1.44273540933814,1.8034837803194,0.930584281657949,8.77636927654584,0.974370051611986,1.7670364197088,1.10459878370759,0.80823028409406,3.90510551768276,0.705264687593482,0.67824236924195,0,0,0.286804595389004,0,0.265059536642971,0.116193942869518,0.518305275076852,0.252320850875628,0,0,1.28648187638577,1.38134921352481,0.928735856063958,0,0,0.168584690078102,0.482022059766964,0.441175890929576,0,0.71181185733329,0.404493924480493,0,0,0.738155454624648,4.20725321410337,0,0,0,0,0,0,0,1.71567810298526,0.109750285408626,0,0,0,2.93227474779292,2.07986957055916,0,3.70977295920246,1.17408694235822,1.15493158208859,0.925971025153221,0.761016608938393,0,0,0,0,0,0,0.16798212819886,0.283550194484773,0.626909658919938,0,1.15014803749563,0.492663237895943,0.088048434013226,7.25648404392702,6.3412779503463,3.66103056936502,0.507983154337352,1.14596527667483,0,0,0,0,0.571652865261156,0.784917590417525,0.87192013766656,0.7333828582095,0.129271715757778,0,1.690605505112,1.32969058292435,1.04007436911366,1.02882949704857,0,1.3321108950805,0.714889968290738,0,0.823240336780769,1.62868092146868,0.355391948742546,0,0,0,0.199945982364114,0,1.00451418286425,0,0.958499421966331,0,5.70547620162874,0.144781306667579,0.61642896765115,0.716243852959582,0.448340575974109,2.36436912242313,3.45004119775228,3.59360501583295,1.77866236955724,1.30139853857622,1.54657762555539,0.335032530668698,0,0.749007023947182,2.99161459204025,2.90090859405225,0.858840442033979,0.500170521059677,0.271265023699736,1.87173775377726,1.60586089917446,0.946214490203608,2.34282829985426,2.10662269809403,0,2.0694614258501,1.32845119707087,1.29058417979192,1.39013783148933,0.391602314925481,0,1.03384013061444,8.19713963110744,8.11129439306177,0,0,1.5119514666484,0.248107807818777,1.2276957863045,1.12264037773229,0.384417447767103,0,0.482561763430822,0,1.23367755042124,1.9531789784444,1.88892458831761,1.03850885836724,2.09178681227927,0,0,0.0920809889358963,0.68888668898764,0.546273504020151,0.131124414959424,1.80479845162965,1.00119938235739,1.56869953835371,4.38417673959782,0.949964660035881,0,1.02056223165909,0.431831832204279,1.54227252690289,0.541892875087706,1.00337954770971,0.509752546090077,0,0.671624264166535,0,0,0.512900250232778,1.96808787419823,2.60302715731442,0.412164046590889,0.457847324091717,0.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| |||
|short_description=p7@VIM | |||
}} |
Revision as of 01:57, 11 January 2014
Short description: | p7@VIM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_VIM_5end |
Coexpression cluster: | C6_CD14_Eosinophils_Basophils_Peripheral_CD34_Natural_immature |
Association with transcript: | -147bp_to_ENST00000497849_5end |
EntrezGene: | VIM |
HGNC: | 12692 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.68e-36 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.68e-36 | 42 |
defensive cell | 4.65e-30 | 48 |
phagocyte | 4.65e-30 | 48 |
myeloid leukocyte | 6.14e-28 | 72 |
monopoietic cell | 1.60e-23 | 59 |
monocyte | 1.60e-23 | 59 |
monoblast | 1.60e-23 | 59 |
promonocyte | 1.60e-23 | 59 |
myeloid lineage restricted progenitor cell | 3.72e-23 | 66 |
granulocyte monocyte progenitor cell | 1.60e-22 | 67 |
macrophage dendritic cell progenitor | 3.74e-22 | 61 |
mesenchymal cell | 7.53e-14 | 354 |
connective tissue cell | 3.91e-13 | 361 |
motile cell | 9.41e-13 | 386 |
multi fate stem cell | 3.73e-12 | 427 |
myeloid cell | 7.55e-12 | 108 |
common myeloid progenitor | 7.55e-12 | 108 |
somatic stem cell | 2.25e-11 | 433 |
stem cell | 7.83e-11 | 441 |
leukocyte | 1.62e-09 | 136 |
fibroblast | 2.63e-08 | 76 |
nongranular leukocyte | 3.90e-08 | 115 |
hematopoietic lineage restricted progenitor cell | 2.20e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.00e-20 | 76 |
bone element | 1.22e-19 | 82 |
skeletal system | 8.79e-18 | 100 |
skeletal element | 8.85e-17 | 90 |
immune system | 1.37e-15 | 93 |
lateral plate mesoderm | 4.66e-14 | 203 |
connective tissue | 1.12e-13 | 371 |
hematopoietic system | 1.21e-13 | 98 |
blood island | 1.21e-13 | 98 |
hemolymphoid system | 5.53e-13 | 108 |
musculoskeletal system | 6.98e-11 | 167 |
mesoderm | 1.67e-08 | 315 |
mesoderm-derived structure | 1.67e-08 | 315 |
presumptive mesoderm | 1.67e-08 | 315 |