FFCP PHASE1:Hg19::chrX:147062891..147062896,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=158521|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26372|TSSclassifier=S|UniProt=Q8N0W7|association_with_transcript=42bp_to_ENST00000370467,NM_152578,uc004fcm.2_5end|coexpression_cluster_id=C2268|description=CAGE_peak_3_at_FMR1NB_5end|id=chrX:147062891..147062896,+|ontology_enrichment_celltype=CL:1000415!2.27e-10!2;CL:0000322!1.82e-07!3|ontology_enrichment_celltype_v019=CL:0000322;4.27e-34;3!CL:0002202;2.19e-12;9!CL:0002632;2.19e-12;9!CL:0000182;1.33e-09;12!CL:0002368;5.28e-09;13|ontology_enrichment_celltype_v019_2=CL:0000322,4.27e-34,3;CL:0002202,2.19e-12,9;CL:0002632,2.19e-12,9;CL:0000182,1.33e-09,12;CL:0002368,5.28e-09,13;CL:0000223,4.33e-08,58|ontology_enrichment_development_v019=UBERON:0001041;1.90e-14;30!UBERON:0004161;2.37e-10;11!UBERON:0009497;5.70e-09;13!CL:0000223;7.93e-07;58|ontology_enrichment_disease=DOID:1036!8.30e-21!8;DOID:3910!1.43e-10!2|ontology_enrichment_disease_v019=DOID:3910;2.74e-50;2!DOID:3908;4.21e-21;5!DOID:1325;1.65e-15;7!DOID:3904;1.65e-15;7!DOID:3905;2.19e-12;9!DOID:1324;5.55e-08;15!DOID:0050615;1.45e-07;16|ontology_enrichment_disease_v019_2=DOID:3910,2.74e-50,2;DOID:3908,4.21e-21,5;DOID:1325,1.65e-15,7;DOID:3904,1.65e-15,7;DOID:3905,2.19e-12,9;DOID:1324,5.55e-08,15;DOID:0050615,1.45e-07,16|ontology_enrichment_uberon=UBERON:0001282!1.08e-19!1;UBERON:0009842!1.08e-19!1;UBERON:0003704!1.08e-19!1;UBERON:0001171!1.08e-19!1;UBERON:0001172!1.08e-19!1;UBERON:0002294!2.18e-11!7;UBERON:0001173!2.18e-11!7;UBERON:0004912!2.18e-11!7;UBERON:0004903!1.43e-10!2;UBERON:0002173!1.43e-10!2;UBERON:0002186!1.43e-10!2;UBERON:0000473!4.84e-10!8;UBERON:0003135!1.51e-07!11;UBERON:0004821!1.82e-07!3;UBERON:0003215!1.82e-07!3;UBERON:0002299!1.82e-07!3;UBERON:0006524!1.82e-07!3;UBERON:0008874!1.82e-07!3;UBERON:0002169!1.82e-07!3;UBERON:0004894!1.82e-07!3;UBERON:0002110!2.47e-07!3;UBERON:0006242!2.47e-07!3|ontology_enrichment_uberon_v019=UBERON:0001282;2.55e-98;1!UBERON:0009842;2.55e-98;1!UBERON:0003704;2.55e-98;1!UBERON:0001171;2.55e-98;1!UBERON:0001172;2.55e-98;1!UBERON:0004903;2.74e-50;2!UBERON:0002173;2.74e-50;2!UBERON:0002186;2.74e-50;2!UBERON:0000058;2.00e-40;10!UBERON:0004821;4.27e-34;3!UBERON:0007499;4.27e-34;3!UBERON:0003215;4.27e-34;3!UBERON:0010368;4.27e-34;3!UBERON:0009911;4.27e-34;3!UBERON:0002299;4.27e-34;3!UBERON:0006524;4.27e-34;3!UBERON:0008874;4.27e-34;3!UBERON:0002169;4.27e-34;3!UBERON:0004894;4.27e-34;3!UBERON:0001280;5.96e-34;3!UBERON:0004647;5.96e-34;3!UBERON:0009856;5.56e-26;4!UBERON:0002394;7.14e-26;4!UBERON:0003928;7.14e-26;4!UBERON:0002294;1.91e-15;7!UBERON:0001173;1.91e-15;7!UBERON:0007196;5.55e-08;15!UBERON:0001558;5.55e-08;15!UBERON:0000353;5.93e-08;15|ontology_enrichment_uberon_v019_2=UBERON:0001282,2.55e-98,1;UBERON:0009842,2.55e-98,1;UBERON:0003704,2.55e-98,1;UBERON:0001171,2.55e-98,1;UBERON:0001172,2.55e-98,1;UBERON:0004903,2.74e-50,2;UBERON:0002173,2.74e-50,2;UBERON:0002186,2.74e-50,2;UBERON:0004821,4.27e-34,3;UBERON:0003215,4.27e-34,3;UBERON:0010368,4.27e-34,3;UBERON:0009911,4.27e-34,3;UBERON:0002299,4.27e-34,3;UBERON:0006524,4.27e-34,3;UBERON:0008874,4.27e-34,3;UBERON:0002169,4.27e-34,3;UBERON:0004894,4.27e-34,3;UBERON:0001280,5.96e-34,3;UBERON:0004647,5.96e-34,3;UBERON:0005171,5.96e-34,3;UBERON:0000058,5.37e-22,19;UBERON:0002394,9.07e-18,6;UBERON:0003928,9.07e-18,6;UBERON:0007499,4.64e-17,25;UBERON:0009856,1.86e-16,26;UBERON:0002294,2.45e-12,9;UBERON:0001173,2.45e-12,9;UBERON:0004912,2.45e-12,9;UBERON:0007196,5.55e-08,15;UBERON:0001558,5.55e-08,15;UBERON:0000353,5.93e-08,15|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.32231205497703,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07643550786903,0,0,0,0,0,0,0,0,0,0.225595660617181,0.392125068635479,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320635281006135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=158521 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26372 | |||
|TSSclassifier=S | |||
|UniProt=Q8N0W7 | |||
|association_with_transcript=42bp_to_ENST00000370467,NM_152578,uc004fcm.2_5end | |||
|coexpression_cluster_id=C2268 | |||
|description=CAGE_peak_3_at_FMR1NB_5end | |||
|id=chrX:147062891..147062896,+ | |||
|ontology_enrichment_celltype=CL:1000415!2.27e-10!2;CL:0000322!1.82e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000322;4.27e-34;3!CL:0002202;2.19e-12;9!CL:0002632;2.19e-12;9!CL:0000182;1.33e-09;12!CL:0002368;5.28e-09;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,4.27e-34,3;CL:0002202,2.19e-12,9;CL:0002632,2.19e-12,9;CL:0000182,1.33e-09,12;CL:0002368,5.28e-09,13;CL:0000223,4.33e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0001041;1.90e-14;30!UBERON:0004161;2.37e-10;11!UBERON:0009497;5.70e-09;13!CL:0000223;7.93e-07;58 | |||
|ontology_enrichment_disease=DOID:1036!8.30e-21!8;DOID:3910!1.43e-10!2 | |||
|ontology_enrichment_disease_v019=DOID:3910;2.74e-50;2!DOID:3908;4.21e-21;5!DOID:1325;1.65e-15;7!DOID:3904;1.65e-15;7!DOID:3905;2.19e-12;9!DOID:1324;5.55e-08;15!DOID:0050615;1.45e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,2.74e-50,2;DOID:3908,4.21e-21,5;DOID:1325,1.65e-15,7;DOID:3904,1.65e-15,7;DOID:3905,2.19e-12,9;DOID:1324,5.55e-08,15;DOID:0050615,1.45e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0001282!1.08e-19!1;UBERON:0009842!1.08e-19!1;UBERON:0003704!1.08e-19!1;UBERON:0001171!1.08e-19!1;UBERON:0001172!1.08e-19!1;UBERON:0002294!2.18e-11!7;UBERON:0001173!2.18e-11!7;UBERON:0004912!2.18e-11!7;UBERON:0004903!1.43e-10!2;UBERON:0002173!1.43e-10!2;UBERON:0002186!1.43e-10!2;UBERON:0000473!4.84e-10!8;UBERON:0003135!1.51e-07!11;UBERON:0004821!1.82e-07!3;UBERON:0003215!1.82e-07!3;UBERON:0002299!1.82e-07!3;UBERON:0006524!1.82e-07!3;UBERON:0008874!1.82e-07!3;UBERON:0002169!1.82e-07!3;UBERON:0004894!1.82e-07!3;UBERON:0002110!2.47e-07!3;UBERON:0006242!2.47e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001282;2.55e-98;1!UBERON:0009842;2.55e-98;1!UBERON:0003704;2.55e-98;1!UBERON:0001171;2.55e-98;1!UBERON:0001172;2.55e-98;1!UBERON:0004903;2.74e-50;2!UBERON:0002173;2.74e-50;2!UBERON:0002186;2.74e-50;2!UBERON:0000058;2.00e-40;10!UBERON:0004821;4.27e-34;3!UBERON:0007499;4.27e-34;3!UBERON:0003215;4.27e-34;3!UBERON:0010368;4.27e-34;3!UBERON:0009911;4.27e-34;3!UBERON:0002299;4.27e-34;3!UBERON:0006524;4.27e-34;3!UBERON:0008874;4.27e-34;3!UBERON:0002169;4.27e-34;3!UBERON:0004894;4.27e-34;3!UBERON:0001280;5.96e-34;3!UBERON:0004647;5.96e-34;3!UBERON:0009856;5.56e-26;4!UBERON:0002394;7.14e-26;4!UBERON:0003928;7.14e-26;4!UBERON:0002294;1.91e-15;7!UBERON:0001173;1.91e-15;7!UBERON:0007196;5.55e-08;15!UBERON:0001558;5.55e-08;15!UBERON:0000353;5.93e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001282,2.55e-98,1;UBERON:0009842,2.55e-98,1;UBERON:0003704,2.55e-98,1;UBERON:0001171,2.55e-98,1;UBERON:0001172,2.55e-98,1;UBERON:0004903,2.74e-50,2;UBERON:0002173,2.74e-50,2;UBERON:0002186,2.74e-50,2;UBERON:0004821,4.27e-34,3;UBERON:0003215,4.27e-34,3;UBERON:0010368,4.27e-34,3;UBERON:0009911,4.27e-34,3;UBERON:0002299,4.27e-34,3;UBERON:0006524,4.27e-34,3;UBERON:0008874,4.27e-34,3;UBERON:0002169,4.27e-34,3;UBERON:0004894,4.27e-34,3;UBERON:0001280,5.96e-34,3;UBERON:0004647,5.96e-34,3;UBERON:0005171,5.96e-34,3;UBERON:0000058,5.37e-22,19;UBERON:0002394,9.07e-18,6;UBERON:0003928,9.07e-18,6;UBERON:0007499,4.64e-17,25;UBERON:0009856,1.86e-16,26;UBERON:0002294,2.45e-12,9;UBERON:0001173,2.45e-12,9;UBERON:0004912,2.45e-12,9;UBERON:0007196,5.55e-08,15;UBERON:0001558,5.55e-08,15;UBERON:0000353,5.93e-08,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.32231205497703,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07643550786903,0,0,0,0,0,0,0,0,0,0.225595660617181,0.392125068635479,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320635281006135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0.535928260312357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@FMR1NB | |||
}} |
Revision as of 11:07, 14 September 2013
Short description: | p3@FMR1NB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_FMR1NB_5end |
Coexpression cluster: | C2268_cholangiocellular_testis_bronchioalveolar_gall_squamous_chronic_gastric |
Association with transcript: | 42bp_to_ENST00000370467, NM_152578, uc004fcm.2_5end |
EntrezGene: | FMR1NB |
HGNC: | 26372 |
UniProt: | Q8N0W7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 4.27e-34 | 3 |
epithelial cell of tracheobronchial tree | 2.19e-12 | 9 |
epithelial cell of lower respiratory tract | 2.19e-12 | 9 |
hepatocyte | 1.33e-09 | 12 |
respiratory epithelial cell | 5.28e-09 | 13 |
endodermal cell | 4.33e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
intralobular bile duct | 2.55e-98 | 1 |
acinus | 2.55e-98 | 1 |
intrahepatic bile duct | 2.55e-98 | 1 |
portal lobule | 2.55e-98 | 1 |
hepatic acinus | 2.55e-98 | 1 |
bronchoalveolar duct junction | 2.74e-50 | 2 |
alveolar duct | 2.74e-50 | 2 |
bronchiole | 2.74e-50 | 2 |
pulmonary alveolus epithelium | 4.27e-34 | 3 |
alveolus | 4.27e-34 | 3 |
pulmonary lobule | 4.27e-34 | 3 |
lobule | 4.27e-34 | 3 |
alveolus of lung | 4.27e-34 | 3 |
alveolar system | 4.27e-34 | 3 |
pulmonary acinus | 4.27e-34 | 3 |
alveolar sac | 4.27e-34 | 3 |
alveolar wall | 4.27e-34 | 3 |
liver parenchyma | 5.96e-34 | 3 |
liver lobule | 5.96e-34 | 3 |
hepatic duct | 5.96e-34 | 3 |
duct | 5.37e-22 | 19 |
bile duct | 9.07e-18 | 6 |
digestive system duct | 9.07e-18 | 6 |
epithelial sac | 4.64e-17 | 25 |
sac | 1.86e-16 | 26 |
biliary system | 2.45e-12 | 9 |
biliary tree | 2.45e-12 | 9 |
biliary bud | 2.45e-12 | 9 |
tracheobronchial tree | 5.55e-08 | 15 |
lower respiratory tract | 5.55e-08 | 15 |
parenchyma | 5.93e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 2.74e-50 | 2 |
non-small cell lung carcinoma | 4.21e-21 | 5 |
bronchus cancer | 1.65e-15 | 7 |
bronchogenic carcinoma | 1.65e-15 | 7 |
lung carcinoma | 2.19e-12 | 9 |
lung cancer | 5.55e-08 | 15 |
respiratory system cancer | 1.45e-07 | 16 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.