FFCP PHASE1:Hg19::chrX:46940233..46940248,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9104|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9989|TSSclassifier=S|UniProt=Q15493|association_with_transcript=-9bp_to_ENST00000336169_5end|coexpression_cluster_id=C5|description=CAGE_peak_3_at_RGN_5end|id=chrX:46940233..46940248,+|ontology_enrichment_celltype=CL:0000181!5.61e-23!12;CL:0000417!5.61e-23!12;CL:0000668!5.61e-23!12;CL:0000414!5.61e-23!12;CL:0000412!5.61e-23!12;CL:0000182!5.61e-23!12;CL:0000223!4.71e-07!59|ontology_enrichment_celltype_v019=CL:0000182;6.18e-38;12!CL:0002563;2.00e-10;4|ontology_enrichment_celltype_v019_2=CL:0000182,6.18e-38,12;CL:0000223,6.95e-15,58;CL:0002563,1.95e-10,4|ontology_enrichment_development_v019=UBERON:0004161;1.90e-30;11!UBERON:0009497;1.01e-25;13!UBERON:0003104;2.48e-14;31!UBERON:0001041;6.16e-11;30!UBERON:0000358;1.46e-10;1!CL:0000223;8.27e-10;58|ontology_enrichment_disease=DOID:114!2.60e-09!2|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!4.17e-22!19;UBERON:0006925!4.17e-22!19;UBERON:0008836!4.17e-22!19;UBERON:0008835!8.17e-19!22;UBERON:0003894!8.17e-19!22;UBERON:0005057!9.95e-19!26;UBERON:0009854!6.59e-18!23;UBERON:0007499!2.59e-16!25;UBERON:0009497!2.59e-16!25;UBERON:0000015!2.59e-16!25;UBERON:0002423!2.59e-16!25;UBERON:0006235!2.59e-16!25;UBERON:0004161!2.59e-16!25;UBERON:0009856!1.32e-15!26;UBERON:0002365!9.15e-13!31;UBERON:0002330!9.15e-13!31;UBERON:0005172!1.30e-12!55;UBERON:0005173!1.30e-12!55;UBERON:0004921!1.64e-12!129;UBERON:0004185!1.64e-12!129;UBERON:0003929!2.31e-11!54;UBERON:0000160!3.83e-11!27;UBERON:0002368!4.44e-11!35;UBERON:0002417!4.56e-11!61;UBERON:0000916!4.56e-11!61;UBERON:0005409!3.39e-10!35;UBERON:0000949!5.81e-10!45;UBERON:0001007!1.53e-09!155;UBERON:0001555!1.53e-09!155;UBERON:0007026!1.53e-09!155;UBERON:0004119!2.82e-09!169;UBERON:0000925!2.82e-09!169;UBERON:0006595!2.82e-09!169;UBERON:0005911!6.36e-09!82;UBERON:0005177!6.03e-08!107;UBERON:0002530!4.25e-07!59;UBERON:0000077!7.17e-07!130|ontology_enrichment_uberon_v019=UBERON:0002107;2.39e-39;19!UBERON:0006925;2.39e-39;19!UBERON:0002423;1.21e-29;25!UBERON:0002365;5.48e-23;31!UBERON:0002330;5.48e-23;31!UBERON:0002368;3.81e-20;33!UBERON:0000949;6.51e-17;43!UBERON:0000160;4.26e-13;17!UBERON:0001242;2.00e-10;4!UBERON:0001262;2.00e-10;4!UBERON:0004786;2.00e-10;4!UBERON:0004808;2.00e-10;4!UBERON:0001277;2.00e-10;4!UBERON:0001007;2.36e-10;81!UBERON:0005409;3.17e-10;22!UBERON:0002530;3.35e-09;57!UBERON:0005172;6.87e-09;52!UBERON:0005173;6.87e-09;52!UBERON:0002108;1.40e-08;4!UBERON:0002417;2.96e-08;58!UBERON:0000916;2.96e-08;58|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.39e-39,19;UBERON:0006925,2.39e-39,19;UBERON:0008836,2.39e-39,19;UBERON:0008835,7.79e-34,22;UBERON:0003894,7.79e-34,22;UBERON:0009854,2.57e-32,23;UBERON:0007499,1.21e-29,25;UBERON:0009497,1.21e-29,25;UBERON:0000015,1.21e-29,25;UBERON:0002423,1.21e-29,25;UBERON:0006235,1.21e-29,25;UBERON:0004161,1.21e-29,25;UBERON:0009856,1.85e-28,26;UBERON:0002365,1.10e-23,31;UBERON:0002330,1.10e-23,31;UBERON:0003929,1.73e-23,54;UBERON:0002368,7.58e-21,35;UBERON:0000949,1.14e-19,45;UBERON:0004921,1.33e-15,118;UBERON:0005911,7.78e-15,82;UBERON:0002530,1.04e-14,59;UBERON:0000160,4.26e-13,17;UBERON:0005172,4.32e-13,54;UBERON:0005173,4.32e-13,54;UBERON:0001007,2.87e-12,145;UBERON:0001555,2.87e-12,145;UBERON:0007026,2.87e-12,145;UBERON:0002417,1.17e-11,60;UBERON:0000916,1.17e-11,60;UBERON:0004119,6.76e-11,160;UBERON:0000925,6.76e-11,160;UBERON:0006595,6.76e-11,160;UBERON:0001242,1.95e-10,4;UBERON:0001262,1.95e-10,4;UBERON:0004786,1.95e-10,4;UBERON:0004808,1.95e-10,4;UBERON:0001277,1.95e-10,4;UBERON:0005409,4.98e-09,25;UBERON:0002108,1.43e-08,4;UBERON:0011216,3.56e-08,223;UBERON:0005177,5.91e-08,101;UBERON:0001041,1.18e-07,87;UBERON:0000490,2.28e-07,148|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,50.7020139287323,52.0898424839142,34.8566044942028,0,9.9620635219922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.7896154169214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,82.9480143764164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,87.9303099255117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9104 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9989 | |||
|TSSclassifier=S | |||
|UniProt=Q15493 | |||
|association_with_transcript=-9bp_to_ENST00000336169_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_3_at_RGN_5end | |||
|id=chrX:46940233..46940248,+ | |||
|ontology_enrichment_celltype=CL:0000181!5.61e-23!12;CL:0000417!5.61e-23!12;CL:0000668!5.61e-23!12;CL:0000414!5.61e-23!12;CL:0000412!5.61e-23!12;CL:0000182!5.61e-23!12;CL:0000223!4.71e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;6.18e-38;12!CL:0002563;2.00e-10;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,6.18e-38,12;CL:0000223,6.95e-15,58;CL:0002563,1.95e-10,4 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.90e-30;11!UBERON:0009497;1.01e-25;13!UBERON:0003104;2.48e-14;31!UBERON:0001041;6.16e-11;30!UBERON:0000358;1.46e-10;1!CL:0000223;8.27e-10;58 | |||
|ontology_enrichment_disease=DOID:114!2.60e-09!2 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!4.17e-22!19;UBERON:0006925!4.17e-22!19;UBERON:0008836!4.17e-22!19;UBERON:0008835!8.17e-19!22;UBERON:0003894!8.17e-19!22;UBERON:0005057!9.95e-19!26;UBERON:0009854!6.59e-18!23;UBERON:0007499!2.59e-16!25;UBERON:0009497!2.59e-16!25;UBERON:0000015!2.59e-16!25;UBERON:0002423!2.59e-16!25;UBERON:0006235!2.59e-16!25;UBERON:0004161!2.59e-16!25;UBERON:0009856!1.32e-15!26;UBERON:0002365!9.15e-13!31;UBERON:0002330!9.15e-13!31;UBERON:0005172!1.30e-12!55;UBERON:0005173!1.30e-12!55;UBERON:0004921!1.64e-12!129;UBERON:0004185!1.64e-12!129;UBERON:0003929!2.31e-11!54;UBERON:0000160!3.83e-11!27;UBERON:0002368!4.44e-11!35;UBERON:0002417!4.56e-11!61;UBERON:0000916!4.56e-11!61;UBERON:0005409!3.39e-10!35;UBERON:0000949!5.81e-10!45;UBERON:0001007!1.53e-09!155;UBERON:0001555!1.53e-09!155;UBERON:0007026!1.53e-09!155;UBERON:0004119!2.82e-09!169;UBERON:0000925!2.82e-09!169;UBERON:0006595!2.82e-09!169;UBERON:0005911!6.36e-09!82;UBERON:0005177!6.03e-08!107;UBERON:0002530!4.25e-07!59;UBERON:0000077!7.17e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.39e-39;19!UBERON:0006925;2.39e-39;19!UBERON:0002423;1.21e-29;25!UBERON:0002365;5.48e-23;31!UBERON:0002330;5.48e-23;31!UBERON:0002368;3.81e-20;33!UBERON:0000949;6.51e-17;43!UBERON:0000160;4.26e-13;17!UBERON:0001242;2.00e-10;4!UBERON:0001262;2.00e-10;4!UBERON:0004786;2.00e-10;4!UBERON:0004808;2.00e-10;4!UBERON:0001277;2.00e-10;4!UBERON:0001007;2.36e-10;81!UBERON:0005409;3.17e-10;22!UBERON:0002530;3.35e-09;57!UBERON:0005172;6.87e-09;52!UBERON:0005173;6.87e-09;52!UBERON:0002108;1.40e-08;4!UBERON:0002417;2.96e-08;58!UBERON:0000916;2.96e-08;58 | |||
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|short_description=p3@RGN | |||
}} |
Revision as of 11:59, 14 September 2013
Short description: | p3@RGN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_RGN_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -9bp_to_ENST00000336169_5end |
EntrezGene: | RGN |
HGNC: | 9989 |
UniProt: | Q15493 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 6.18e-38 | 12 |
endodermal cell | 6.95e-15 | 58 |
intestinal epithelial cell | 1.95e-10 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.