FFCP PHASE1:Hg19::chrX:38186665..38186679,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6103|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10295|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000482855_5end|coexpression_cluster_id=C448|description=CAGE_peak_8_at_RPGR_5end|id=chrX:38186665..38186679,-|ontology_enrichment_celltype=CL:0000738!2.96e-29!140;CL:0000037!2.20e-23!172;CL:0000566!2.20e-23!172;CL:0002087!2.87e-23!119;CL:0002057!7.76e-23!42;CL:0002032!2.21e-22!165;CL:0000837!2.21e-22!165;CL:0000860!6.08e-22!45;CL:0000988!1.40e-21!182;CL:0000766!5.25e-21!76;CL:0002031!1.42e-20!124;CL:0000763!4.67e-14!112;CL:0000049!4.67e-14!112;CL:0000557!1.02e-13!71;CL:0002009!1.10e-13!65;CL:0002194!2.22e-13!63;CL:0000576!2.22e-13!63;CL:0000040!2.22e-13!63;CL:0000559!2.22e-13!63;CL:0000839!4.54e-13!70;CL:0000094!1.93e-12!8;CL:0002393!1.20e-09!9;CL:0002397!1.20e-09!9;CL:0000081!1.98e-08!11;CL:0000542!2.99e-08!53;CL:0000051!2.99e-08!53;CL:0000838!1.03e-07!52|ontology_enrichment_celltype_v019=CL:0000094;3.97e-53;8!CL:0000081;1.74e-38;11!CL:0000775;2.61e-27;3!CL:0000771;6.42e-19;2!CL:0002393;1.15e-13;6!CL:0002397;1.15e-13;6!CL:0000767;1.89e-12;3!CL:0000236;3.54e-11;13!CL:0000766;1.49e-09;69!CL:0002087;5.36e-07;104|ontology_enrichment_celltype_v019_2=CL:0000094,4.46e-53,8;CL:0000081,1.89e-38,11;CL:0000738,1.76e-27,136;CL:0000775,2.50e-27,3;CL:0000037,1.15e-21,168;CL:0000766,5.74e-21,72;CL:0002032,1.90e-20,161;CL:0000837,1.90e-20,161;CL:0000988,2.10e-20,177;CL:0000771,6.43e-19,2;CL:0002087,3.25e-14,115;CL:0000763,2.95e-13,108;CL:0000049,2.95e-13,108;CL:0000767,2.12e-12,3;CL:0002031,1.33e-11,120;CL:0000236,2.04e-10,14;CL:0000860,2.49e-09,42;CL:0002057,2.49e-09,42;CL:0002393,2.56e-09,9;CL:0002397,2.56e-09,9;CL:0000134,1.61e-08,354;CL:0002320,2.76e-08,361;CL:0000473,4.54e-08,48;CL:0000234,4.54e-08,48;CL:0000219,1.85e-07,386;CL:0000838,1.91e-07,52;CL:0000542,2.72e-07,53;CL:0000051,2.72e-07,53;CL:0000034,5.23e-07,441|ontology_enrichment_development_v019=CL:0002057;5.97e-07;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001474!3.00e-11!86;UBERON:0002371!5.24e-11!80;UBERON:0002390!4.28e-09!102;UBERON:0003061!4.28e-09!102;UBERON:0004765!4.60e-08!101;UBERON:0001434!4.60e-08!101;UBERON:0002193!4.82e-08!112|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002384,5.76e-08,371|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0.0764134057479513,0,0,1.57345710739562,0.383829398097213,2.16742572642506,0,0,0,0.0774672005803016,0.284338464974843,0,2.21598163412751,1.80490002723128,5.20826089718044,0,0,0,0,0.377875943688809,0.242584061187816,0,0,0.929119112685311,0,0,0,0.689491361473237,0,1.35426486594342,0.376484679085209,0.272906150057846,0,0.612167784741805,0.320929027076094,1.27867425159808,0,0,0,2.32167390902867,0.56738522469114,1.86846674698672,0.502497330513487,0.521482918420201,0.217188844705117,0.605399502633369,0.368277635987565,0.632924774881769,0,0.212604299965044,0.419317291016752,0.22465726229299,0.450530678524519,0.64290234678832,0.285012743741249,0.59675003159727,0.91332076882317,0,0,0,1.70692089026603,0,0,0.661044872784862,0,13.6611112586268,8.80855784056408,6.49864487812889,0,1.68152568894461,0.263384084775077,0.983548850569165,0.786021525498329,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0.301150238155546,0,0,0,0,1.61285394579786,1.33720097891754,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0.367663080345869,0,0.0892997282840798,0.22452937262617,0,0,0,0,9.22462922052443,3.87780264148325,0,0,0,0,0,0.354668382198357,0,0,0,0,0.134710672069688,0,0.151357427644931,0,0,0,0,0.149448680551801,0,0,0.140450806702248,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.761016608938393,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.88369703398466,0,0,0,0,0,0,0,0,0,0.1466765716419,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0.788123040807709,0.646882724578552,1.02674429023799,0,0,0,0,0,2.24702107184155,5.9832291840805,9.11714129559278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,3.8828556147351,0.106727557803444,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0.107420244868274,0,0.0852266274161009,0,0,0,0.382838137483752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0.383010740264733,0,0,0,0.228234679033192,0.626719583092093,0,0,0,0,0,0.343505344755765,0,0.223676107892416,0,0,0,0,0,0,0,0,0.2930163585437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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6103 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10295 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000482855_5end | |||
|coexpression_cluster_id=C448 | |||
|description=CAGE_peak_8_at_RPGR_5end | |||
|id=chrX:38186665..38186679,- | |||
|ontology_enrichment_celltype=CL:0000738!2.96e-29!140;CL:0000037!2.20e-23!172;CL:0000566!2.20e-23!172;CL:0002087!2.87e-23!119;CL:0002057!7.76e-23!42;CL:0002032!2.21e-22!165;CL:0000837!2.21e-22!165;CL:0000860!6.08e-22!45;CL:0000988!1.40e-21!182;CL:0000766!5.25e-21!76;CL:0002031!1.42e-20!124;CL:0000763!4.67e-14!112;CL:0000049!4.67e-14!112;CL:0000557!1.02e-13!71;CL:0002009!1.10e-13!65;CL:0002194!2.22e-13!63;CL:0000576!2.22e-13!63;CL:0000040!2.22e-13!63;CL:0000559!2.22e-13!63;CL:0000839!4.54e-13!70;CL:0000094!1.93e-12!8;CL:0002393!1.20e-09!9;CL:0002397!1.20e-09!9;CL:0000081!1.98e-08!11;CL:0000542!2.99e-08!53;CL:0000051!2.99e-08!53;CL:0000838!1.03e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000094;3.97e-53;8!CL:0000081;1.74e-38;11!CL:0000775;2.61e-27;3!CL:0000771;6.42e-19;2!CL:0002393;1.15e-13;6!CL:0002397;1.15e-13;6!CL:0000767;1.89e-12;3!CL:0000236;3.54e-11;13!CL:0000766;1.49e-09;69!CL:0002087;5.36e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000094,4.46e-53,8;CL:0000081,1.89e-38,11;CL:0000738,1.76e-27,136;CL:0000775,2.50e-27,3;CL:0000037,1.15e-21,168;CL:0000766,5.74e-21,72;CL:0002032,1.90e-20,161;CL:0000837,1.90e-20,161;CL:0000988,2.10e-20,177;CL:0000771,6.43e-19,2;CL:0002087,3.25e-14,115;CL:0000763,2.95e-13,108;CL:0000049,2.95e-13,108;CL:0000767,2.12e-12,3;CL:0002031,1.33e-11,120;CL:0000236,2.04e-10,14;CL:0000860,2.49e-09,42;CL:0002057,2.49e-09,42;CL:0002393,2.56e-09,9;CL:0002397,2.56e-09,9;CL:0000134,1.61e-08,354;CL:0002320,2.76e-08,361;CL:0000473,4.54e-08,48;CL:0000234,4.54e-08,48;CL:0000219,1.85e-07,386;CL:0000838,1.91e-07,52;CL:0000542,2.72e-07,53;CL:0000051,2.72e-07,53;CL:0000034,5.23e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;5.97e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!3.00e-11!86;UBERON:0002371!5.24e-11!80;UBERON:0002390!4.28e-09!102;UBERON:0003061!4.28e-09!102;UBERON:0004765!4.60e-08!101;UBERON:0001434!4.60e-08!101;UBERON:0002193!4.82e-08!112 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,5.76e-08,371 | |||
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|short_description=p8@RPGR | |||
}} |
Revision as of 11:49, 14 September 2013
Short description: | p8@RPGR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_RPGR_5end |
Coexpression cluster: | C448_Eosinophils_CD19_Neutrophils_immature_CD14_CD34_CD4 |
Association with transcript: | 0bp_to_ENST00000482855_5end |
EntrezGene: | RPGR |
HGNC: | 10295 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte | 4.46e-53 | 8 |
blood cell | 1.89e-38 | 11 |
leukocyte | 1.76e-27 | 136 |
neutrophil | 2.50e-27 | 3 |
hematopoietic stem cell | 1.15e-21 | 168 |
myeloid leukocyte | 5.74e-21 | 72 |
hematopoietic oligopotent progenitor cell | 1.90e-20 | 161 |
hematopoietic multipotent progenitor cell | 1.90e-20 | 161 |
hematopoietic cell | 2.10e-20 | 177 |
eosinophil | 6.43e-19 | 2 |
nongranular leukocyte | 3.25e-14 | 115 |
myeloid cell | 2.95e-13 | 108 |
common myeloid progenitor | 2.95e-13 | 108 |
basophil | 2.12e-12 | 3 |
hematopoietic lineage restricted progenitor cell | 1.33e-11 | 120 |
B cell | 2.04e-10 | 14 |
classical monocyte | 2.49e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.49e-09 | 42 |
intermediate monocyte | 2.56e-09 | 9 |
CD14-positive, CD16-positive monocyte | 2.56e-09 | 9 |
mesenchymal cell | 1.61e-08 | 354 |
connective tissue cell | 2.76e-08 | 361 |
defensive cell | 4.54e-08 | 48 |
phagocyte | 4.54e-08 | 48 |
motile cell | 1.85e-07 | 386 |
lymphoid lineage restricted progenitor cell | 1.91e-07 | 52 |
lymphocyte | 2.72e-07 | 53 |
common lymphoid progenitor | 2.72e-07 | 53 |
stem cell | 5.23e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 5.76e-08 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.