FFCP PHASE1:Hg19::chr9:131445928..131445931,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6418|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10760|TSSclassifier=W|UniProt=Q01105,Q5VXV3|association_with_transcript=-2bp_to_ENST00000372692,NM_001122821,uc004bvt.3_5end|description=CAGE_peak_9_at_SET_5end|id=chr9:131445928..131445931,+|ontology_enrichment_celltype=CL:0000066!8.51e-12!254;CL:0000548!2.99e-08!679;CL:0000004!2.99e-08!679;CL:0000255!2.99e-08!679;CL:0000012!8.23e-08!682|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0003056;1.92e-08;3!UBERON:0005425;5.98e-07;1!UBERON:0008425;5.98e-07;1!UBERON:0003099;5.98e-07;1!UBERON:0003852;5.98e-07;1|ontology_enrichment_disease=DOID:14566!1.28e-16!239;DOID:162!4.11e-16!235;DOID:0050687!9.87e-13!143;DOID:305!4.97e-11!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:305,1.16e-07,106;DOID:0050687,7.99e-07,143|ontology_enrichment_uberon=UBERON:0004119!9.88e-08!169;UBERON:0000925!9.88e-08!169;UBERON:0006595!9.88e-08!169;UBERON:0001007!1.23e-07!155;UBERON:0001555!1.23e-07!155;UBERON:0007026!1.23e-07!155|ontology_enrichment_uberon_v019=UBERON:0003714;3.09e-12;2!UBERON:0001737;3.50e-10;9!UBERON:0001557;3.50e-10;9!UBERON:0000941;5.98e-07;1!UBERON:0007195;5.98e-07;1!UBERON:0005705;5.98e-07;1!UBERON:0001785;5.98e-07;1!UBERON:0002464;5.98e-07;1!UBERON:0004904;5.98e-07;1!UBERON:0008193;5.98e-07;1!UBERON:0001021;5.98e-07;1!UBERON:0010912;5.98e-07;1!UBERON:0002514;5.98e-07;1!UBERON:0003457;5.98e-07;1!UBERON:0008907;5.98e-07;1!UBERON:0008001;5.98e-07;1!UBERON:0007213;5.98e-07;1!UBERON:0009891;5.98e-07;1!UBERON:0007914;5.98e-07;1!UBERON:0007375;5.98e-07;1!UBERON:0003323;5.98e-07;1!UBERON:0010258;5.98e-07;1!UBERON:0005253;5.98e-07;1!UBERON:0007842;5.98e-07;1!UBERON:0002397;5.98e-07;1!UBERON:0003113;5.98e-07;1!UBERON:0003277;5.98e-07;1!UBERON:0001709;5.98e-07;1!UBERON:0002244;5.98e-07;1!UBERON:0005620;5.98e-07;1!UBERON:0010364;5.98e-07;1!UBERON:0004288;5.98e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0003714,1.49e-12,2;UBERON:0000076,1.66e-11,8;UBERON:0001737,1.54e-10,9;UBERON:0005085,2.21e-10,31;UBERON:0001456,2.00e-08,22;UBERON:0000941,4.78e-07,1;UBERON:0001785,4.78e-07,1;UBERON:0002464,4.78e-07,1;UBERON:0004904,4.78e-07,1;UBERON:0001021,4.78e-07,1;UBERON:0003902,4.78e-07,1;UBERON:0005425,4.78e-07,1;UBERON:0007195,9.51e-07,1|phase1_expression=0.181678379270557,0,0.281908808191942,0,0,0,0,0,0,0,0,0.218441372130172,0,0.495065411840187,0.331397375727916,0.672325146451775,0,0,0,0.492484232307152,0,0.313454721478088,0.286235987131057,0.547497700291537,0.376627918784408,0.382067028739756,0.492603536699674,0.865818594450472,0,0,0,0,0,0.369754010166788,1.31694240986513,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.383587685530591,0,0.50133791063589,0.144846518960824,0.795285947051099,0,0.378139268656271,1.10864698731282,0.175669571386252,0.0654895377488563,0,0,0.324547393654683,0,0.132957960518865,0,0.571994910780128,0,0.596287222100115,0.860234595106124,0.347140501607594,0.56530794192401,0,0,0.208994966536811,0.516833518338658,0.71153252537342,0.33472061276467,0,0,0.24406205754817,0,0,0.803697554556718,0.22452937262617,0.450445921933289,0,0,0.366403487860815,0,0,0.436094052142534,0,0.506522046658319,0.264818361626438,0,0.709336764396714,0.560677600142307,1.06748995729705,0.24666754841716,0,0.269421344139376,0.326923806226917,0.454072282934794,0.576175924479999,0.70296429550139,0.624320153660641,0,0.149448680551801,0.469737994575059,0.485618833104395,0.140450806702248,0.816616685019573,0.368502951935304,0.413303124703062,0,0,0,0,0.168336113954066,0.625592599359821,0.277064115484183,0,0.612975591598039,0.150238058906597,0.340296549480063,0,0,0.211931901159562,0.300091096084402,0.103052529238439,0.515281080091258,0,0.168776332241266,0.0974370051611986,0,0.184099797284599,0,0,0,0.169560592310488,0,0.272746120590835,0.286804595389004,0.121973706129595,0.132529768321485,0.116193942869518,0.310983165046111,0,0.36497735907583,1.56449532329816,0.643240938192885,0,0.464367928031979,0,1.18306800039844,0.842923450390509,1.68707720918437,0.992645754591546,1.74303555273925,0.237270619111097,0.539325232640658,1.76599318612811,0.38474715694639,0,0,0.4115740113314,0,0,0,0,0,0.368965315629341,0.343135620597051,0.329250856225877,0,0.301586917234893,0.370353780634118,0,0,1.44331342025273,0.115930404975077,1.05667824812239,0.144366447761074,0,0.380508304469197,0,0,0,0.234004265139238,0,0.93733833986777,0.16798212819886,0.992425680696705,0.626909658919938,1.74380363108377,0,0,0.088048434013226,0,0,0,0.126995788584338,0.381988425558278,0,0,0.308482478109971,0.300343057843917,0.571652865261156,0.336393253036082,0,1.0267360014933,0.129271715757778,0,0.845302752556,0,0,0.257207374262142,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6418 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10760 | |||
|TSSclassifier=W | |||
|UniProt=Q01105,Q5VXV3 | |||
|association_with_transcript=-2bp_to_ENST00000372692,NM_001122821,uc004bvt.3_5end | |||
|description=CAGE_peak_9_at_SET_5end | |||
|id=chr9:131445928..131445931,+ | |||
|ontology_enrichment_celltype=CL:0000066!8.51e-12!254;CL:0000548!2.99e-08!679;CL:0000004!2.99e-08!679;CL:0000255!2.99e-08!679;CL:0000012!8.23e-08!682 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.92e-08;3!UBERON:0005425;5.98e-07;1!UBERON:0008425;5.98e-07;1!UBERON:0003099;5.98e-07;1!UBERON:0003852;5.98e-07;1 | |||
|ontology_enrichment_disease=DOID:14566!1.28e-16!239;DOID:162!4.11e-16!235;DOID:0050687!9.87e-13!143;DOID:305!4.97e-11!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.16e-07,106;DOID:0050687,7.99e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.88e-08!169;UBERON:0000925!9.88e-08!169;UBERON:0006595!9.88e-08!169;UBERON:0001007!1.23e-07!155;UBERON:0001555!1.23e-07!155;UBERON:0007026!1.23e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0003714;3.09e-12;2!UBERON:0001737;3.50e-10;9!UBERON:0001557;3.50e-10;9!UBERON:0000941;5.98e-07;1!UBERON:0007195;5.98e-07;1!UBERON:0005705;5.98e-07;1!UBERON:0001785;5.98e-07;1!UBERON:0002464;5.98e-07;1!UBERON:0004904;5.98e-07;1!UBERON:0008193;5.98e-07;1!UBERON:0001021;5.98e-07;1!UBERON:0010912;5.98e-07;1!UBERON:0002514;5.98e-07;1!UBERON:0003457;5.98e-07;1!UBERON:0008907;5.98e-07;1!UBERON:0008001;5.98e-07;1!UBERON:0007213;5.98e-07;1!UBERON:0009891;5.98e-07;1!UBERON:0007914;5.98e-07;1!UBERON:0007375;5.98e-07;1!UBERON:0003323;5.98e-07;1!UBERON:0010258;5.98e-07;1!UBERON:0005253;5.98e-07;1!UBERON:0007842;5.98e-07;1!UBERON:0002397;5.98e-07;1!UBERON:0003113;5.98e-07;1!UBERON:0003277;5.98e-07;1!UBERON:0001709;5.98e-07;1!UBERON:0002244;5.98e-07;1!UBERON:0005620;5.98e-07;1!UBERON:0010364;5.98e-07;1!UBERON:0004288;5.98e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003714,1.49e-12,2;UBERON:0000076,1.66e-11,8;UBERON:0001737,1.54e-10,9;UBERON:0005085,2.21e-10,31;UBERON:0001456,2.00e-08,22;UBERON:0000941,4.78e-07,1;UBERON:0001785,4.78e-07,1;UBERON:0002464,4.78e-07,1;UBERON:0004904,4.78e-07,1;UBERON:0001021,4.78e-07,1;UBERON:0003902,4.78e-07,1;UBERON:0005425,4.78e-07,1;UBERON:0007195,9.51e-07,1 | |||
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| |||
|short_description=p9@SET | |||
}} |
Revision as of 07:42, 14 September 2013
Short description: | p9@SET |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_SET_5end |
Coexpression cluster: | NA |
Association with transcript: | -2bp_to_ENST00000372692, NM_001122821, uc004bvt.3_5end |
EntrezGene: | SET |
HGNC: | 10760 |
UniProt: | Q01105Q5VXV3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tissue | 1.49e-12 | 2 |
external ectoderm | 1.66e-11 | 8 |
larynx | 1.54e-10 | 9 |
ectodermal placode | 2.21e-10 | 31 |
face | 2.00e-08 | 22 |
cranial nerve II | 4.78e-07 | 1 |
cranial nerve | 4.78e-07 | 1 |
nerve trunk | 4.78e-07 | 1 |
nerve connecting eye with brain | 4.78e-07 | 1 |
nerve | 4.78e-07 | 1 |
retinal neural layer | 4.78e-07 | 1 |
presumptive neural retina | 4.78e-07 | 1 |
stroma of bone marrow | 9.51e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.16e-07 | 106 |
cell type cancer | 7.99e-07 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.