FFCP PHASE1:Hg19::chr8:110535027..110535055,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=93035|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20313|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000534623_5end|coexpression_cluster_id=C995|description=CAGE_peak_2_at_PKHD1L1_5end|id=chr8:110535027..110535055,+|ontology_enrichment_celltype=CL:0000945!6.04e-47!24;CL:0000826!6.04e-47!24;CL:0000236!2.77e-26!14;CL:0000542!1.14e-22!53;CL:0000051!1.14e-22!53;CL:0000838!3.47e-21!52;CL:0002087!6.77e-08!119|ontology_enrichment_celltype_v019=CL:0000945;5.60e-103;24!CL:0000236;1.95e-56;13!CL:0000542;1.19e-29;53!CL:0002087;3.09e-08;104!CL:0000946;6.06e-07;1!CL:0000786;6.06e-07;1|ontology_enrichment_celltype_v019_2=CL:0000945,5.34e-103,24;CL:0000826,5.34e-103,24;CL:0000236,1.06e-61,14;CL:0000542,2.44e-48,53;CL:0000051,2.44e-48,53;CL:0000838,7.33e-45,52;CL:0002087,3.94e-21,115;CL:0002031,4.03e-18,120;CL:0000738,4.55e-17,136;CL:0002032,1.31e-13,161;CL:0000837,1.31e-13,161;CL:0000037,7.94e-13,168;CL:0000785,6.40e-12,2;CL:0000955,6.40e-12,2;CL:0000818,6.40e-12,2;CL:0000954,6.40e-12,2;CL:0000816,6.40e-12,2;CL:0000988,6.55e-12,177;CL:0000817,3.19e-08,3;CL:0000946,6.23e-07,1;CL:0000786,6.23e-07,1;CL:0000980,6.23e-07,1|ontology_enrichment_development_v019=CL:0000051;1.19e-29;53!CL:0000954;6.40e-12;2|ontology_enrichment_disease=DOID:0060058!1.80e-10!10|ontology_enrichment_disease_v019=DOID:0060058;2.64e-18;10!DOID:630;6.96e-07;1!DOID:0050177;6.96e-07;1!DOID:0050427;6.96e-07;1!DOID:12603;7.35e-07;1|ontology_enrichment_disease_v019_2=DOID:0060058,2.64e-18,10;DOID:630,6.96e-07,1;DOID:0050177,6.96e-07,1;DOID:0050427,6.96e-07,1;DOID:12603,7.35e-07,1|ontology_enrichment_uberon=UBERON:0007023!5.29e-18!115;UBERON:0004177!4.62e-10!7;UBERON:0000178!1.43e-07!15;UBERON:0000179!1.43e-07!15;UBERON:0000463!1.43e-07!15;UBERON:0002106!2.52e-07!3;UBERON:0004854!2.52e-07!3;UBERON:0009034!2.52e-07!3;UBERON:0002095!2.52e-07!3;UBERON:0004782!2.52e-07!3;UBERON:0003281!2.52e-07!3;UBERON:0009664!2.52e-07!3;UBERON:0002296!2.52e-07!3;UBERON:0005602!2.52e-07!3;UBERON:0001179!2.52e-07!3;UBERON:0006293!2.52e-07!3;UBERON:0003408!8.69e-07!10|ontology_enrichment_uberon_v019=UBERON:0002106;8.19e-08;3|ontology_enrichment_uberon_v019_2=UBERON:0002106,8.48e-08,3;UBERON:0004854,8.48e-08,3;UBERON:0009034,8.48e-08,3;UBERON:0002095,8.48e-08,3;UBERON:0004782,8.48e-08,3;UBERON:0003281,8.48e-08,3;UBERON:0009664,8.48e-08,3;UBERON:0002296,8.48e-08,3;UBERON:0005602,8.48e-08,3;UBERON:0001179,8.48e-08,3;UBERON:0006293,8.48e-08,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.9041445485555,24.0554727088341,26.4468225213962,0,0,0.154816123316076,0,0,0,8.44392486325288,5.82893853198428,0,0,0,0,0,1.29557466407592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.3197371122926,13.1073266702912,16.011166569544,9.81479511902967,11.2110876370083,13.7940585589076,11.8988077101275,13.3567525634951,3.98449078376614,5.87237189370939,7.26319133437935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672510863961164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.106727557803444,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,1.52927441428475,0,1.66762242820452,1.23408681925858,0.648473311192717,1.62009431171434,0,0,0,0,17.6513016369433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0,0.66866030566487,0,0,0,0,0,0,0,0,0,0.398495976502139,4.42054264849836,0,0,10.2160388532688,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0,0,0,0.392125068635479,0.167821586975843,0.189753732724185,0,0,0.489698424477443,0,0,1.99052386215701,0.707660516026713,0,0,0,0,0,0,0,10.94728735294,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,1.13843818411917,0,0,0,0,2.44617335538842,0,0,0,0,0.484945082442097,0,0,0,0,0,0,0.240476460754601,0.213452994739353,0.19980960958213,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0.157566364614447,0.0824158583811665,0,0.0984274815147488,4.06431993915765,0,0,0,0,0,0,0,0,0,0.394028536495991,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0.828478110694391,2.97699613087171,0,12.910015428375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=93035 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20313 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000534623_5end | |||
|coexpression_cluster_id=C995 | |||
|description=CAGE_peak_2_at_PKHD1L1_5end | |||
|id=chr8:110535027..110535055,+ | |||
|ontology_enrichment_celltype=CL:0000945!6.04e-47!24;CL:0000826!6.04e-47!24;CL:0000236!2.77e-26!14;CL:0000542!1.14e-22!53;CL:0000051!1.14e-22!53;CL:0000838!3.47e-21!52;CL:0002087!6.77e-08!119 | |||
|ontology_enrichment_celltype_v019=CL:0000945;5.60e-103;24!CL:0000236;1.95e-56;13!CL:0000542;1.19e-29;53!CL:0002087;3.09e-08;104!CL:0000946;6.06e-07;1!CL:0000786;6.06e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,5.34e-103,24;CL:0000826,5.34e-103,24;CL:0000236,1.06e-61,14;CL:0000542,2.44e-48,53;CL:0000051,2.44e-48,53;CL:0000838,7.33e-45,52;CL:0002087,3.94e-21,115;CL:0002031,4.03e-18,120;CL:0000738,4.55e-17,136;CL:0002032,1.31e-13,161;CL:0000837,1.31e-13,161;CL:0000037,7.94e-13,168;CL:0000785,6.40e-12,2;CL:0000955,6.40e-12,2;CL:0000818,6.40e-12,2;CL:0000954,6.40e-12,2;CL:0000816,6.40e-12,2;CL:0000988,6.55e-12,177;CL:0000817,3.19e-08,3;CL:0000946,6.23e-07,1;CL:0000786,6.23e-07,1;CL:0000980,6.23e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000051;1.19e-29;53!CL:0000954;6.40e-12;2 | |||
|ontology_enrichment_disease=DOID:0060058!1.80e-10!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;2.64e-18;10!DOID:630;6.96e-07;1!DOID:0050177;6.96e-07;1!DOID:0050427;6.96e-07;1!DOID:12603;7.35e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,2.64e-18,10;DOID:630,6.96e-07,1;DOID:0050177,6.96e-07,1;DOID:0050427,6.96e-07,1;DOID:12603,7.35e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!5.29e-18!115;UBERON:0004177!4.62e-10!7;UBERON:0000178!1.43e-07!15;UBERON:0000179!1.43e-07!15;UBERON:0000463!1.43e-07!15;UBERON:0002106!2.52e-07!3;UBERON:0004854!2.52e-07!3;UBERON:0009034!2.52e-07!3;UBERON:0002095!2.52e-07!3;UBERON:0004782!2.52e-07!3;UBERON:0003281!2.52e-07!3;UBERON:0009664!2.52e-07!3;UBERON:0002296!2.52e-07!3;UBERON:0005602!2.52e-07!3;UBERON:0001179!2.52e-07!3;UBERON:0006293!2.52e-07!3;UBERON:0003408!8.69e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;8.19e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,8.48e-08,3;UBERON:0004854,8.48e-08,3;UBERON:0009034,8.48e-08,3;UBERON:0002095,8.48e-08,3;UBERON:0004782,8.48e-08,3;UBERON:0003281,8.48e-08,3;UBERON:0009664,8.48e-08,3;UBERON:0002296,8.48e-08,3;UBERON:0005602,8.48e-08,3;UBERON:0001179,8.48e-08,3;UBERON:0006293,8.48e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.9041445485555,24.0554727088341,26.4468225213962,0,0,0.154816123316076,0,0,0,8.44392486325288,5.82893853198428,0,0,0,0,0,1.29557466407592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.3197371122926,13.1073266702912,16.011166569544,9.81479511902967,11.2110876370083,13.7940585589076,11.8988077101275,13.3567525634951,3.98449078376614,5.87237189370939,7.26319133437935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672510863961164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.106727557803444,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,1.52927441428475,0,1.66762242820452,1.23408681925858,0.648473311192717,1.62009431171434,0,0,0,0,17.6513016369433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0,0.66866030566487,0,0,0,0,0,0,0,0,0,0.398495976502139,4.42054264849836,0,0,10.2160388532688,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0,0,0,0.392125068635479,0.167821586975843,0.189753732724185,0,0,0.489698424477443,0,0,1.99052386215701,0.707660516026713,0,0,0,0,0,0,0,10.94728735294,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,1.13843818411917,0,0,0,0,2.44617335538842,0,0,0,0,0.484945082442097,0,0,0,0,0,0,0.240476460754601,0.213452994739353,0.19980960958213,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0.157566364614447,0.0824158583811665,0,0.0984274815147488,4.06431993915765,0,0,0,0,0,0,0,0,0,0.394028536495991,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0.828478110694391,2.97699613087171,0,12.910015428375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344429959321631,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,2.74128883428591,0.496211178389294,0,0,0,0.336283722218824,0,0.227662191351298,0,25.0057752996041,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,1.72090943528111,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301925687133347,0.771741581079447,0,3.76253837089218,0,0,0,0,0,0,5.07513157091209,0.45120521581504,4.29746970477194,0,0,0,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,0,0.0645889098360061,0.186224142887574,0.224263725161227,0.190941474834495,0,0.217716747896961,0,3.16554649168561,0.860666464712116,0,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0.603821380773079,21.1575204920134 | |||
|short_description=p2@PKHD1L1 | |||
}} |
Revision as of 03:06, 14 September 2013
Short description: | p2@PKHD1L1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_PKHD1L1_5end |
Coexpression cluster: | C995_B_plasma_lymphoma_xeroderma_acute_Burkitt_b |
Association with transcript: | 0bp_to_ENST00000534623_5end |
EntrezGene: | PKHD1L1 |
HGNC: | 20313 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 5.34e-103 | 24 |
pro-B cell | 5.34e-103 | 24 |
B cell | 1.06e-61 | 14 |
lymphocyte | 2.44e-48 | 53 |
common lymphoid progenitor | 2.44e-48 | 53 |
lymphoid lineage restricted progenitor cell | 7.33e-45 | 52 |
nongranular leukocyte | 3.94e-21 | 115 |
hematopoietic lineage restricted progenitor cell | 4.03e-18 | 120 |
leukocyte | 4.55e-17 | 136 |
hematopoietic oligopotent progenitor cell | 1.31e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.31e-13 | 161 |
hematopoietic stem cell | 7.94e-13 | 168 |
mature B cell | 6.40e-12 | 2 |
pre-B-II cell | 6.40e-12 | 2 |
transitional stage B cell | 6.40e-12 | 2 |
small pre-B-II cell | 6.40e-12 | 2 |
immature B cell | 6.40e-12 | 2 |
hematopoietic cell | 6.55e-12 | 177 |
precursor B cell | 3.19e-08 | 3 |
antibody secreting cell | 6.23e-07 | 1 |
plasma cell | 6.23e-07 | 1 |
plasmablast | 6.23e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
spleen | 8.48e-08 | 3 |
gastrointestinal system mesentery | 8.48e-08 | 3 |
stomach region | 8.48e-08 | 3 |
mesentery | 8.48e-08 | 3 |
gastrointestinal system serosa | 8.48e-08 | 3 |
mesentery of stomach | 8.48e-08 | 3 |
gut mesentery | 8.48e-08 | 3 |
dorsal mesentery | 8.48e-08 | 3 |
dorsal mesogastrium | 8.48e-08 | 3 |
peritoneal cavity | 8.48e-08 | 3 |
spleen primordium | 8.48e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 2.64e-18 | 10 |
genetic disease | 6.96e-07 | 1 |
monogenic disease | 6.96e-07 | 1 |
xeroderma pigmentosum | 6.96e-07 | 1 |
acute leukemia | 7.35e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.