FFCP PHASE1:Hg19::chr6:137540477..137540571,-: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3459 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5439 | |||
|TSSclassifier=S | |||
|UniProt=B4DFT7,E7EPW9,P15260 | |||
|association_with_transcript=0bp_to_ENST00000367735,ENST00000418947,NM_000416,uc003qho.2,uc011edn.1_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_1_at_IFNGR1_5end | |||
|id=chr6:137540477..137540571,- | |||
|ontology_enrichment_celltype=CL:0000766!3.97e-34!76;CL:0000738!3.44e-31!140;CL:0000557!4.71e-30!71;CL:0002009!2.83e-29!65;CL:0002194!2.94e-28!63;CL:0000576!2.94e-28!63;CL:0000040!2.94e-28!63;CL:0000559!2.94e-28!63;CL:0002057!1.00e-26!42;CL:0000839!2.97e-26!70;CL:0002087!1.48e-23!119;CL:0000860!1.70e-23!45;CL:0002031!3.23e-23!124;CL:0000763!2.45e-22!112;CL:0000049!2.45e-22!112;CL:0000037!3.46e-22!172;CL:0000566!3.46e-22!172;CL:0002032!5.27e-21!165;CL:0000837!5.27e-21!165;CL:0000988!8.51e-19!182;CL:0000134!7.61e-08!358;CL:0002320!2.17e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.31e-20;33!CL:0002057;5.31e-20;33!CL:0000473;1.22e-19;39!CL:0000234;1.22e-19;39!CL:0000576;9.72e-18;48!CL:0000766;9.59e-16;69!CL:0000738;5.41e-08;136!CL:0002087;1.36e-07;104!CL:0000763;1.71e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.76e-37,72;CL:0000557,4.46e-33,67;CL:0000738,5.30e-33,136;CL:0002009,1.84e-32,61;CL:0002194,1.94e-31,59;CL:0000576,1.94e-31,59;CL:0000040,1.94e-31,59;CL:0000559,1.94e-31,59;CL:0000473,3.65e-30,48;CL:0000234,3.65e-30,48;CL:0000839,5.29e-29,66;CL:0000860,1.00e-26,42;CL:0002057,1.00e-26,42;CL:0002087,3.18e-25,115;CL:0002031,8.10e-25,120;CL:0000763,5.12e-24,108;CL:0000049,5.12e-24,108;CL:0000037,2.07e-23,168;CL:0002032,3.24e-22,161;CL:0000837,3.24e-22,161;CL:0000988,2.41e-20,177;CL:0000134,1.76e-08,354;CL:0002320,5.33e-08,361 | |||
|ontology_enrichment_development_v019=CL:0002057;2.02e-19;42!CL:0000049;2.49e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.10e-28!102;UBERON:0003061!5.10e-28!102;UBERON:0002193!5.89e-27!112;UBERON:0002371!3.40e-23!80;UBERON:0002405!2.70e-21!115;UBERON:0001474!7.74e-20!86;UBERON:0007023!1.22e-18!115;UBERON:0004765!1.45e-17!101;UBERON:0001434!1.45e-17!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.71e-30,98;UBERON:0003061,3.71e-30,98;UBERON:0002193,6.91e-29,108;UBERON:0002371,1.95e-25,76;UBERON:0002405,1.86e-24,93;UBERON:0004765,9.41e-22,90;UBERON:0001474,1.02e-21,82;UBERON:0001434,1.01e-18,100;UBERON:0007023,1.17e-18,114;UBERON:0003081,5.64e-09,203;UBERON:0002384,4.03e-07,371;UBERON:0002204,6.38e-07,167 | |||
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| |||
|short_description=p1@IFNGR1 | |||
}} |
Revision as of 18:14, 13 September 2013
Short description: | p1@IFNGR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_IFNGR1_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000367735, ENST00000418947, NM_000416, uc003qho.2, uc011edn.1_5end |
EntrezGene: | IFNGR1 |
HGNC: | 5439 |
UniProt: | B4DFT7E7EPW9P15260 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.76e-37 | 72 |
granulocyte monocyte progenitor cell | 4.46e-33 | 67 |
leukocyte | 5.30e-33 | 136 |
macrophage dendritic cell progenitor | 1.84e-32 | 61 |
monopoietic cell | 1.94e-31 | 59 |
monocyte | 1.94e-31 | 59 |
monoblast | 1.94e-31 | 59 |
promonocyte | 1.94e-31 | 59 |
defensive cell | 3.65e-30 | 48 |
phagocyte | 3.65e-30 | 48 |
myeloid lineage restricted progenitor cell | 5.29e-29 | 66 |
classical monocyte | 1.00e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.00e-26 | 42 |
nongranular leukocyte | 3.18e-25 | 115 |
hematopoietic lineage restricted progenitor cell | 8.10e-25 | 120 |
myeloid cell | 5.12e-24 | 108 |
common myeloid progenitor | 5.12e-24 | 108 |
hematopoietic stem cell | 2.07e-23 | 168 |
hematopoietic oligopotent progenitor cell | 3.24e-22 | 161 |
hematopoietic multipotent progenitor cell | 3.24e-22 | 161 |
hematopoietic cell | 2.41e-20 | 177 |
mesenchymal cell | 1.76e-08 | 354 |
connective tissue cell | 5.33e-08 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.71e-30 | 98 |
blood island | 3.71e-30 | 98 |
hemolymphoid system | 6.91e-29 | 108 |
bone marrow | 1.95e-25 | 76 |
immune system | 1.86e-24 | 93 |
skeletal element | 9.41e-22 | 90 |
bone element | 1.02e-21 | 82 |
skeletal system | 1.01e-18 | 100 |
adult organism | 1.17e-18 | 114 |
lateral plate mesoderm | 5.64e-09 | 203 |
connective tissue | 4.03e-07 | 371 |
musculoskeletal system | 6.38e-07 | 167 |
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