FFCP PHASE1:Hg19::chr6:127664736..127664773,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55862|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21489|TSSclassifier=S|UniProt=F8W851,Q5TEG3,Q5TEF6,Q5TEF9,E9PPG7,Q9NTX5,E9PEN7,E9PR31|association_with_transcript=0bp_to_ENST00000309620,ENST00000368290,ENST00000368291,ENST00000368293,ENST00000454859,ENST00000479525,NM_001002030,NM_001105544,NM_001105545,NM_018479,uc003qay.3,uc003qaz.3,uc010key.2,uc010kez.2_5end|description=CAGE_peak_3_at_ECHDC1_5end|id=chr6:127664736..127664773,-|ontology_enrichment_celltype=CL:0002194!1.70e-12!63;CL:0000576!1.70e-12!63;CL:0000040!1.70e-12!63;CL:0000559!1.70e-12!63;CL:0002009!1.29e-11!65;CL:0000839!3.89e-11!70;CL:0000557!6.12e-10!71;CL:0000766!4.23e-09!76;CL:0000860!1.86e-08!45;CL:0002057!2.23e-08!42|ontology_enrichment_celltype_v019=CL:0000473;3.21e-08;39!CL:0000234;3.21e-08;39!CL:0000576;1.05e-07;48!CL:0000860;2.38e-07;33!CL:0002057;2.38e-07;33|ontology_enrichment_celltype_v019_2=CL:0002194,1.27e-12,59;CL:0000576,1.27e-12,59;CL:0000040,1.27e-12,59;CL:0000559,1.27e-12,59;CL:0002009,8.49e-12,61;CL:0000839,3.32e-11,66;CL:0000473,9.42e-11,48;CL:0000234,9.42e-11,48;CL:0000557,4.72e-10,67;CL:0000766,3.02e-09,72;CL:0000860,1.95e-08,42;CL:0002057,1.95e-08,42|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000922!2.35e-12!612;UBERON:0002050!1.99e-10!605;UBERON:0005423!1.99e-10!605;UBERON:0000923!2.04e-10!604;UBERON:0005291!2.04e-10!604;UBERON:0006598!2.04e-10!604;UBERON:0002532!2.04e-10!604;UBERON:0000062!7.60e-10!511;UBERON:0000468!2.23e-08!659;UBERON:0002371!1.08e-07!80;UBERON:0004765!3.23e-07!101;UBERON:0001434!3.23e-07!101;UBERON:0000467!3.37e-07!625;UBERON:0000480!4.54e-07!626;UBERON:0001474!4.94e-07!86|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0000922,3.60e-11,592;UBERON:0002050,2.35e-10,564;UBERON:0000923,4.30e-10,560;UBERON:0010316,4.30e-10,560;UBERON:0005291,4.30e-10,560;UBERON:0006598,4.30e-10,560;UBERON:0010317,4.30e-10,560;UBERON:0002532,4.30e-10,560;UBERON:0011216,2.05e-09,223;UBERON:0005423,2.66e-09,581;UBERON:0002371,8.89e-08,76;UBERON:0004765,1.38e-07,90;UBERON:0001434,1.84e-07,100;UBERON:0001474,4.57e-07,82|phase1_expression=0.726713517082227,7.06531728840244,1.12763523276777,5.00366491765652,1.78784437770915,0,7.59899634504932,1.89515962028049,3.3954131665979,0.245733936501509,0.697801167972428,1.09220686065086,1.05506791291381,1.8564952944007,4.30816588446291,4.03395087871065,5.42425075221579,2.92124036154949,0.975865597581014,0.984968464614303,0.816002764977012,0,4.86601178122796,4.37998160233229,6.15158934014534,3.82067028739756,4.8439347775468,5.43104391064387,1.18009283054671,2.68680578668049,1.70297735647684,0,0.30120591877825,1.10926203050036,0.852139206383318,0.853015394924529,1.46800219667424,4.9859586767869,7.62068900386538,5.64228263861215,10.5240272892764,7.44955431843653,13.6515050846119,4.50734540216651,6.80176698639857,5.82201746850759,5.57829688573643,2.05583944010913,4.95530193432166,4.60307827715441,3.33008918487831,2.60130452877444,5.5159308917859,3.87290810150296,1.35426486594342,4.1413314699373,3.547779950752,2.69668181334102,3.06083892370903,3.53021929783703,2.55734850319616,3.95821560224059,4.18873681005427,2.55734850319616,4.35313857942876,6.80862269629368,4.9825779919646,6.02996796616184,5.21482918420201,3.9093992046921,3.63239701580021,5.52416453981347,1.26584954976354,1.90129757680748,3.18906449947565,3.56419697364239,2.69588714751588,4.6554836780867,5.46466994770072,1.71007646244749,2.38700012638908,1.46131323011707,0,1.63841583378639,0.889509253863555,0.853460445133014,2.80277190925209,0.574752439954483,2.64417949113945,2.86216126360609,1.70763890732835,1.17447437874188,0.764546456250458,1.32171328579026,2.80254281490768,1.31692042387539,1.7703879310245,0.786021525498329,2.05601498999509,0,0.32592226663359,1.4203434172042,3.89653456815823,0.445641827540694,1.17842362989935,0.664601683750863,0,0.384273959177026,0.780356085359269,0.986627427622057,0.276350017785848,1.15921234294021,1.4828656316206,0.535081656179426,0,0.679856056185397,0,0.68725489096526,1.26509846009751,0.637130828648193,0,0,1.35517607169996,1.15187950038977,2.49861453104692,0.236777252044017,1.64225599384209,1.00803371612366,2.40696176205157,3.04131248153878,7.31420598941885,3.35350429851818,0.767175371061182,2.53007406669196,1.50401373190767,1.44846518960824,0.795285947051099,0.973269740605272,1.70162670895322,1.10864698731282,2.19586964232815,3.73290365168481,0,0.370784442784429,0.649094787309367,1.74129737299267,2.92507513141503,5.00830311041218,6.29194401858141,7.4291500265913,0.993812036833525,1.72046919021225,0.694281003215189,0,2.09749718104953,2.47606237746061,0.835979866147242,1.55050055501597,2.49036383880697,1.00416183829401,0.805658634218294,0,1.46437234528902,1.83831540172934,2.43042584364528,0.803697554556718,1.57170560838319,2.13961812918312,1.53316637465883,0,1.28241220751285,1.3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241694653,2.73194629621557,3.10458295569236,2.18944576355981,5.83059232087223,1.69924332442079,1.38122824481983,0.590969204419841,1.4460082245969,5.25903722098444,2.67096502857203,1.96190514319652,3.65263488203798,0.431855182437243,1.9110067515482,3.71678029718613,5.05643557544725,0.581207126840626,4.86803162447222,5.61197955311177,4.55875561158681,3.7558064960669,23.5028285016791,5.16272830584333,2.95830001826413,2.04512171421978,1.27016115057279,6.64409918777745,4.03268301363616,1.91107787795487,2.57267493134922,2.55190607399632,5.60822454918439,5.17943069750316,1.64260490969995,2.3196288626764,5.34282092365053,1.87151570769685,2.38740930193642,0.237840181555137,4.40489719951944,1.09940516745429,2.8682940277668,3.70435958918134,6.1196676941108,0,8.58019126138669,0.707029641304878,3.92616934229891,6.23797440686881,2.9585900930838,1.35941691750254,1.87967835959707,1.54698931136585,0.699588091474503,4.46384846514144,2.82315897372553,2.96893056749923,8.76403665895821,3.21110498383179,4.15684791139209,2.0510303085114,1.76777874496378,2.61810414204226,6.34832208618481,2.97596014533401,2.31087814315709,1.29787968637137,3.40649347054713,4.47988845051152,2.02717601618299,3.16165372200143,2.40495664739004,5.60558887162554,3.0084904715085,2.19758224832894,0.535928260312357,2.48750831837634,2.27552590896169,2.98527574661373,3.33290204049236,2.84191203278427,1.80016671457988,2.4669009767735,14.3842577708653,4.04234377916439,2.8303177226605,2.39563310759697,2.28996980249598,5.02055437748735,2.66128285236811,2.52350132694021,0.853818767021724,1.9307228228694,5.12003652007545,4.69281884806909,3.17827754875453,2.03448089157869,4.66029741929859,3.01910690386539,1.60284246151616|short_description=p3@ECHDC1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=55862 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21489 | |||
|TSSclassifier=S | |||
|UniProt=F8W851,Q5TEG3,Q5TEF6,Q5TEF9,E9PPG7,Q9NTX5,E9PEN7,E9PR31 | |||
|association_with_transcript=0bp_to_ENST00000309620,ENST00000368290,ENST00000368291,ENST00000368293,ENST00000454859,ENST00000479525,NM_001002030,NM_001105544,NM_001105545,NM_018479,uc003qay.3,uc003qaz.3,uc010key.2,uc010kez.2_5end | |||
|description=CAGE_peak_3_at_ECHDC1_5end | |||
|id=chr6:127664736..127664773,- | |||
|ontology_enrichment_celltype=CL:0002194!1.70e-12!63;CL:0000576!1.70e-12!63;CL:0000040!1.70e-12!63;CL:0000559!1.70e-12!63;CL:0002009!1.29e-11!65;CL:0000839!3.89e-11!70;CL:0000557!6.12e-10!71;CL:0000766!4.23e-09!76;CL:0000860!1.86e-08!45;CL:0002057!2.23e-08!42 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.21e-08;39!CL:0000234;3.21e-08;39!CL:0000576;1.05e-07;48!CL:0000860;2.38e-07;33!CL:0002057;2.38e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,1.27e-12,59;CL:0000576,1.27e-12,59;CL:0000040,1.27e-12,59;CL:0000559,1.27e-12,59;CL:0002009,8.49e-12,61;CL:0000839,3.32e-11,66;CL:0000473,9.42e-11,48;CL:0000234,9.42e-11,48;CL:0000557,4.72e-10,67;CL:0000766,3.02e-09,72;CL:0000860,1.95e-08,42;CL:0002057,1.95e-08,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000922!2.35e-12!612;UBERON:0002050!1.99e-10!605;UBERON:0005423!1.99e-10!605;UBERON:0000923!2.04e-10!604;UBERON:0005291!2.04e-10!604;UBERON:0006598!2.04e-10!604;UBERON:0002532!2.04e-10!604;UBERON:0000062!7.60e-10!511;UBERON:0000468!2.23e-08!659;UBERON:0002371!1.08e-07!80;UBERON:0004765!3.23e-07!101;UBERON:0001434!3.23e-07!101;UBERON:0000467!3.37e-07!625;UBERON:0000480!4.54e-07!626;UBERON:0001474!4.94e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000922,3.60e-11,592;UBERON:0002050,2.35e-10,564;UBERON:0000923,4.30e-10,560;UBERON:0010316,4.30e-10,560;UBERON:0005291,4.30e-10,560;UBERON:0006598,4.30e-10,560;UBERON:0010317,4.30e-10,560;UBERON:0002532,4.30e-10,560;UBERON:0011216,2.05e-09,223;UBERON:0005423,2.66e-09,581;UBERON:0002371,8.89e-08,76;UBERON:0004765,1.38e-07,90;UBERON:0001434,1.84e-07,100;UBERON:0001474,4.57e-07,82 | |||
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| |||
|short_description=p3@ECHDC1 | |||
}} |
Revision as of 17:51, 13 September 2013
Short description: | p3@ECHDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_ECHDC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000309620, ENST00000368290, ENST00000368291, ENST00000368293, ENST00000454859, ENST00000479525, NM_001002030, NM_001105544, NM_001105545, NM_018479, uc003qay.3, uc003qaz.3, uc010key.2, uc010kez.2_5end |
EntrezGene: | ECHDC1 |
HGNC: | 21489 |
UniProt: | F8W851Q5TEG3Q5TEF6Q5TEF9E9PPG7Q9NTX5E9PEN7E9PR31 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 1.27e-12 | 59 |
monocyte | 1.27e-12 | 59 |
monoblast | 1.27e-12 | 59 |
promonocyte | 1.27e-12 | 59 |
macrophage dendritic cell progenitor | 8.49e-12 | 61 |
myeloid lineage restricted progenitor cell | 3.32e-11 | 66 |
defensive cell | 9.42e-11 | 48 |
phagocyte | 9.42e-11 | 48 |
granulocyte monocyte progenitor cell | 4.72e-10 | 67 |
myeloid leukocyte | 3.02e-09 | 72 |
classical monocyte | 1.95e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.95e-08 | 42 |
Ontology term | p-value | n |
---|---|---|
embryo | 3.60e-11 | 592 |
embryonic structure | 2.35e-10 | 564 |
germ layer | 4.30e-10 | 560 |
germ layer / neural crest | 4.30e-10 | 560 |
embryonic tissue | 4.30e-10 | 560 |
presumptive structure | 4.30e-10 | 560 |
germ layer / neural crest derived structure | 4.30e-10 | 560 |
epiblast (generic) | 4.30e-10 | 560 |
organ system subdivision | 2.05e-09 | 223 |
developing anatomical structure | 2.66e-09 | 581 |
bone marrow | 8.89e-08 | 76 |
skeletal element | 1.38e-07 | 90 |
skeletal system | 1.84e-07 | 100 |
bone element | 4.57e-07 | 82 |
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