FFCP PHASE1:Hg19::chr6:51952328..51952343,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5314|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9016|TSSclassifier=S|UniProt=|association_with_transcript=64bp_to_ENST00000340994_5end|coexpression_cluster_id=C148|description=CAGE_peak_3_at_PKHD1_5end|id=chr6:51952328..51952343,-|ontology_enrichment_celltype=CL:1000507!1.16e-08!12;CL:1000494!1.16e-08!12;CL:0000313!3.80e-08!1;CL:0002563!1.81e-07!4|ontology_enrichment_celltype_v019=CL:0000313;5.72e-18;1!CL:0000159;1.17e-09;2|ontology_enrichment_celltype_v019_2=CL:0000313,6.23e-18,1;CL:0000159,1.22e-09,2|ontology_enrichment_development_v019=UBERON:0006242;1.33e-17;1!UBERON:0007297;9.87e-10;2!UBERON:0003918;1.02e-07;10!UBERON:0007687;1.02e-07;10|ontology_enrichment_disease=DOID:4468!4.18e-14!2;DOID:2152!3.80e-08!1|ontology_enrichment_disease_v019=DOID:2152;5.72e-18;1!DOID:4468;1.38e-09;2|ontology_enrichment_disease_v019_2=DOID:2152,6.23e-18,1;DOID:4468,1.44e-09,2|ontology_enrichment_uberon=UBERON:0002294!6.55e-15!7;UBERON:0001173!6.55e-15!7;UBERON:0004912!6.55e-15!7;UBERON:0000058!9.48e-15!26;UBERON:0002113!4.25e-11!27;UBERON:0003918!4.25e-11!27;UBERON:0005095!4.25e-11!27;UBERON:0007687!4.25e-11!27;UBERON:0005172!4.41e-10!55;UBERON:0005173!4.41e-10!55;UBERON:0006947!5.49e-10!3;UBERON:0004054!5.49e-10!3;UBERON:0002110!1.44e-09!3;UBERON:0006242!1.44e-09!3;UBERON:0006555!2.55e-09!17;UBERON:0005103!2.55e-09!17;UBERON:0000083!2.55e-09!17;UBERON:0009201!2.55e-09!17;UBERON:0004819!2.55e-09!17;UBERON:0006553!2.55e-09!17;UBERON:0003074!2.55e-09!17;UBERON:0003060!2.55e-09!17;UBERON:0000489!3.14e-09!32;UBERON:0002417!6.35e-09!61;UBERON:0000916!6.35e-09!61;UBERON:0000080!8.63e-09!18;UBERON:0002120!8.63e-09!18;UBERON:0004875!8.63e-09!18;UBERON:0005721!8.63e-09!18;UBERON:0005754!8.63e-09!18;UBERON:0007297!8.63e-09!18;UBERON:0009773!1.16e-08!12;UBERON:0001231!1.16e-08!12;UBERON:0004810!1.16e-08!12;UBERON:0003886!1.41e-08!63;UBERON:0006554!2.28e-08!44;UBERON:0001301!3.32e-08!1;UBERON:0001008!3.71e-08!45;UBERON:0004911!3.80e-08!1;UBERON:0001000!4.99e-08!1;UBERON:0005352!4.99e-08!1;UBERON:0004876!6.88e-08!20;UBERON:0005904!1.08e-07!4;UBERON:0002553!1.49e-07!70;UBERON:0003887!1.68e-07!21;UBERON:0001242!1.81e-07!4;UBERON:0001262!1.81e-07!4;UBERON:0004786!1.81e-07!4;UBERON:0004808!1.81e-07!4;UBERON:0001277!1.81e-07!4;UBERON:0006834!1.87e-07!1;UBERON:0002394!2.50e-07!4;UBERON:0003928!2.50e-07!4;UBERON:0000466!2.83e-07!126|ontology_enrichment_uberon_v019=UBERON:0006947;5.76e-23;3!UBERON:0004054;5.76e-23;3!UBERON:0001301;4.08e-18;1!UBERON:0004911;5.72e-18;1!UBERON:0001000;1.33e-17;1!UBERON:0005352;1.33e-17;1!UBERON:0005904;1.71e-17;4!UBERON:0004909;1.17e-09;2!UBERON:0000058;1.47e-07;10!UBERON:0003135;5.98e-07;11!UBERON:0002110;9.91e-07;3!UBERON:0002114;9.91e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0006947,5.76e-23,3;UBERON:0004054,5.76e-23,3;UBERON:0001301,4.44e-18,1;UBERON:0004911,6.23e-18,1;UBERON:0001000,1.22e-17,1;UBERON:0005352,1.22e-17,1;UBERON:0005904,1.71e-17,4;UBERON:0004909,1.22e-09,2;UBERON:0003135,5.98e-07,11|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.32230949142452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0.451199612907412,0.15403067420883,0,0,0.211103257785751,0,0,0,0,0,0,0.764628819135115,0,0,0,0,0,0,0,1.75169719801128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.898683511473268,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0.421996129056054,2.28525931422807,0.565412285735763,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57833761139756,2.41981432097328,0,0,0,0,0,0,0,0,0,0,0,0,0,4.01871336956669,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,1.49417096317547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.11698785181741,12.2743736235896,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0.471612915298998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.90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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5314 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9016 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=64bp_to_ENST00000340994_5end | |||
|coexpression_cluster_id=C148 | |||
|description=CAGE_peak_3_at_PKHD1_5end | |||
|id=chr6:51952328..51952343,- | |||
|ontology_enrichment_celltype=CL:1000507!1.16e-08!12;CL:1000494!1.16e-08!12;CL:0000313!3.80e-08!1;CL:0002563!1.81e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000313;5.72e-18;1!CL:0000159;1.17e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000313,6.23e-18,1;CL:0000159,1.22e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0006242;1.33e-17;1!UBERON:0007297;9.87e-10;2!UBERON:0003918;1.02e-07;10!UBERON:0007687;1.02e-07;10 | |||
|ontology_enrichment_disease=DOID:4468!4.18e-14!2;DOID:2152!3.80e-08!1 | |||
|ontology_enrichment_disease_v019=DOID:2152;5.72e-18;1!DOID:4468;1.38e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,6.23e-18,1;DOID:4468,1.44e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0002294!6.55e-15!7;UBERON:0001173!6.55e-15!7;UBERON:0004912!6.55e-15!7;UBERON:0000058!9.48e-15!26;UBERON:0002113!4.25e-11!27;UBERON:0003918!4.25e-11!27;UBERON:0005095!4.25e-11!27;UBERON:0007687!4.25e-11!27;UBERON:0005172!4.41e-10!55;UBERON:0005173!4.41e-10!55;UBERON:0006947!5.49e-10!3;UBERON:0004054!5.49e-10!3;UBERON:0002110!1.44e-09!3;UBERON:0006242!1.44e-09!3;UBERON:0006555!2.55e-09!17;UBERON:0005103!2.55e-09!17;UBERON:0000083!2.55e-09!17;UBERON:0009201!2.55e-09!17;UBERON:0004819!2.55e-09!17;UBERON:0006553!2.55e-09!17;UBERON:0003074!2.55e-09!17;UBERON:0003060!2.55e-09!17;UBERON:0000489!3.14e-09!32;UBERON:0002417!6.35e-09!61;UBERON:0000916!6.35e-09!61;UBERON:0000080!8.63e-09!18;UBERON:0002120!8.63e-09!18;UBERON:0004875!8.63e-09!18;UBERON:0005721!8.63e-09!18;UBERON:0005754!8.63e-09!18;UBERON:0007297!8.63e-09!18;UBERON:0009773!1.16e-08!12;UBERON:0001231!1.16e-08!12;UBERON:0004810!1.16e-08!12;UBERON:0003886!1.41e-08!63;UBERON:0006554!2.28e-08!44;UBERON:0001301!3.32e-08!1;UBERON:0001008!3.71e-08!45;UBERON:0004911!3.80e-08!1;UBERON:0001000!4.99e-08!1;UBERON:0005352!4.99e-08!1;UBERON:0004876!6.88e-08!20;UBERON:0005904!1.08e-07!4;UBERON:0002553!1.49e-07!70;UBERON:0003887!1.68e-07!21;UBERON:0001242!1.81e-07!4;UBERON:0001262!1.81e-07!4;UBERON:0004786!1.81e-07!4;UBERON:0004808!1.81e-07!4;UBERON:0001277!1.81e-07!4;UBERON:0006834!1.87e-07!1;UBERON:0002394!2.50e-07!4;UBERON:0003928!2.50e-07!4;UBERON:0000466!2.83e-07!126 | |||
|ontology_enrichment_uberon_v019=UBERON:0006947;5.76e-23;3!UBERON:0004054;5.76e-23;3!UBERON:0001301;4.08e-18;1!UBERON:0004911;5.72e-18;1!UBERON:0001000;1.33e-17;1!UBERON:0005352;1.33e-17;1!UBERON:0005904;1.71e-17;4!UBERON:0004909;1.17e-09;2!UBERON:0000058;1.47e-07;10!UBERON:0003135;5.98e-07;11!UBERON:0002110;9.91e-07;3!UBERON:0002114;9.91e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006947,5.76e-23,3;UBERON:0004054,5.76e-23,3;UBERON:0001301,4.44e-18,1;UBERON:0004911,6.23e-18,1;UBERON:0001000,1.22e-17,1;UBERON:0005352,1.22e-17,1;UBERON:0005904,1.71e-17,4;UBERON:0004909,1.22e-09,2;UBERON:0003135,5.98e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.32230949142452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0.451199612907412,0.15403067420883,0,0,0.211103257785751,0,0,0,0,0,0,0.764628819135115,0,0,0,0,0,0,0,1.75169719801128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.898683511473268,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0.421996129056054,2.28525931422807,0.565412285735763,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57833761139756,2.41981432097328,0,0,0,0,0,0,0,0,0,0,0,0,0,4.01871336956669,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,1.49417096317547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.11698785181741,12.2743736235896,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0.471612915298998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.90757005616546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.69122924932715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p3@PKHD1 | |||
}} |
Revision as of 21:22, 13 September 2013
Short description: | p3@PKHD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_PKHD1_5end |
Coexpression cluster: | C148_kidney_small_epididymis_pancreas_serous_duodenum_temporal |
Association with transcript: | 64bp_to_ENST00000340994_5end |
EntrezGene: | PKHD1 |
HGNC: | 9016 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
serous secreting cell | 6.23e-18 | 1 |
seromucus secreting cell | 1.22e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
male genital duct | 5.76e-23 | 3 |
internal male genitalia | 5.76e-23 | 3 |
epididymis | 4.44e-18 | 1 |
epithelium of female gonad | 6.23e-18 | 1 |
vas deferens | 1.22e-17 | 1 |
spermatic cord | 1.22e-17 | 1 |
duct of male reproductive system | 1.71e-17 | 4 |
epithelium of gonad | 1.22e-09 | 2 |
male reproductive organ | 5.98e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 6.23e-18 | 1 |
clear cell adenocarcinoma | 1.44e-09 | 2 |
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