FFCP PHASE1:Hg19::chr6:32784768..32784839,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3112|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4937|TSSclassifier=S|UniProt=P13765,Q5QNS2|association_with_transcript=0bp_to_ENST00000438763,NM_002120,uc003oca.2,uc011dqg.1_5end|coexpression_cluster_id=C47|description=CAGE_peak_1_at_HLA-DOB_5end|id=chr6:32784768..32784839,-|ontology_enrichment_celltype=CL:0000945!1.62e-21!24;CL:0000826!1.62e-21!24;CL:0000542!5.07e-13!53;CL:0000051!5.07e-13!53;CL:0000236!6.06e-13!14;CL:0000738!1.64e-12!140;CL:0000838!2.25e-12!52;CL:0002087!5.26e-09!119;CL:0002031!5.47e-08!124;CL:0000037!7.10e-07!172;CL:0000566!7.10e-07!172|ontology_enrichment_celltype_v019=CL:0000945;2.66e-38;24!CL:0000236;4.76e-21;13!CL:0000542;3.62e-11;53!CL:0000453;2.00e-10;5!CL:0000244;9.42e-07;4!CL:0000731;9.42e-07;4|ontology_enrichment_celltype_v019_2=CL:0000945,2.73e-38,24;CL:0000826,2.73e-38,24;CL:0000236,1.06e-22,14;CL:0000542,2.98e-17,53;CL:0000051,2.98e-17,53;CL:0000838,3.44e-16,52;CL:0000453,2.03e-10,5;CL:0000738,4.15e-10,136;CL:0002087,2.35e-07,115;CL:0000244,7.53e-07,4;CL:0000731,7.53e-07,4|ontology_enrichment_development_v019=CL:0000051;3.62e-11;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060058;3.21e-08;10|ontology_enrichment_disease_v019_2=DOID:0060058,3.11e-08,10|ontology_enrichment_uberon=UBERON:0007023!3.65e-17!115;UBERON:0000178!3.79e-11!15;UBERON:0000179!3.79e-11!15;UBERON:0000463!3.79e-11!15|ontology_enrichment_uberon_v019=UBERON:0000178;6.76e-16;15!UBERON:0000179;6.76e-16;15!UBERON:0000463;6.76e-16;15!UBERON:0002390;4.50e-13;32!UBERON:0004177;1.85e-09;5!UBERON:0005057;1.85e-09;5!UBERON:0002193;6.69e-09;42|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.04e-16,15;UBERON:0000179,7.04e-16,15;UBERON:0000463,7.04e-16,15;UBERON:0007023,1.72e-09,114;UBERON:0004119,4.30e-07,160;UBERON:0000925,4.30e-07,160;UBERON:0006595,4.30e-07,160|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0.436882744260345,0.263766978228454,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,6.49513948857586,5.17233713534658,5.03749000407547,0.393364276848904,1.15148819429164,0.619264493264304,0.919421224478927,3.31326510656075,1.10926203050036,60.4244164526353,20.3302002457013,0,0,0.200544447470142,0,0.447830948479849,2.26725566213286,0,0,0.377875943688809,0,0.232429036905685,0.411167888021826,0.309706370895104,0,0,1.18241114944293,0.344745680736619,0,0,0.188242339542605,0,0,0,0.320929027076094,0,0,0.398927315243264,0,0.580418477257168,0.56738522469114,0.622822248995575,0.251248665256743,0,0,0,1.10483290796269,0,0,0,0.209658645508376,0,0,0,0,0,0,204.155643575134,257.777424515726,285.532470490201,267.133119326634,300.296990277009,239.671767461019,269.706308096224,270.951266288043,165.64097401085,115.685726306075,86.776022784427,1.32171328579026,2.80254281490768,0.263384084775077,0,0,0.411202997999018,0,0.32592226663359,0.473447805734733,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0.267540828089713,0,0,0,0,0.253019692019503,0,0,0,0.150575119077773,0.383959833463255,1.24930726552346,0,0,0,0.267440195783507,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,1.5062593682237,2.18577172975525,1.48313777113772,0,0.174129737299267,0,0.715471872916026,1.14398982156026,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,2.61656431285521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.83152132908242,1.09098448236334,1.43402297694502,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77236972004421,0,0,0,6.14601598288303,1.1240175325762,0.904760751704678,2.12953423864618,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0.148631162288728,1.87467667973554,3.35964256397719,3.82792762554443,1.43293636324557,1.45316969256981,5.75074018747817,0,0.088048434013226,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.513372145118994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.2707210449155,6.47142602455851,3.09509917629989,0.909382714338778,0,2.72151263996712,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,6.41620704970512,0.368323955743585,0,0,0,0.451199612907412,0.15403067420883,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0.574265537996172,1.95018073810956,0,0,0,0,0,0,0,0,0,0.991709492165869,0.960950336825531,1.40373983744043,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15466535270614,2.68120910214315,0,0.376575203107117,1.29151611801369,8.42357378338128,1.7737206141467,3.67557440331135,11.1638474031077,12.234195314278,21.076945925444,24.2996410966945,31.674895027637,12.9694662238543,12.9607544937148,7.9312517629427,0,0,1.22520107990516,5.75989842889728,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,2.78608460693696,0,0.23874448473769,1.18785872333055,0,0,0,0,0.16480387422676,0,1.59398390600856,37.0220446811738,0,0,7.75434274404738,0,0.0898683511473268,0,0,2.663371952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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3112 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4937 | |||
|TSSclassifier=S | |||
|UniProt=P13765,Q5QNS2 | |||
|association_with_transcript=0bp_to_ENST00000438763,NM_002120,uc003oca.2,uc011dqg.1_5end | |||
|coexpression_cluster_id=C47 | |||
|description=CAGE_peak_1_at_HLA-DOB_5end | |||
|id=chr6:32784768..32784839,- | |||
|ontology_enrichment_celltype=CL:0000945!1.62e-21!24;CL:0000826!1.62e-21!24;CL:0000542!5.07e-13!53;CL:0000051!5.07e-13!53;CL:0000236!6.06e-13!14;CL:0000738!1.64e-12!140;CL:0000838!2.25e-12!52;CL:0002087!5.26e-09!119;CL:0002031!5.47e-08!124;CL:0000037!7.10e-07!172;CL:0000566!7.10e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000945;2.66e-38;24!CL:0000236;4.76e-21;13!CL:0000542;3.62e-11;53!CL:0000453;2.00e-10;5!CL:0000244;9.42e-07;4!CL:0000731;9.42e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,2.73e-38,24;CL:0000826,2.73e-38,24;CL:0000236,1.06e-22,14;CL:0000542,2.98e-17,53;CL:0000051,2.98e-17,53;CL:0000838,3.44e-16,52;CL:0000453,2.03e-10,5;CL:0000738,4.15e-10,136;CL:0002087,2.35e-07,115;CL:0000244,7.53e-07,4;CL:0000731,7.53e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000051;3.62e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060058;3.21e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,3.11e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.65e-17!115;UBERON:0000178!3.79e-11!15;UBERON:0000179!3.79e-11!15;UBERON:0000463!3.79e-11!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.76e-16;15!UBERON:0000179;6.76e-16;15!UBERON:0000463;6.76e-16;15!UBERON:0002390;4.50e-13;32!UBERON:0004177;1.85e-09;5!UBERON:0005057;1.85e-09;5!UBERON:0002193;6.69e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.04e-16,15;UBERON:0000179,7.04e-16,15;UBERON:0000463,7.04e-16,15;UBERON:0007023,1.72e-09,114;UBERON:0004119,4.30e-07,160;UBERON:0000925,4.30e-07,160;UBERON:0006595,4.30e-07,160 | |||
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| |||
|short_description=p1@HLA-DOB | |||
}} |
Revision as of 20:26, 13 September 2013
Short description: | p1@HLA-DOB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_HLA-DOB_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | 0bp_to_ENST00000438763, NM_002120, uc003oca.2, uc011dqg.1_5end |
EntrezGene: | HLA-DOB |
HGNC: | 4937 |
UniProt: | P13765Q5QNS2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 2.73e-38 | 24 |
pro-B cell | 2.73e-38 | 24 |
B cell | 1.06e-22 | 14 |
lymphocyte | 2.98e-17 | 53 |
common lymphoid progenitor | 2.98e-17 | 53 |
lymphoid lineage restricted progenitor cell | 3.44e-16 | 52 |
Langerhans cell | 2.03e-10 | 5 |
leukocyte | 4.15e-10 | 136 |
nongranular leukocyte | 2.35e-07 | 115 |
transitional epithelial cell | 7.53e-07 | 4 |
urothelial cell | 7.53e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
blood | 7.04e-16 | 15 |
haemolymphatic fluid | 7.04e-16 | 15 |
organism substance | 7.04e-16 | 15 |
adult organism | 1.72e-09 | 114 |
endoderm-derived structure | 4.30e-07 | 160 |
endoderm | 4.30e-07 | 160 |
presumptive endoderm | 4.30e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 3.11e-08 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.