FFCP PHASE1:Hg19::chr6:31553937..31553943,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7940|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14189|TSSclassifier=S|UniProt=A8MT08,O00453,Q5STA6|association_with_transcript=-12bp_to_ENST00000376100,ENST00000376111,ENST00000438075,NM_205838,NM_205839,NR_029461,NR_029462_5end|description=CAGE_peak_12_at_LST1_5end|id=chr6:31553937..31553943,+|ontology_enrichment_celltype=CL:0000763!1.51e-60!112;CL:0000049!1.51e-60!112;CL:0000037!1.59e-49!172;CL:0000566!1.59e-49!172;CL:0002032!1.32e-47!165;CL:0000837!1.32e-47!165;CL:0000988!1.49e-45!182;CL:0002009!2.66e-44!65;CL:0000839!3.06e-44!70;CL:0002194!8.01e-44!63;CL:0000576!8.01e-44!63;CL:0000040!8.01e-44!63;CL:0000559!8.01e-44!63;CL:0000766!3.08e-42!76;CL:0000557!2.28e-41!71;CL:0002057!3.18e-41!42;CL:0000860!9.81e-38!45;CL:0000738!1.52e-31!140;CL:0002031!2.25e-31!124;CL:0002087!4.84e-29!119;CL:0002393!1.11e-13!9;CL:0002397!1.11e-13!9;CL:0000134!1.89e-12!358;CL:0002320!8.01e-12!365;CL:0000219!1.21e-09!390;CL:0000875!2.52e-07!3;CL:0002396!2.52e-07!3;CL:0000048!3.99e-07!430;CL:0000723!8.89e-07!436|ontology_enrichment_celltype_v019=CL:0000875;2.74e-23;3!CL:0002396;2.74e-23;3!CL:0000576;1.89e-12;48!CL:0002393;1.67e-11;6!CL:0002397;1.67e-11;6!CL:0000763;9.92e-11;100!CL:0000784;1.14e-10;3!CL:0000766;2.23e-10;69|ontology_enrichment_celltype_v019_2=CL:0002393,1.50e-29,9;CL:0002397,1.50e-29,9;CL:0000763,2.05e-26,108;CL:0000049,2.05e-26,108;CL:0000875,1.07e-23,3;CL:0002396,1.07e-23,3;CL:0000037,2.69e-21,168;CL:0000766,4.83e-20,72;CL:0000988,5.18e-20,177;CL:0002194,1.29e-18,59;CL:0000576,1.29e-18,59;CL:0000040,1.29e-18,59;CL:0000559,1.29e-18,59;CL:0002032,2.01e-18,161;CL:0000837,2.01e-18,161;CL:0002009,6.12e-18,61;CL:0000839,2.01e-16,66;CL:0000557,3.79e-16,67;CL:0000738,4.22e-14,136;CL:0000473,8.35e-14,48;CL:0000234,8.35e-14,48;CL:0000860,6.47e-13,42;CL:0002057,6.47e-13,42;CL:0000784,2.05e-10,3;CL:0002087,5.26e-10,115;CL:0002031,1.74e-09,120;CL:0000134,6.48e-08,354;CL:0002320,1.12e-07,361;CL:0000219,7.71e-07,386|ontology_enrichment_development_v019=CL:0000049;4.30e-13;108!CL:0002057;4.67e-10;42|ontology_enrichment_disease=DOID:8692!1.06e-21!31;DOID:1240!1.51e-19!39;DOID:2531!1.32e-14!51;DOID:0060083!1.32e-14!51|ontology_enrichment_disease_v019=DOID:8692;1.63e-17;31!DOID:1240;2.48e-15;39!DOID:225;1.27e-08;1!DOID:2531;1.47e-07;51!DOID:0060083;1.47e-07;51|ontology_enrichment_disease_v019_2=DOID:8692,1.77e-18,31;DOID:1240,8.04e-18,39;DOID:2531,3.08e-13,51;DOID:0060083,3.08e-13,51;DOID:225,9.74e-09,1|ontology_enrichment_uberon=UBERON:0002390!9.54e-40!102;UBERON:0003061!9.54e-40!102;UBERON:0002371!3.76e-35!80;UBERON:0002193!1.01e-34!112;UBERON:0001474!9.83e-32!86;UBERON:0002405!4.86e-26!115;UBERON:0004765!5.41e-25!101;UBERON:0001434!5.41e-25!101;UBERON:0003081!7.85e-12!216;UBERON:0002384!5.67e-11!375;UBERON:0002204!9.40e-11!167|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.45e-14,98;UBERON:0003061,4.45e-14,98;UBERON:0002371,5.55e-14,76;UBERON:0001474,8.46e-13,82;UBERON:0002193,1.58e-12,108;UBERON:0004765,1.83e-11,90;UBERON:0002405,5.05e-11,93;UBERON:0001434,4.28e-10,100;UBERON:0002384,2.36e-07,371|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,0,0.928896739896456,0,0,0,0.154934401160603,0,0,0,0.401088894940283,0.651032612147555,0.223915474239924,0,0,0.290796477559129,0.377875943688809,0,0.697287110717054,0.822335776043652,0,0.863077176966451,0.512321413058201,0.47296445977717,0,0,0,0.752969358170419,0.818718450173537,0.449446968890169,0.612167784741805,0.962787081228281,0,0.989553900560148,1.19678194572979,0.852449501065388,0.870627715885752,0,0,0.75374599577023,1.0429658368404,1.95469960234605,0.605399502633369,0.736555271975129,0.316462387440884,1.90129757680748,1.27562579979026,1.46761051855863,0.786300418025466,0.450530678524519,0.64290234678832,2.56511469367124,1.79025009479181,2.92262646023414,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0.393010762749165,0,0.167186495390678,0,0,0,0.222820913770347,0,0.221533894583621,0,0.25618263945135,0.130059347559878,0.493313713811028,0.276350017785848,0.869409257205157,0,0,0,0.113309342697566,0,0.34362744548263,0,0,0,0,0.150575119077773,0.383959833463255,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26591592103773,0.715471872916026,1.14398982156026,1.11437250398869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,0.234004265139238,0.594524649154913,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.00902836572851,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0.522870902049801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7940 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14189 | |||
|TSSclassifier=S | |||
|UniProt=A8MT08,O00453,Q5STA6 | |||
|association_with_transcript=-12bp_to_ENST00000376100,ENST00000376111,ENST00000438075,NM_205838,NM_205839,NR_029461,NR_029462_5end | |||
|description=CAGE_peak_12_at_LST1_5end | |||
|id=chr6:31553937..31553943,+ | |||
|ontology_enrichment_celltype=CL:0000763!1.51e-60!112;CL:0000049!1.51e-60!112;CL:0000037!1.59e-49!172;CL:0000566!1.59e-49!172;CL:0002032!1.32e-47!165;CL:0000837!1.32e-47!165;CL:0000988!1.49e-45!182;CL:0002009!2.66e-44!65;CL:0000839!3.06e-44!70;CL:0002194!8.01e-44!63;CL:0000576!8.01e-44!63;CL:0000040!8.01e-44!63;CL:0000559!8.01e-44!63;CL:0000766!3.08e-42!76;CL:0000557!2.28e-41!71;CL:0002057!3.18e-41!42;CL:0000860!9.81e-38!45;CL:0000738!1.52e-31!140;CL:0002031!2.25e-31!124;CL:0002087!4.84e-29!119;CL:0002393!1.11e-13!9;CL:0002397!1.11e-13!9;CL:0000134!1.89e-12!358;CL:0002320!8.01e-12!365;CL:0000219!1.21e-09!390;CL:0000875!2.52e-07!3;CL:0002396!2.52e-07!3;CL:0000048!3.99e-07!430;CL:0000723!8.89e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000875;2.74e-23;3!CL:0002396;2.74e-23;3!CL:0000576;1.89e-12;48!CL:0002393;1.67e-11;6!CL:0002397;1.67e-11;6!CL:0000763;9.92e-11;100!CL:0000784;1.14e-10;3!CL:0000766;2.23e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002393,1.50e-29,9;CL:0002397,1.50e-29,9;CL:0000763,2.05e-26,108;CL:0000049,2.05e-26,108;CL:0000875,1.07e-23,3;CL:0002396,1.07e-23,3;CL:0000037,2.69e-21,168;CL:0000766,4.83e-20,72;CL:0000988,5.18e-20,177;CL:0002194,1.29e-18,59;CL:0000576,1.29e-18,59;CL:0000040,1.29e-18,59;CL:0000559,1.29e-18,59;CL:0002032,2.01e-18,161;CL:0000837,2.01e-18,161;CL:0002009,6.12e-18,61;CL:0000839,2.01e-16,66;CL:0000557,3.79e-16,67;CL:0000738,4.22e-14,136;CL:0000473,8.35e-14,48;CL:0000234,8.35e-14,48;CL:0000860,6.47e-13,42;CL:0002057,6.47e-13,42;CL:0000784,2.05e-10,3;CL:0002087,5.26e-10,115;CL:0002031,1.74e-09,120;CL:0000134,6.48e-08,354;CL:0002320,1.12e-07,361;CL:0000219,7.71e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000049;4.30e-13;108!CL:0002057;4.67e-10;42 | |||
|ontology_enrichment_disease=DOID:8692!1.06e-21!31;DOID:1240!1.51e-19!39;DOID:2531!1.32e-14!51;DOID:0060083!1.32e-14!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.63e-17;31!DOID:1240;2.48e-15;39!DOID:225;1.27e-08;1!DOID:2531;1.47e-07;51!DOID:0060083;1.47e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,1.77e-18,31;DOID:1240,8.04e-18,39;DOID:2531,3.08e-13,51;DOID:0060083,3.08e-13,51;DOID:225,9.74e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!9.54e-40!102;UBERON:0003061!9.54e-40!102;UBERON:0002371!3.76e-35!80;UBERON:0002193!1.01e-34!112;UBERON:0001474!9.83e-32!86;UBERON:0002405!4.86e-26!115;UBERON:0004765!5.41e-25!101;UBERON:0001434!5.41e-25!101;UBERON:0003081!7.85e-12!216;UBERON:0002384!5.67e-11!375;UBERON:0002204!9.40e-11!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.45e-14,98;UBERON:0003061,4.45e-14,98;UBERON:0002371,5.55e-14,76;UBERON:0001474,8.46e-13,82;UBERON:0002193,1.58e-12,108;UBERON:0004765,1.83e-11,90;UBERON:0002405,5.05e-11,93;UBERON:0001434,4.28e-10,100;UBERON:0002384,2.36e-07,371 | |||
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|short_description=p12@LST1 | |||
}} |
Revision as of 20:13, 13 September 2013
Short description: | p12@LST1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_LST1_5end |
Coexpression cluster: | NA |
Association with transcript: | -12bp_to_ENST00000376100, ENST00000376111, ENST00000438075, NM_205838, NM_205839, NR_029461, NR_029462_5end |
EntrezGene: | LST1 |
HGNC: | 14189 |
UniProt: | A8MT08O00453Q5STA6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.45e-14 | 98 |
blood island | 4.45e-14 | 98 |
bone marrow | 5.55e-14 | 76 |
bone element | 8.46e-13 | 82 |
hemolymphoid system | 1.58e-12 | 108 |
skeletal element | 1.83e-11 | 90 |
immune system | 5.05e-11 | 93 |
skeletal system | 4.28e-10 | 100 |
connective tissue | 2.36e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 1.77e-18 | 31 |
leukemia | 8.04e-18 | 39 |
hematologic cancer | 3.08e-13 | 51 |
immune system cancer | 3.08e-13 | 51 |
syndrome | 9.74e-09 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.