FFCP PHASE1:Hg19::chr5:95157957..95157982,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2745|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4330|TSSclassifier=S|UniProt=|association_with_transcript=12bp_to_ENST00000507605_5end|description=CAGE_peak_4_at_GLRX_5end|id=chr5:95157957..95157982,-|ontology_enrichment_celltype=CL:0000766!4.34e-27!76;CL:0002057!4.39e-26!42;CL:0000048!2.00e-25!430;CL:0002009!4.95e-24!65;CL:0000557!5.31e-24!71;CL:0000723!1.02e-23!436;CL:0000839!1.16e-23!70;CL:0002320!1.67e-23!365;CL:0000738!1.92e-23!140;CL:0000860!2.85e-23!45;CL:0000134!3.71e-23!358;CL:0002194!1.33e-22!63;CL:0000576!1.33e-22!63;CL:0000040!1.33e-22!63;CL:0000559!1.33e-22!63;CL:0000034!1.50e-21!444;CL:0002031!8.18e-20!124;CL:0000219!6.74e-19!390;CL:0002087!2.49e-18!119;CL:0000763!3.68e-17!112;CL:0000049!3.68e-17!112;CL:0000037!3.73e-17!172;CL:0000566!3.73e-17!172;CL:0000988!4.32e-16!182;CL:0002032!5.89e-16!165;CL:0000837!5.89e-16!165;CL:0002371!7.44e-08!591|ontology_enrichment_celltype_v019=CL:0000860;2.41e-46;33!CL:0002057;2.41e-46;33!CL:0000473;1.08e-38;39!CL:0000234;1.08e-38;39!CL:0000576;2.45e-25;48!CL:0000766;1.19e-20;69!CL:0000094;1.94e-10;8!CL:0000763;7.18e-10;100!CL:0000081;3.41e-07;11!CL:0000738;7.16e-07;136|ontology_enrichment_celltype_v019_2=CL:0000473,8.80e-48,48;CL:0000234,8.80e-48,48;CL:0000860,1.15e-47,42;CL:0002057,1.15e-47,42;CL:0000766,1.46e-47,72;CL:0002009,2.14e-42,61;CL:0000557,6.55e-41,67;CL:0002194,2.65e-39,59;CL:0000576,2.65e-39,59;CL:0000040,2.65e-39,59;CL:0000559,2.65e-39,59;CL:0000839,3.92e-37,66;CL:0000763,6.93e-31,108;CL:0000049,6.93e-31,108;CL:0000738,1.90e-26,136;CL:0002031,1.22e-19,120;CL:0000037,4.88e-19,168;CL:0002032,5.26e-18,161;CL:0000837,5.26e-18,161;CL:0002087,8.74e-18,115;CL:0000988,3.39e-17,177;CL:0000134,3.58e-16,354;CL:0002320,2.20e-15,361;CL:0000048,9.60e-15,427;CL:0000723,3.59e-14,433;CL:0000034,1.95e-13,441;CL:0000219,1.23e-12,386;CL:0000094,2.17e-10,8;CL:0000081,3.68e-07,11|ontology_enrichment_development_v019=CL:0002057;1.67e-34;42!CL:0000049;1.54e-09;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.57e-26!102;UBERON:0003061!1.57e-26!102;UBERON:0002371!7.98e-23!80;UBERON:0002384!1.07e-21!375;UBERON:0002193!1.24e-21!112;UBERON:0001474!6.15e-21!86;UBERON:0002204!6.75e-19!167;UBERON:0004765!3.64e-18!101;UBERON:0001434!3.64e-18!101;UBERON:0002405!1.81e-14!115;UBERON:0003081!3.57e-14!216|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.75e-36,98;UBERON:0003061,1.75e-36,98;UBERON:0002371,4.34e-36,76;UBERON:0001474,2.35e-32,82;UBERON:0002193,1.63e-31,108;UBERON:0004765,3.66e-28,90;UBERON:0002405,8.82e-27,93;UBERON:0001434,6.89e-24,100;UBERON:0002204,2.37e-19,167;UBERON:0003081,7.36e-18,203;UBERON:0000926,6.33e-16,315;UBERON:0004120,6.33e-16,315;UBERON:0006603,6.33e-16,315;UBERON:0002384,2.59e-14,371|phase1_expression=1.45342703416445,1.2846031433459,2.25527046553554,3.00219895059391,0.893922188854576,0.872338524100369,0,1.26343974685366,1.04474251279935,0.245733936501509,0,0.218441372130172,0.263766978228454,0,0.331397375727916,0,0.602694528023977,0.730310090387373,0.487932798790507,0.246242116153576,0.204000691244253,0,0,0.410623275218653,0,0.458480434487708,0.492603536699674,0.393553906568396,3.14691421479123,2.68680578668049,1.23852898652861,0,0,0,0.154934401160603,0.284338464974843,0.293600439334847,0.553995408531877,0.601633342410425,0.651032612147555,0.671746422719773,0.32389366601898,0.77272670290256,6.39752250630085,2.64513160582167,3.39617685662943,3.71886459049095,2.05583944010913,3.40677007984614,3.74000110018796,2.30544635876191,4.02019790810595,4.48169384957604,3.22742341791913,4.06279459783025,4.51781614902251,3.82068610080984,3.14612878223118,6.73384563215986,3.20929027076094,3.19668562899521,3.29851300186716,2.79249120670285,3.83602275479425,1.7412554317715,3.40431134814684,1.86846674698672,2.26123798731069,2.60741459210101,3.25783267057675,1.81619850790011,2.20966581592539,5.37986058649504,1.90129757680748,0.637812899895131,1.67726916406701,2.80821577866238,3.45406853535464,1.28580469357664,1.14005097496499,0.39783335439818,1.0959849225878,0,0,0.889509253863555,0.426730222566507,0,1.72425731986345,0,0,0.569212969109448,0,0,0,0,0,0,0.786021525498329,0.205601498999509,0.501559486172034,1.62961133316795,0.946895611469467,3.89653456815823,0.557052284425868,0.589211814949674,0.664601683750863,1.89562704635511,0,0.520237390239513,0,0.276350017785848,0,0.296573126324121,0,1.04535523804977,0,0.766440987203842,0,0,0,0.651083453856419,0,0.602300476311091,0.255973222308837,2.49861453104692,0.236777252044017,0,0,0,0.289648807765598,2.43806866313962,0,0.12786256184353,0,0,0.434539556882471,0.795285947051099,0.486634870302636,0,0,0,0.72038491523742,0,0,1.29818957461873,0.696518949197069,1.46253756570752,0.476981248610684,1.14398982156026,1.11437250398869,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,2.63560834872127,7.75560528296651,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2745 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4330 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=12bp_to_ENST00000507605_5end | |||
|description=CAGE_peak_4_at_GLRX_5end | |||
|id=chr5:95157957..95157982,- | |||
|ontology_enrichment_celltype=CL:0000766!4.34e-27!76;CL:0002057!4.39e-26!42;CL:0000048!2.00e-25!430;CL:0002009!4.95e-24!65;CL:0000557!5.31e-24!71;CL:0000723!1.02e-23!436;CL:0000839!1.16e-23!70;CL:0002320!1.67e-23!365;CL:0000738!1.92e-23!140;CL:0000860!2.85e-23!45;CL:0000134!3.71e-23!358;CL:0002194!1.33e-22!63;CL:0000576!1.33e-22!63;CL:0000040!1.33e-22!63;CL:0000559!1.33e-22!63;CL:0000034!1.50e-21!444;CL:0002031!8.18e-20!124;CL:0000219!6.74e-19!390;CL:0002087!2.49e-18!119;CL:0000763!3.68e-17!112;CL:0000049!3.68e-17!112;CL:0000037!3.73e-17!172;CL:0000566!3.73e-17!172;CL:0000988!4.32e-16!182;CL:0002032!5.89e-16!165;CL:0000837!5.89e-16!165;CL:0002371!7.44e-08!591 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.41e-46;33!CL:0002057;2.41e-46;33!CL:0000473;1.08e-38;39!CL:0000234;1.08e-38;39!CL:0000576;2.45e-25;48!CL:0000766;1.19e-20;69!CL:0000094;1.94e-10;8!CL:0000763;7.18e-10;100!CL:0000081;3.41e-07;11!CL:0000738;7.16e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,8.80e-48,48;CL:0000234,8.80e-48,48;CL:0000860,1.15e-47,42;CL:0002057,1.15e-47,42;CL:0000766,1.46e-47,72;CL:0002009,2.14e-42,61;CL:0000557,6.55e-41,67;CL:0002194,2.65e-39,59;CL:0000576,2.65e-39,59;CL:0000040,2.65e-39,59;CL:0000559,2.65e-39,59;CL:0000839,3.92e-37,66;CL:0000763,6.93e-31,108;CL:0000049,6.93e-31,108;CL:0000738,1.90e-26,136;CL:0002031,1.22e-19,120;CL:0000037,4.88e-19,168;CL:0002032,5.26e-18,161;CL:0000837,5.26e-18,161;CL:0002087,8.74e-18,115;CL:0000988,3.39e-17,177;CL:0000134,3.58e-16,354;CL:0002320,2.20e-15,361;CL:0000048,9.60e-15,427;CL:0000723,3.59e-14,433;CL:0000034,1.95e-13,441;CL:0000219,1.23e-12,386;CL:0000094,2.17e-10,8;CL:0000081,3.68e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;1.67e-34;42!CL:0000049;1.54e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.57e-26!102;UBERON:0003061!1.57e-26!102;UBERON:0002371!7.98e-23!80;UBERON:0002384!1.07e-21!375;UBERON:0002193!1.24e-21!112;UBERON:0001474!6.15e-21!86;UBERON:0002204!6.75e-19!167;UBERON:0004765!3.64e-18!101;UBERON:0001434!3.64e-18!101;UBERON:0002405!1.81e-14!115;UBERON:0003081!3.57e-14!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.75e-36,98;UBERON:0003061,1.75e-36,98;UBERON:0002371,4.34e-36,76;UBERON:0001474,2.35e-32,82;UBERON:0002193,1.63e-31,108;UBERON:0004765,3.66e-28,90;UBERON:0002405,8.82e-27,93;UBERON:0001434,6.89e-24,100;UBERON:0002204,2.37e-19,167;UBERON:0003081,7.36e-18,203;UBERON:0000926,6.33e-16,315;UBERON:0004120,6.33e-16,315;UBERON:0006603,6.33e-16,315;UBERON:0002384,2.59e-14,371 | |||
|phase1_expression=1.45342703416445,1.2846031433459,2.25527046553554,3.00219895059391,0.893922188854576,0.872338524100369,0,1.26343974685366,1.04474251279935,0.245733936501509,0,0.218441372130172,0.263766978228454,0,0.331397375727916,0,0.602694528023977,0.730310090387373,0.487932798790507,0.246242116153576,0.204000691244253,0,0,0.410623275218653,0,0.458480434487708,0.492603536699674,0.393553906568396,3.14691421479123,2.68680578668049,1.23852898652861,0,0,0,0.154934401160603,0.284338464974843,0.293600439334847,0.553995408531877,0.601633342410425,0.651032612147555,0.671746422719773,0.32389366601898,0.77272670290256,6.39752250630085,2.64513160582167,3.39617685662943,3.71886459049095,2.05583944010913,3.40677007984614,3.74000110018796,2.30544635876191,4.02019790810595,4.48169384957604,3.22742341791913,4.06279459783025,4.51781614902251,3.82068610080984,3.14612878223118,6.73384563215986,3.20929027076094,3.19668562899521,3.29851300186716,2.79249120670285,3.83602275479425,1.7412554317715,3.40431134814684,1.86846674698672,2.26123798731069,2.60741459210101,3.25783267057675,1.81619850790011,2.20966581592539,5.37986058649504,1.90129757680748,0.637812899895131,1.67726916406701,2.80821577866238,3.45406853535464,1.28580469357664,1.14005097496499,0.39783335439818,1.0959849225878,0,0,0.889509253863555,0.426730222566507,0,1.72425731986345,0,0,0.569212969109448,0,0,0,0,0,0,0.786021525498329,0.205601498999509,0.501559486172034,1.62961133316795,0.946895611469467,3.89653456815823,0.557052284425868,0.589211814949674,0.664601683750863,1.89562704635511,0,0.520237390239513,0,0.276350017785848,0,0.296573126324121,0,1.04535523804977,0,0.766440987203842,0,0,0,0.651083453856419,0,0.602300476311091,0.255973222308837,2.49861453104692,0.236777252044017,0,0,0,0.289648807765598,2.43806866313962,0,0.12786256184353,0,0,0.434539556882471,0.795285947051099,0.486634870302636,0,0,0,0.72038491523742,0,0,1.29818957461873,0.696518949197069,1.46253756570752,0.476981248610684,1.14398982156026,1.11437250398869,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,2.63560834872127,7.75560528296651,0,0,0.506522046658319,1.05927344650575,0,0.354668382198357,0,0,0.24666754841716,0.933633106199299,0.134710672069688,0.326923806226917,0,0,0,0.312160076830321,0,0.448346041655403,0.117434498643765,0,0,0.204154171254893,0.491337269247072,0.103325781175765,1.18800285728205,0.494533858557114,0,0,0.168336113954066,0,0,0,0.612975591598039,0.45071417671979,0,0.179389635688862,0.213557388818567,0.847727604638247,0,0.309157587715317,0.257640540045629,0.37223371266318,0,0.194874010322397,0,0.276149695926898,0.323292113637624,0.355009592516614,0.906768884048762,0.508681776931463,0,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,1.44375896333917,0,0,0,0.330881918197182,0,0,0,0,0,0,0,0,1.47008711385542,2.53510069643662,0,0,0,0,0.514703430895577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738651018262192,4.91408956792399,1.33768046059855,0.93733833986777,0,0,0.0895585227028483,0,0,0,0.704387472105808,1.03664057770386,0.720599767084807,1.38866676769018,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0.1466765716419,1.93907573636667,0,0,3.98907174877306,2.08014873822732,0.257207374262142,0,0.266422179016099,0.285955987316295,0,0.823240336780769,0.65147236858747,0.710783897485092,0.791951872933429,0,0,0.199945982364114,2.43247561282381,0.502257091432126,0,0.718874566474748,0,1.42636905040718,1.59259437334337,0,0.537182889719687,0.112085143993527,0.591092280605782,0.646882724578552,0.641715181398742,0,0,0.773288812777695,0,0,6.74106321552464,0,6.21623270154053,0.24538298343828,0.500170521059677,0.542530047399471,0,0.713715955188647,0.157702415033935,0.234282829985426,0.601892199455438,2.27407504055985,0,1.32845119707087,0.184369168541703,1.21637060255316,0,0.343143423810856,2.06768026122887,0.862856803274467,0.213455115606889,0,0,0,0.744323423456331,0.61384789315225,1.40330047216537,2.69092213436972,1.53512174720011,1.60853921143608,2.96836132889982,0.308419387605311,0.710246901252508,0.164254312027618,0,0,0.241718899183244,0.200506470303285,0,1.37777337797528,3.45973219212762,0.655622074797121,0.451199612907412,0.539107359730903,0,1.46139224653261,0.422206515571503,0,0,0,0,0.270946437543853,0,0,0,1.11937377361089,0.219259876645935,0.784306353074702,0.256450125116389,0,0,0.412164046590889,0,0.165018999841176,0,0,0,0.096670718292122,0.770243085573222,0.307007349452259,0.275673144969061,0.107420244868274,0.290033387828457,0.0852266274161009,0.445160178233687,0,0,0.127612712494584,0,3.71876439437829,1.25924938732256,0.6970372701606,0,0.532306030317022,0,0.18532421910392,0.143124886741991,0.372158369359667,0.316379424718726,1.33441135746677,0.255897791311334,0,0,0,0.359744915166629,0.274537029736055,0.235624804691373,0.606547444719948,1.58510321173008,0.421258456238981,0,0,0,1.77449884830381,1.1312434556297,0,0,0,0.438450885253763,0.578775534266688,0,0.202910376962704,1.239293992399,0,0.573645408816206,0,0.7133421029625,0,0.422215270595328,0.658589785919804,0,0,0.0962221127255121,0,0,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| |||
|short_description=p4@GLRX | |||
}} |
Revision as of 16:58, 13 September 2013
Short description: | p4@GLRX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_GLRX_5end |
Coexpression cluster: | NA |
Association with transcript: | 12bp_to_ENST00000507605_5end |
EntrezGene: | GLRX |
HGNC: | 4330 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 8.80e-48 | 48 |
phagocyte | 8.80e-48 | 48 |
classical monocyte | 1.15e-47 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.15e-47 | 42 |
myeloid leukocyte | 1.46e-47 | 72 |
macrophage dendritic cell progenitor | 2.14e-42 | 61 |
granulocyte monocyte progenitor cell | 6.55e-41 | 67 |
monopoietic cell | 2.65e-39 | 59 |
monocyte | 2.65e-39 | 59 |
monoblast | 2.65e-39 | 59 |
promonocyte | 2.65e-39 | 59 |
myeloid lineage restricted progenitor cell | 3.92e-37 | 66 |
myeloid cell | 6.93e-31 | 108 |
common myeloid progenitor | 6.93e-31 | 108 |
leukocyte | 1.90e-26 | 136 |
hematopoietic lineage restricted progenitor cell | 1.22e-19 | 120 |
hematopoietic stem cell | 4.88e-19 | 168 |
hematopoietic oligopotent progenitor cell | 5.26e-18 | 161 |
hematopoietic multipotent progenitor cell | 5.26e-18 | 161 |
nongranular leukocyte | 8.74e-18 | 115 |
hematopoietic cell | 3.39e-17 | 177 |
mesenchymal cell | 3.58e-16 | 354 |
connective tissue cell | 2.20e-15 | 361 |
multi fate stem cell | 9.60e-15 | 427 |
somatic stem cell | 3.59e-14 | 433 |
stem cell | 1.95e-13 | 441 |
motile cell | 1.23e-12 | 386 |
granulocyte | 2.17e-10 | 8 |
blood cell | 3.68e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.75e-36 | 98 |
blood island | 1.75e-36 | 98 |
bone marrow | 4.34e-36 | 76 |
bone element | 2.35e-32 | 82 |
hemolymphoid system | 1.63e-31 | 108 |
skeletal element | 3.66e-28 | 90 |
immune system | 8.82e-27 | 93 |
skeletal system | 6.89e-24 | 100 |
musculoskeletal system | 2.37e-19 | 167 |
lateral plate mesoderm | 7.36e-18 | 203 |
mesoderm | 6.33e-16 | 315 |
mesoderm-derived structure | 6.33e-16 | 315 |
presumptive mesoderm | 6.33e-16 | 315 |
connective tissue | 2.59e-14 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.