FFCP PHASE1:Hg19::chr5:80256453..80256506,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5924|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9876|TSSclassifier=S|UniProt=O14827|association_with_transcript=0bp_to_ENST00000265080_5end|coexpression_cluster_id=C2996|description=CAGE_peak_2_at_RASGRF2_5end|id=chr5:80256453..80256506,+|ontology_enrichment_celltype=CL:0000791!1.07e-10!18;CL:0000789!1.07e-10!18;CL:0002420!1.07e-10!18;CL:0002419!1.07e-10!18;CL:0000790!1.07e-10!18;CL:0000625!1.00e-08!11|ontology_enrichment_celltype_v019=CL:0000791;2.55e-12;18!CL:0000789;2.55e-12;18!CL:0002419;2.55e-12;18!CL:0000625;1.84e-10;11!CL:0000084;4.75e-07;25|ontology_enrichment_celltype_v019_2=CL:0000791,2.47e-12,18;CL:0000789,2.47e-12,18;CL:0002420,2.47e-12,18;CL:0002419,2.47e-12,18;CL:0000790,2.47e-12,18;CL:0000625,1.81e-10,11;CL:0000084,4.64e-07,25;CL:0000827,4.64e-07,25|ontology_enrichment_development_v019=CL:0000790;2.55e-12;18!UBERON:0006601;1.31e-07;82|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!7.92e-39!115;UBERON:0003075!8.08e-24!86;UBERON:0007284!8.08e-24!86;UBERON:0001049!2.61e-21!57;UBERON:0005068!2.61e-21!57;UBERON:0006241!2.61e-21!57;UBERON:0007135!2.61e-21!57;UBERON:0002346!3.20e-21!90;UBERON:0005743!7.54e-21!86;UBERON:0001017!4.60e-20!82;UBERON:0002616!3.28e-19!59;UBERON:0000153!3.79e-19!129;UBERON:0007811!3.79e-19!129;UBERON:0003056!9.61e-19!61;UBERON:0000033!1.35e-18!123;UBERON:0000955!2.16e-17!69;UBERON:0006238!2.16e-17!69;UBERON:0000073!2.24e-17!94;UBERON:0001016!2.24e-17!94;UBERON:0003080!2.10e-16!42;UBERON:0002780!3.67e-16!41;UBERON:0001890!3.67e-16!41;UBERON:0006240!3.67e-16!41;UBERON:0004121!5.70e-15!169;UBERON:0001893!7.06e-15!34;UBERON:0002020!1.53e-14!34;UBERON:0003528!1.53e-14!34;UBERON:0002791!3.28e-14!33;UBERON:0000924!1.06e-13!173;UBERON:0006601!1.06e-13!173;UBERON:0001869!1.30e-13!32;UBERON:0000477!4.32e-13!286;UBERON:0004111!9.36e-13!241;UBERON:0002619!6.49e-10!22;UBERON:0000956!7.36e-10!25;UBERON:0000203!7.36e-10!25;UBERON:0000025!1.12e-09!194;UBERON:0000064!1.31e-09!219;UBERON:0001950!4.17e-09!20;UBERON:0000119!1.11e-08!312;UBERON:0000483!3.49e-08!309;UBERON:0000481!1.03e-07!347|ontology_enrichment_uberon_v019=UBERON:0001893;1.45e-14;34!UBERON:0003528;6.78e-14;34!UBERON:0002020;6.78e-14;34!UBERON:0001869;1.12e-13;32!UBERON:0002791;1.47e-13;32!UBERON:0002780;4.40e-13;41!UBERON:0001890;4.40e-13;41!UBERON:0000073;2.86e-11;53!UBERON:0002616;2.86e-11;53!UBERON:0007023;4.00e-11;114!UBERON:0002619;5.62e-11;22!UBERON:0000956;1.57e-10;25!UBERON:0000203;1.57e-10;25!UBERON:0001950;4.24e-10;20!UBERON:0001017;1.49e-08;75!UBERON:0000125;1.81e-07;9!UBERON:0002308;1.81e-07;9!UBERON:0000955;3.34e-07;68!UBERON:0002420;4.03e-07;9!UBERON:0007245;4.03e-07;9!UBERON:0010009;4.03e-07;9!UBERON:0010011;4.03e-07;9!UBERON:0000454;4.03e-07;9!UBERON:0001016;5.96e-07;83|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.45e-42,114;UBERON:0003075,1.40e-26,82;UBERON:0007284,1.40e-26,82;UBERON:0002346,3.61e-24,86;UBERON:0001049,2.33e-22,56;UBERON:0005068,2.33e-22,56;UBERON:0006241,2.33e-22,56;UBERON:0007135,2.33e-22,56;UBERON:0003056,8.51e-22,61;UBERON:0000073,3.86e-20,53;UBERON:0002616,3.86e-20,53;UBERON:0001017,1.22e-19,81;UBERON:0002780,1.50e-18,41;UBERON:0001890,1.50e-18,41;UBERON:0003080,1.50e-18,41;UBERON:0006240,1.50e-18,41;UBERON:0010314,1.71e-18,132;UBERON:0010371,7.83e-18,104;UBERON:0001893,1.10e-16,34;UBERON:0001016,1.13e-16,89;UBERON:0000955,1.77e-16,68;UBERON:0006238,1.77e-16,68;UBERON:0003528,2.76e-16,34;UBERON:0002020,2.76e-16,34;UBERON:0004121,3.74e-15,171;UBERON:0000924,3.74e-15,171;UBERON:0006601,3.74e-15,171;UBERON:0001869,3.81e-15,32;UBERON:0002791,5.24e-15,32;UBERON:0002619,4.46e-11,22;UBERON:0000956,1.39e-10,25;UBERON:0000203,1.39e-10,25;UBERON:0004111,4.21e-10,240;UBERON:0001950,4.43e-10,20;UBERON:0011216,1.73e-09,223;UBERON:0000125,1.59e-07,9;UBERON:0002308,1.59e-07,9;UBERON:0002420,3.49e-07,9;UBERON:0007245,3.49e-07,9;UBERON:0010009,3.49e-07,9;UBERON:0010011,3.49e-07,9;UBERON:0000454,3.49e-07,9|phase1_expression=0,0,0,0,0,0,0,0,0,4.17747692052565,0,0,0.263766978228454,0.123766352960047,0,0,0,0.730310090387373,0,0.369363174230364,0.204000691244253,0.313454721478088,1.43117993565528,1.23186982565596,0.251085279189606,0,0,0,0.786728553697808,1.91914699048606,0.928896739896456,0,0,0,0,0,0,0.553995408531877,1.20326668482085,3.03815219002193,0.447830948479849,2.91504299417082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0.434377689410233,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0.382273228125229,0,0.560508562981536,0,19.0808477010418,10.2182798314783,7.81285696198135,1.17030546773475,14.6665019985116,15.1503297835115,7.79306913631645,1.33692548262208,0.589211814949674,3.76607620792156,1.35401931882508,0.512365278902701,0.780356085359269,12.4972807498794,9.119550586933,12.4615326866073,16.3115219478266,22.2058887314462,18.8163942848958,4.30575502250752,9.58051234004803,9.96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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5924 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9876 | |||
|TSSclassifier=S | |||
|UniProt=O14827 | |||
|association_with_transcript=0bp_to_ENST00000265080_5end | |||
|coexpression_cluster_id=C2996 | |||
|description=CAGE_peak_2_at_RASGRF2_5end | |||
|id=chr5:80256453..80256506,+ | |||
|ontology_enrichment_celltype=CL:0000791!1.07e-10!18;CL:0000789!1.07e-10!18;CL:0002420!1.07e-10!18;CL:0002419!1.07e-10!18;CL:0000790!1.07e-10!18;CL:0000625!1.00e-08!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.55e-12;18!CL:0000789;2.55e-12;18!CL:0002419;2.55e-12;18!CL:0000625;1.84e-10;11!CL:0000084;4.75e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.47e-12,18;CL:0000789,2.47e-12,18;CL:0002420,2.47e-12,18;CL:0002419,2.47e-12,18;CL:0000790,2.47e-12,18;CL:0000625,1.81e-10,11;CL:0000084,4.64e-07,25;CL:0000827,4.64e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000790;2.55e-12;18!UBERON:0006601;1.31e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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| |||
|short_description=p2@RASGRF2 | |||
}} |
Revision as of 16:39, 13 September 2013
Short description: | p2@RASGRF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_RASGRF2_5end |
Coexpression cluster: | C2996_optic_CD4_corpus_thalamus_globus_spinal_diencephalon |
Association with transcript: | 0bp_to_ENST00000265080_5end |
EntrezGene: | RASGRF2 |
HGNC: | 9876 |
UniProt: | O14827 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.47e-12 | 18 |
alpha-beta T cell | 2.47e-12 | 18 |
immature T cell | 2.47e-12 | 18 |
mature T cell | 2.47e-12 | 18 |
immature alpha-beta T cell | 2.47e-12 | 18 |
CD8-positive, alpha-beta T cell | 1.81e-10 | 11 |
T cell | 4.64e-07 | 25 |
pro-T cell | 4.64e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.