FFCP PHASE1:Hg19::chr4:165953147..165953161,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=166655|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21162|TSSclassifier=S|UniProt=D6RAS2,Q495X7|association_with_transcript=0bp_to_ENST00000507119,NM_152620,uc003iqy.1_5end|coexpression_cluster_id=C1937|description=CAGE_peak_3_at_TRIM60_5end|id=chr4:165953147..165953161,+|ontology_enrichment_celltype=CL:0000039!8.88e-69!7;CL:0000586!8.88e-69!7;CL:0000054!8.04e-08!2;CL:0000137!8.04e-08!2;CL:0000092!8.04e-08!2|ontology_enrichment_celltype_v019=CL:0000039;5.51e-144;7!CL:0000586;5.51e-144;7!CL:0002541;1.09e-10;3|ontology_enrichment_celltype_v019_2=CL:0000039,5.52e-144,7;CL:0000586,5.52e-144,7;CL:0002541,1.09e-10,3|ontology_enrichment_development_v019=UBERON:0009117;2.49e-45;10!UBERON:0005564;2.49e-45;10|ontology_enrichment_disease=DOID:3095!8.22e-22!22;DOID:2994!8.22e-22!22;DOID:1799!1.23e-14!1;DOID:10165!1.23e-14!1;DOID:1798!1.23e-14!1;DOID:0060085!2.41e-14!1;DOID:3165!2.41e-14!1;DOID:0060121!2.41e-14!1;DOID:2438!2.41e-14!1;DOID:4418!2.41e-14!1;DOID:200!8.04e-08!2;DOID:4305!8.04e-08!2|ontology_enrichment_disease_v019=DOID:3095;2.88e-46;22!DOID:2994;2.88e-46;22|ontology_enrichment_disease_v019_2=DOID:3095,2.88e-46,22;DOID:2994,2.88e-46,22;DOID:0050687,2.39e-07,143|ontology_enrichment_uberon=UBERON:0000473!2.39e-59!8;UBERON:0003135!3.71e-43!11;UBERON:0000991!1.51e-22!21;UBERON:0009196!1.51e-22!21;UBERON:0009117!1.51e-22!21;UBERON:0005564!1.51e-22!21;UBERON:0004176!1.63e-21!22;UBERON:0003101!1.63e-21!22;UBERON:0000079!1.63e-21!22;UBERON:0002323!1.16e-13!46;UBERON:0003133!4.68e-13!48;UBERON:0004458!8.54e-13!49;UBERON:0005156!1.61e-10!59;UBERON:0000990!1.61e-10!59;UBERON:0003886!7.89e-10!63;UBERON:0002553!8.67e-09!70;UBERON:0003124!1.53e-08!7|ontology_enrichment_uberon_v019=UBERON:0000473;1.87e-56;8!UBERON:0003135;2.78e-41;11!UBERON:0000991;5.79e-22;21!UBERON:0003101;5.39e-21;22!UBERON:0000079;5.39e-21;22!UBERON:0003124;1.09e-10;3!UBERON:0000920;1.09e-10;3!UBERON:0002323;6.29e-10;45!UBERON:0003133;3.20e-08;44!UBERON:0000922;6.05e-08;49|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.88e-56,8;UBERON:0003135,2.78e-41,11;UBERON:0000991,5.79e-22,21;UBERON:0009196,5.79e-22,21;UBERON:0009117,5.79e-22,21;UBERON:0005564,5.79e-22,21;UBERON:0004176,5.39e-21,22;UBERON:0003101,5.39e-21,22;UBERON:0000079,5.39e-21,22;UBERON:0000920,1.09e-10,3;UBERON:0002323,2.51e-10,46;UBERON:0003133,6.46e-10,48;UBERON:0004458,1.01e-09,49;UBERON:0003886,7.27e-09,54;UBERON:0005156,3.77e-08,59;UBERON:0000990,3.77e-08,59;UBERON:0002553,6.76e-08,61|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3056390438806,3.05175990993225,0,0,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785720083444267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354809480650555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65170957329153,1.3360870263278,2.20547758883628,1.0028301571695,0.303114792872958,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p3@TRIM60}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=166655 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21162 | |||
|TSSclassifier=S | |||
|UniProt=D6RAS2,Q495X7 | |||
|association_with_transcript=0bp_to_ENST00000507119,NM_152620,uc003iqy.1_5end | |||
|coexpression_cluster_id=C1937 | |||
|description=CAGE_peak_3_at_TRIM60_5end | |||
|id=chr4:165953147..165953161,+ | |||
|ontology_enrichment_celltype=CL:0000039!8.88e-69!7;CL:0000586!8.88e-69!7;CL:0000054!8.04e-08!2;CL:0000137!8.04e-08!2;CL:0000092!8.04e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0000039;5.51e-144;7!CL:0000586;5.51e-144;7!CL:0002541;1.09e-10;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,5.52e-144,7;CL:0000586,5.52e-144,7;CL:0002541,1.09e-10,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.49e-45;10!UBERON:0005564;2.49e-45;10 | |||
|ontology_enrichment_disease=DOID:3095!8.22e-22!22;DOID:2994!8.22e-22!22;DOID:1799!1.23e-14!1;DOID:10165!1.23e-14!1;DOID:1798!1.23e-14!1;DOID:0060085!2.41e-14!1;DOID:3165!2.41e-14!1;DOID:0060121!2.41e-14!1;DOID:2438!2.41e-14!1;DOID:4418!2.41e-14!1;DOID:200!8.04e-08!2;DOID:4305!8.04e-08!2 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.88e-46;22!DOID:2994;2.88e-46;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.88e-46,22;DOID:2994,2.88e-46,22;DOID:0050687,2.39e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000473!2.39e-59!8;UBERON:0003135!3.71e-43!11;UBERON:0000991!1.51e-22!21;UBERON:0009196!1.51e-22!21;UBERON:0009117!1.51e-22!21;UBERON:0005564!1.51e-22!21;UBERON:0004176!1.63e-21!22;UBERON:0003101!1.63e-21!22;UBERON:0000079!1.63e-21!22;UBERON:0002323!1.16e-13!46;UBERON:0003133!4.68e-13!48;UBERON:0004458!8.54e-13!49;UBERON:0005156!1.61e-10!59;UBERON:0000990!1.61e-10!59;UBERON:0003886!7.89e-10!63;UBERON:0002553!8.67e-09!70;UBERON:0003124!1.53e-08!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.87e-56;8!UBERON:0003135;2.78e-41;11!UBERON:0000991;5.79e-22;21!UBERON:0003101;5.39e-21;22!UBERON:0000079;5.39e-21;22!UBERON:0003124;1.09e-10;3!UBERON:0000920;1.09e-10;3!UBERON:0002323;6.29e-10;45!UBERON:0003133;3.20e-08;44!UBERON:0000922;6.05e-08;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.88e-56,8;UBERON:0003135,2.78e-41,11;UBERON:0000991,5.79e-22,21;UBERON:0009196,5.79e-22,21;UBERON:0009117,5.79e-22,21;UBERON:0005564,5.79e-22,21;UBERON:0004176,5.39e-21,22;UBERON:0003101,5.39e-21,22;UBERON:0000079,5.39e-21,22;UBERON:0000920,1.09e-10,3;UBERON:0002323,2.51e-10,46;UBERON:0003133,6.46e-10,48;UBERON:0004458,1.01e-09,49;UBERON:0003886,7.27e-09,54;UBERON:0005156,3.77e-08,59;UBERON:0000990,3.77e-08,59;UBERON:0002553,6.76e-08,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3056390438806,3.05175990993225,0,0,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785720083444267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354809480650555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65170957329153,1.3360870263278,2.20547758883628,1.0028301571695,0.303114792872958,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@TRIM60 | |||
}} |
Revision as of 03:11, 13 September 2013
Short description: | p3@TRIM60 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_TRIM60_5end |
Coexpression cluster: | C1937_choriocarcinoma_thyroid_testicular_throat_Alveolar_lung_pancreatic |
Association with transcript: | 0bp_to_ENST00000507119, NM_152620, uc003iqy.1_5end |
EntrezGene: | TRIM60 |
HGNC: | 21162 |
UniProt: | D6RAS2Q495X7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 5.52e-144 | 7 |
germ cell | 5.52e-144 | 7 |
chorionic membrane mesenchymal stem cell | 1.09e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
testis | 1.88e-56 | 8 |
male reproductive organ | 2.78e-41 | 11 |
gonad | 5.79e-22 | 21 |
indifferent external genitalia | 5.79e-22 | 21 |
indifferent gonad | 5.79e-22 | 21 |
gonad primordium | 5.79e-22 | 21 |
external genitalia | 5.39e-21 | 22 |
male organism | 5.39e-21 | 22 |
male reproductive system | 5.39e-21 | 22 |
egg chorion | 1.09e-10 | 3 |
body cavity | 2.51e-10 | 46 |
reproductive organ | 6.46e-10 | 48 |
body cavity or lining | 1.01e-09 | 49 |
body cavity precursor | 7.27e-09 | 54 |
reproductive structure | 3.77e-08 | 59 |
reproductive system | 3.77e-08 | 59 |
anatomical cavity | 6.76e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.88e-46 | 22 |
germ cell cancer | 2.88e-46 | 22 |
cell type cancer | 2.39e-07 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.