FFCP PHASE1:Hg19::chr3:195310831..195310845,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=347|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=612|TSSclassifier=S|UniProt=F8WBT9|association_with_transcript=-6bp_to_ENST00000458447_5end|coexpression_cluster_id=C4|description=CAGE_peak_2_at_APOD_5end|id=chr3:195310831..195310845,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000136;7.75e-08;13|ontology_enrichment_celltype_v019_2=CL:0000136,1.80e-07,15|ontology_enrichment_development_v019=UBERON:0006601;2.18e-09;82|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.79e-48!115;UBERON:0001049!2.77e-26!57;UBERON:0005068!2.77e-26!57;UBERON:0006241!2.77e-26!57;UBERON:0007135!2.77e-26!57;UBERON:0002616!1.72e-24!59;UBERON:0001017!1.20e-21!82;UBERON:0000955!5.48e-21!69;UBERON:0006238!5.48e-21!69;UBERON:0005743!1.15e-20!86;UBERON:0003080!2.09e-20!42;UBERON:0002346!6.50e-20!90;UBERON:0003075!8.86e-20!86;UBERON:0007284!8.86e-20!86;UBERON:0002780!1.06e-19!41;UBERON:0001890!1.06e-19!41;UBERON:0006240!1.06e-19!41;UBERON:0000073!1.46e-18!94;UBERON:0001016!1.46e-18!94;UBERON:0000153!2.27e-17!129;UBERON:0007811!2.27e-17!129;UBERON:0000033!5.11e-17!123;UBERON:0001893!3.40e-16!34;UBERON:0002020!3.96e-16!34;UBERON:0003528!3.96e-16!34;UBERON:0002791!1.55e-15!33;UBERON:0000924!2.10e-15!173;UBERON:0006601!2.10e-15!173;UBERON:0004121!4.44e-15!169;UBERON:0001869!9.34e-15!32;UBERON:0003056!6.88e-14!61;UBERON:0000475!1.12e-13!365;UBERON:0002619!1.98e-13!22;UBERON:0001950!3.40e-12!20;UBERON:0004111!8.57e-12!241;UBERON:0000477!3.42e-11!286;UBERON:0000468!9.24e-11!659;UBERON:0000956!1.98e-10!25;UBERON:0000203!1.98e-10!25;UBERON:0000119!7.51e-10!312;UBERON:0000483!2.00e-09!309;UBERON:0000481!2.98e-09!347;UBERON:0000064!1.23e-08!219;UBERON:0000025!1.46e-07!194;UBERON:0002308!1.53e-07!9;UBERON:0000125!1.53e-07!9;UBERON:0000480!1.98e-07!626;UBERON:0000467!2.14e-07!625;UBERON:0002420!2.16e-07!9;UBERON:0007245!2.16e-07!9;UBERON:0010009!2.16e-07!9;UBERON:0010011!2.16e-07!9;UBERON:0000454!2.16e-07!9;UBERON:0002298!2.97e-07!8;UBERON:0003076!4.44e-07!15;UBERON:0003057!4.44e-07!15|ontology_enrichment_uberon_v019=UBERON:0002780;2.39e-16;41!UBERON:0001890;2.39e-16;41!UBERON:0001893;1.43e-15;34!UBERON:0007023;2.37e-15;114!UBERON:0003528;2.65e-15;34!UBERON:0002020;2.65e-15;34!UBERON:0002791;4.20e-15;32!UBERON:0001869;4.78e-15;32!UBERON:0000073;8.02e-15;53!UBERON:0002616;8.02e-15;53!UBERON:0002619;1.58e-14;22!UBERON:0001950;4.13e-13;20!UBERON:0000956;1.11e-11;25!UBERON:0000203;1.11e-11;25!UBERON:0001017;7.46e-11;75!UBERON:0000955;3.37e-10;68!UBERON:0001016;3.66e-09;83!UBERON:0000125;1.84e-08;9!UBERON:0002308;1.84e-08;9!UBERON:0002420;2.73e-08;9!UBERON:0007245;2.73e-08;9!UBERON:0010009;2.73e-08;9!UBERON:0010011;2.73e-08;9!UBERON:0000454;2.73e-08;9!UBERON:0009663;6.70e-07;7!UBERON:0011216;8.61e-07;132|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.62e-56,114;UBERON:0001049,2.91e-28,56;UBERON:0005068,2.91e-28,56;UBERON:0006241,2.91e-28,56;UBERON:0007135,2.91e-28,56;UBERON:0000073,6.26e-26,53;UBERON:0002616,6.26e-26,53;UBERON:0002780,2.45e-22,41;UBERON:0001890,2.45e-22,41;UBERON:0003080,2.45e-22,41;UBERON:0006240,2.45e-22,41;UBERON:0002346,4.45e-22,86;UBERON:0001017,7.70e-22,81;UBERON:0003075,8.37e-22,82;UBERON:0007284,8.37e-22,82;UBERON:0000955,1.33e-21,68;UBERON:0006238,1.33e-21,68;UBERON:0010314,1.85e-21,132;UBERON:0010371,1.09e-20,104;UBERON:0001016,4.60e-20,89;UBERON:0001893,2.72e-18,34;UBERON:0003528,3.23e-18,34;UBERON:0002020,3.23e-18,34;UBERON:0002791,1.05e-16,32;UBERON:0001869,1.23e-16,32;UBERON:0004121,1.31e-16,171;UBERON:0000924,1.31e-16,171;UBERON:0006601,1.31e-16,171;UBERON:0011216,1.34e-15,223;UBERON:0003056,5.68e-15,61;UBERON:0002619,1.68e-14,22;UBERON:0001950,4.38e-13,20;UBERON:0000956,1.17e-11,25;UBERON:0000203,1.17e-11,25;UBERON:0004111,3.99e-11,240;UBERON:0000125,1.86e-08,9;UBERON:0002308,1.86e-08,9;UBERON:0002420,2.75e-08,9;UBERON:0007245,2.75e-08,9;UBERON:0010009,2.75e-08,9;UBERON:0010011,2.75e-08,9;UBERON:0000454,2.75e-08,9;UBERON:0000119,4.91e-08,309;UBERON:0000483,1.27e-07,306;UBERON:0003076,3.67e-07,15;UBERON:0003057,3.67e-07,15;UBERON:0000025,5.05e-07,192;UBERON:0009663,6.75e-07,7|phase1_expression=45.7829515761803,33.3996817269934,56.9455792547723,5.00366491765652,2.23480547213644,12.2127393374052,10.1319951267324,337.970132283355,267.976454533034,0.245733936501509,0,0,0,2.22779435328084,1.98838425436749,0,0,0,0,0.123121058076788,0,0.313454721478088,0,0,0,0,0.0821005894499457,0,0,0,0,0,1.204823675113,2.58827807116751,1.47187681102573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,2.42938867502708,0,0,0.289693037921647,0,0.486634870302636,0,0,0.087834785693126,73.9376881184588,0,0,0.649094787309367,0.522389211897802,1.0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=347 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=612 | |||
|TSSclassifier=S | |||
|UniProt=F8WBT9 | |||
|association_with_transcript=-6bp_to_ENST00000458447_5end | |||
|coexpression_cluster_id=C4 | |||
|description=CAGE_peak_2_at_APOD_5end | |||
|id=chr3:195310831..195310845,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000136;7.75e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.80e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.18e-09;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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| |||
|short_description=p2@APOD | |||
}} |
Revision as of 23:30, 12 September 2013
Short description: | p2@APOD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_APOD_5end |
Coexpression cluster: | C4_optic_corpus_substantia_medulla_spinal_thalamus_globus |
Association with transcript: | -6bp_to_ENST00000458447_5end |
EntrezGene: | APOD |
HGNC: | 612 |
UniProt: | F8WBT9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.80e-07 | 15 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.