FFCP PHASE1:Hg19::chr3:42642138..42642200,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4820|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7833|TSSclassifier=S|UniProt=A8K7K2,P30414,Q6N014|association_with_transcript=0bp_to_ENST00000429888,ENST00000460910,ENST00000468735,ENST00000487466,NM_005385,uc003cll.1,uc003clm.1,uc003clo.2,uc003clp.2,uc011azp.1_5end|coexpression_cluster_id=C2651|description=CAGE_peak_1_at_NKTR_5end|id=chr3:42642138..42642200,+|ontology_enrichment_celltype=CL:0000037!5.04e-23!172;CL:0000566!5.04e-23!172;CL:0000738!1.18e-20!140;CL:0002032!5.04e-20!165;CL:0000837!5.04e-20!165;CL:0000988!5.49e-20!182;CL:0002031!3.84e-15!124;CL:0002087!1.30e-14!119;CL:0000838!5.40e-14!52;CL:0000542!7.62e-14!53;CL:0000051!7.62e-14!53;CL:0000791!5.06e-11!18;CL:0000789!5.06e-11!18;CL:0002420!5.06e-11!18;CL:0002419!5.06e-11!18;CL:0000790!5.06e-11!18;CL:0000084!1.30e-09!25;CL:0000827!1.30e-09!25;CL:0000763!3.67e-08!112;CL:0000049!3.67e-08!112;CL:0000625!7.84e-08!11|ontology_enrichment_celltype_v019=CL:0000791;4.63e-11;18!CL:0000789;4.63e-11;18!CL:0002419;4.63e-11;18!CL:0000084;9.70e-10;25!CL:0000542;7.19e-09;53!CL:0000625;7.46e-08;11|ontology_enrichment_celltype_v019_2=CL:0000037,1.36e-23,168;CL:0000738,2.69e-21,136;CL:0000988,6.16e-21,177;CL:0002032,1.50e-20,161;CL:0000837,1.50e-20,161;CL:0002031,1.10e-15,120;CL:0002087,3.70e-15,115;CL:0000838,5.40e-14,52;CL:0000542,7.62e-14,53;CL:0000051,7.62e-14,53;CL:0000791,5.06e-11,18;CL:0000789,5.06e-11,18;CL:0002420,5.06e-11,18;CL:0002419,5.06e-11,18;CL:0000790,5.06e-11,18;CL:0000084,1.30e-09,25;CL:0000827,1.30e-09,25;CL:0000763,1.71e-08,108;CL:0000049,1.71e-08,108;CL:0000625,7.84e-08,11|ontology_enrichment_development_v019=CL:0000790;4.63e-11;18!CL:0000051;7.19e-09;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!8.37e-23!115;UBERON:0001049!1.53e-14!57;UBERON:0005068!1.53e-14!57;UBERON:0006241!1.53e-14!57;UBERON:0007135!1.53e-14!57;UBERON:0002616!5.62e-13!59;UBERON:0000955!1.14e-12!69;UBERON:0006238!1.14e-12!69;UBERON:0001017!1.27e-12!82;UBERON:0003080!5.74e-12!42;UBERON:0002780!1.17e-11!41;UBERON:0001890!1.17e-11!41;UBERON:0006240!1.17e-11!41;UBERON:0005743!4.54e-11!86;UBERON:0000073!7.88e-11!94;UBERON:0001016!7.88e-11!94;UBERON:0001893!5.26e-09!34;UBERON:0002020!5.72e-09!34;UBERON:0003528!5.72e-09!34;UBERON:0002791!7.34e-09!33;UBERON:0001869!2.21e-08!32;UBERON:0002346!1.41e-07!90;UBERON:0002390!2.54e-07!102;UBERON:0003061!2.54e-07!102;UBERON:0003075!3.70e-07!86;UBERON:0007284!3.70e-07!86;UBERON:0002193!5.87e-07!112|ontology_enrichment_uberon_v019=UBERON:0002780;7.93e-09;41!UBERON:0001890;7.93e-09;41!UBERON:0000073;4.10e-08;53!UBERON:0002616;4.10e-08;53!UBERON:0003528;5.29e-08;34!UBERON:0002020;5.29e-08;34!UBERON:0002791;6.01e-08;32!UBERON:0001893;8.24e-08;34!UBERON:0001869;8.33e-08;32!UBERON:0007023;2.67e-07;114|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.13e-22,114;UBERON:0001049,3.17e-14,56;UBERON:0005068,3.17e-14,56;UBERON:0006241,3.17e-14,56;UBERON:0007135,3.17e-14,56;UBERON:0000073,2.62e-13,53;UBERON:0002616,2.62e-13,53;UBERON:0000955,2.26e-12,68;UBERON:0006238,2.26e-12,68;UBERON:0001017,2.48e-12,81;UBERON:0001016,5.57e-12,89;UBERON:0002780,1.17e-11,41;UBERON:0001890,1.17e-11,41;UBERON:0003080,1.17e-11,41;UBERON:0006240,1.17e-11,41;UBERON:0001893,5.26e-09,34;UBERON:0003528,5.72e-09,34;UBERON:0002020,5.72e-09,34;UBERON:0002791,1.68e-08,32;UBERON:0001869,2.21e-08,32;UBERON:0002346,3.48e-08,86;UBERON:0003075,9.30e-08,82;UBERON:0007284,9.30e-08,82;UBERON:0002390,1.20e-07,98;UBERON:0003061,1.20e-07,98;UBERON:0002193,3.06e-07,108|phase1_expression=11.6274162733156,7.27941781229343,10.8534891153898,9.00659685178174,5.81049422755474,11.3404008133048,2.53299878168311,1.89515962028049,4.96252693579693,2.45733936501509,4.18680700783456,12.2327168392896,7.91300934685361,3.46545788288131,7.29074226601415,11.4295274896802,9.04041792035965,8.03341099426111,6.8310591830671,9.48032147191267,13.4640456221207,11.5978246946892,23.4713509447466,20.5311637609326,29.2514350255891,20.8608597691907,16.7485202477889,19.0480090779104,21.6350352266897,47.5948453640544,37.6203179658065,4.59710612239464,5.4217065380085,7.02532619316897,30.4446098280585,27.2964926375849,31.7088474481635,57.6155224873153,43.1170562060805,51.8655981010886,21.7198010012727,33.6849412659739,22.9242255194426,22.8275234883917,20.0274250155069,21.8325655069035,18.1294648786434,18.5025549609822,14.5561994320699,10.6446185159196,13.5765174460423,14.8983804829809,21.0294865249337,24.5284179761854,31.1480919166986,19.0124762938031,13.6453075028923,19.1014961778322,12.2433556948361,18.9348125974895,12.7867425159808,13.5239033076554,20.3452930774064,14.0654167675789,11.3181603065148,6.80862269629368,12.4564449799115,17.3361579027153,23.4667313289091,21.9360733152168,10.8971910474006,14.7311054395026,12.3420331101945,43.9410995528839,42.3082556930437,32.4970900537983,27.1835287374518,33.4894471036559,38.2526896339051,48.7371791797535,73.2013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8984544788115,22.0867539472553,21.282458220105,43.5790988724454,23.0732427196653,31.4828762912814,39.4293609568258,10.1234130449306,9.55389440512381,11.7040786753437,9.41063278792687,20.6067358555028,20.1440229769047,10.5970910049681,12.8542320415973,8.3220879225392,8.33373223210392,12.3268271858762,13.347168323948,7.32288218870155,11.1910883584797,11.1914784419602,8.87130899937804,8.60202542683993,13.4940933649081,13.8184031619871,9.95294898818053,15.9505028734797,14.6088617307285,13.5231848097497,12.5665720015702,13.4267341957538,15.8208333506227,10.0965923619939,15.3131140759903,15.525739659246,11.6008051752315,13.3924325021289,11.7862321068072,30.2843755748762,12.5202889764747,5.78992296712299,5.21988583930423,9.52164887151544,9.95546639592486,13.2157820433492,13.968929604356,1.54400723580486,8.33279388399087,6.5374983999976,8.68113172219117,6.41981274481676,16.1432156710406,10.0174799102048,4.86175929883811,24.6100016350081,16.7579865601874,12.8878895103962,19.6278473107013,7.20741667462108,9.83091635014877,14.7918486351039,15.1990420849747,18.2442857776981,11.3661886576138,11.3503190713367,5.52317850755522,12.8689147101889,10.5753134205605,20.8467825224952,17.2519698234691,12.4240094066158,25.4458456987392,15.1061951659082,44.21558338115,23.9196025019874,16.2007026212241,8.26811311698888,63.2471194910052,11.2079904759966,11.6383061417926,8.57487336588961,25.6916900385838,38.2580756079079,25.0625158719727,17.4348909604642,55.7078448649997,15.9753253192343,25.3516763642006,67.1016275218026,11.1888399091169,14.3923062484243,7.52057253938884,4.96760364446454,12.9669912458837,8.97467903878131,18.8970411010461,21.2093125944905,15.3295852214675,17.9748222583611,9.95245439029405,10.4814027206462,9.75850169032499,23.4355418625829,29.6809677473262,19.2218720746101,21.0540489843771,45.3989091485122,12.061670870858,40.1931054495328,15.8284119923659,7.79350808601531,66.9627294847859,70.9558653881719,74.0498037168691,56.6878856464731,15.5229147784618,10.1405909049086,18.1777290003664,28.8191667821766,20.1922414837947,6.85524277127016,13.5702310308324,24.1758725979583,48.5487172840446,7.28707624615851,50.2237296280223,14.6830762028663,21.9765776428043,46.7456598915333,25.5982051007017,20.1097665886857,8.69291361512897,14.4308045651446,17.4061577896951,25.2663346099046,26.9591268107496,24.9531868115761,12.8981880796316,10.2256085710989,41.0685438685201,30.0129997792706,7.13474687027936,6.68877257284203,9.84327799820572,9.8150233615243,10.3630236234929,19.4228651156368,10.1636178787685,30.1551752147932,38.371168451672,13.33454941734,24.4709453448483,19.027214524411,15.0218289111817,22.3179248993221,17.8136155408675,23.3837699067072,21.4188369293878,6.1141248526998,40.4494730893944,11.0767977137764,35.3355240806901,35.9426144395774,28.7405894756712,11.0452624547081,20.2065423656685,40.6729273113272,16.7901141953881,6.96360360562065,7.05789743431384,9.54872263601102,41.6291741300515,27.5237570042724,30.3879916281077,13.5683543486139,16.3179576458195,47.1258745567608,32.7996641119548,10.0438654905023,7.85698568673411,11.6809171773423,14.1306395815288,9.7246359047689,26.099891208356,16.3182127587171,16.0330443159336,19.6655085004568,15.2931598968349,21.3695928975435,30.8158749679605,46.4334886096916,30.7195997709829,27.7204176471275,44.9941775466469,35.7822560491474,65.6750477250177,12.5587686090287,16.2936725192102,48.1038909720562,23.5134087728718,19.8495314629463,40.0744715436796,19.508439866808,41.5825445682517,15.6294275733071,12.2736447759373,19.307228228694,10.7790242527904,35.1961413605181,58.553651763593,51.268918467783,19.9727032255654,37.0343780207488,12.1816027075229|short_description=p1@NKTR}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=4820 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7833 | |||
|TSSclassifier=S | |||
|UniProt=A8K7K2,P30414,Q6N014 | |||
|association_with_transcript=0bp_to_ENST00000429888,ENST00000460910,ENST00000468735,ENST00000487466,NM_005385,uc003cll.1,uc003clm.1,uc003clo.2,uc003clp.2,uc011azp.1_5end | |||
|coexpression_cluster_id=C2651 | |||
|description=CAGE_peak_1_at_NKTR_5end | |||
|id=chr3:42642138..42642200,+ | |||
|ontology_enrichment_celltype=CL:0000037!5.04e-23!172;CL:0000566!5.04e-23!172;CL:0000738!1.18e-20!140;CL:0002032!5.04e-20!165;CL:0000837!5.04e-20!165;CL:0000988!5.49e-20!182;CL:0002031!3.84e-15!124;CL:0002087!1.30e-14!119;CL:0000838!5.40e-14!52;CL:0000542!7.62e-14!53;CL:0000051!7.62e-14!53;CL:0000791!5.06e-11!18;CL:0000789!5.06e-11!18;CL:0002420!5.06e-11!18;CL:0002419!5.06e-11!18;CL:0000790!5.06e-11!18;CL:0000084!1.30e-09!25;CL:0000827!1.30e-09!25;CL:0000763!3.67e-08!112;CL:0000049!3.67e-08!112;CL:0000625!7.84e-08!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.63e-11;18!CL:0000789;4.63e-11;18!CL:0002419;4.63e-11;18!CL:0000084;9.70e-10;25!CL:0000542;7.19e-09;53!CL:0000625;7.46e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.36e-23,168;CL:0000738,2.69e-21,136;CL:0000988,6.16e-21,177;CL:0002032,1.50e-20,161;CL:0000837,1.50e-20,161;CL:0002031,1.10e-15,120;CL:0002087,3.70e-15,115;CL:0000838,5.40e-14,52;CL:0000542,7.62e-14,53;CL:0000051,7.62e-14,53;CL:0000791,5.06e-11,18;CL:0000789,5.06e-11,18;CL:0002420,5.06e-11,18;CL:0002419,5.06e-11,18;CL:0000790,5.06e-11,18;CL:0000084,1.30e-09,25;CL:0000827,1.30e-09,25;CL:0000763,1.71e-08,108;CL:0000049,1.71e-08,108;CL:0000625,7.84e-08,11 | |||
|ontology_enrichment_development_v019=CL:0000790;4.63e-11;18!CL:0000051;7.19e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0002780;7.93e-09;41!UBERON:0001890;7.93e-09;41!UBERON:0000073;4.10e-08;53!UBERON:0002616;4.10e-08;53!UBERON:0003528;5.29e-08;34!UBERON:0002020;5.29e-08;34!UBERON:0002791;6.01e-08;32!UBERON:0001893;8.24e-08;34!UBERON:0001869;8.33e-08;32!UBERON:0007023;2.67e-07;114 | |||
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| |||
|short_description=p1@NKTR | |||
}} |
Revision as of 00:08, 13 September 2013
Short description: | p1@NKTR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_NKTR_5end |
Coexpression cluster: | C2651_granulocyte_CD4_CD8_Small_CD19_CD34_Natural |
Association with transcript: | 0bp_to_ENST00000429888, ENST00000460910, ENST00000468735, ENST00000487466, NM_005385, uc003cll.1, uc003clm.1, uc003clo.2, uc003clp.2, uc011azp.1_5end |
EntrezGene: | NKTR |
HGNC: | 7833 |
UniProt: | A8K7K2P30414Q6N014 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.36e-23 | 168 |
leukocyte | 2.69e-21 | 136 |
hematopoietic cell | 6.16e-21 | 177 |
hematopoietic oligopotent progenitor cell | 1.50e-20 | 161 |
hematopoietic multipotent progenitor cell | 1.50e-20 | 161 |
hematopoietic lineage restricted progenitor cell | 1.10e-15 | 120 |
nongranular leukocyte | 3.70e-15 | 115 |
lymphoid lineage restricted progenitor cell | 5.40e-14 | 52 |
lymphocyte | 7.62e-14 | 53 |
common lymphoid progenitor | 7.62e-14 | 53 |
mature alpha-beta T cell | 5.06e-11 | 18 |
alpha-beta T cell | 5.06e-11 | 18 |
immature T cell | 5.06e-11 | 18 |
mature T cell | 5.06e-11 | 18 |
immature alpha-beta T cell | 5.06e-11 | 18 |
T cell | 1.30e-09 | 25 |
pro-T cell | 1.30e-09 | 25 |
myeloid cell | 1.71e-08 | 108 |
common myeloid progenitor | 1.71e-08 | 108 |
CD8-positive, alpha-beta T cell | 7.84e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.13e-22 | 114 |
neural tube | 3.17e-14 | 56 |
neural rod | 3.17e-14 | 56 |
future spinal cord | 3.17e-14 | 56 |
neural keel | 3.17e-14 | 56 |
regional part of nervous system | 2.62e-13 | 53 |
regional part of brain | 2.62e-13 | 53 |
brain | 2.26e-12 | 68 |
future brain | 2.26e-12 | 68 |
central nervous system | 2.48e-12 | 81 |
nervous system | 5.57e-12 | 89 |
regional part of forebrain | 1.17e-11 | 41 |
forebrain | 1.17e-11 | 41 |
anterior neural tube | 1.17e-11 | 41 |
future forebrain | 1.17e-11 | 41 |
telencephalon | 5.26e-09 | 34 |
brain grey matter | 5.72e-09 | 34 |
gray matter | 5.72e-09 | 34 |
regional part of telencephalon | 1.68e-08 | 32 |
cerebral hemisphere | 2.21e-08 | 32 |
neurectoderm | 3.48e-08 | 86 |
neural plate | 9.30e-08 | 82 |
presumptive neural plate | 9.30e-08 | 82 |
hematopoietic system | 1.20e-07 | 98 |
blood island | 1.20e-07 | 98 |
hemolymphoid system | 3.06e-07 | 108 |
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