FFCP PHASE1:Hg19::chr3:28333250..28333259,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=152100|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=28783|TSSclassifier=W|UniProt=|association_with_transcript=-32bp_to_ENST00000468330_5end|coexpression_cluster_id=C98|description=CAGE_peak_5_at_CMC1_5end|id=chr3:28333250..28333259,+|ontology_enrichment_celltype=CL:0000625!2.09e-28!11;CL:0000791!2.36e-23!18;CL:0000789!2.36e-23!18;CL:0002420!2.36e-23!18;CL:0002419!2.36e-23!18;CL:0000790!2.36e-23!18;CL:0000084!5.62e-16!25;CL:0000827!5.62e-16!25;CL:0000738!7.45e-12!140;CL:0000838!1.29e-11!52;CL:0000542!2.55e-11!53;CL:0000051!2.55e-11!53;CL:0000767!1.55e-10!3;CL:0000623!3.80e-10!3;CL:0000825!3.80e-10!3;CL:0000094!7.29e-10!8;CL:0000842!7.86e-10!3;CL:0002087!1.69e-09!119;CL:0000037!2.63e-08!172;CL:0000566!2.63e-08!172;CL:0000988!1.80e-07!182;CL:0000224!1.83e-07!4;CL:0000081!4.70e-07!11;CL:0000893!9.27e-07!2;CL:0002489!9.27e-07!2;CL:0000809!9.27e-07!2;CL:0000808!9.27e-07!2;CL:0000894!9.27e-07!2;CL:0000806!9.27e-07!2;CL:0000807!9.27e-07!2;CL:0000805!9.27e-07!2;CL:0002425!9.27e-07!2|ontology_enrichment_celltype_v019=CL:0000625;4.57e-67;11!CL:0000791;2.16e-40;18!CL:0000789;2.16e-40;18!CL:0002419;2.16e-40;18!CL:0000084;1.22e-28;25!CL:0000767;6.54e-23;3!CL:0000094;5.77e-15;8!CL:0000623;5.98e-11;3!CL:0000081;6.18e-11;11!CL:0000542;1.91e-09;53|ontology_enrichment_celltype_v019_2=CL:0000625,6.93e-67,11;CL:0000791,2.77e-40,18;CL:0000789,2.77e-40,18;CL:0002420,2.77e-40,18;CL:0002419,2.77e-40,18;CL:0000790,2.77e-40,18;CL:0000084,1.46e-28,25;CL:0000827,1.46e-28,25;CL:0000767,4.50e-23,3;CL:0000838,1.01e-18,52;CL:0000542,2.51e-18,53;CL:0000051,2.51e-18,53;CL:0000094,4.98e-15,8;CL:0000738,1.49e-12,136;CL:0000623,5.41e-11,3;CL:0000825,5.41e-11,3;CL:0000081,5.57e-11,11;CL:0000037,1.45e-09,168;CL:0000988,6.41e-09,177;CL:0002032,8.05e-09,161;CL:0000837,8.05e-09,161;CL:0002087,1.53e-08,115;CL:0002031,7.99e-07,120|ontology_enrichment_development_v019=CL:0000790;2.16e-40;18!CL:0000051;1.91e-09;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000178!3.63e-23!15;UBERON:0000179!3.63e-23!15;UBERON:0000463!3.63e-23!15;UBERON:0004177!5.38e-14!7;UBERON:0007023!2.01e-11!115;UBERON:0002370!3.01e-11!4;UBERON:0005058!3.01e-11!4;UBERON:0009113!3.01e-11!4;UBERON:0003295!3.01e-11!4;UBERON:0005562!3.01e-11!4;UBERON:0002193!5.67e-10!112;UBERON:0002390!2.36e-09!102;UBERON:0003061!2.36e-09!102;UBERON:0003351!1.60e-07!6;UBERON:0001042!9.07e-07!10;UBERON:0009145!9.07e-07!10|ontology_enrichment_uberon_v019=UBERON:0000178;2.98e-23;15!UBERON:0000179;2.98e-23;15!UBERON:0000463;2.98e-23;15!UBERON:0002390;1.14e-10;32!UBERON:0002171;1.65e-08;1!UBERON:0006518;1.65e-08;1!UBERON:0008949;1.65e-08;1!UBERON:0000101;1.65e-08;1!UBERON:0002167;1.65e-08;1!UBERON:0002193;3.12e-07;42|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.08e-23,15;UBERON:0000179,3.08e-23,15;UBERON:0000463,3.08e-23,15;UBERON:0002171,1.65e-08,1;UBERON:0006518,1.65e-08,1;UBERON:0008949,1.65e-08,1;UBERON:0000101,1.65e-08,1;UBERON:0002167,1.65e-08,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,3.14691421479123,3.83829398097213,1.85779347979291,0,0,0,0,0,0,0.553995408531877,0,0.217010870715852,0.447830948479849,0.971680998056939,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0.383220493601921,1.71813722741315,2.02415753615602,7.00843911513013,14.3238359848412,9.50452044448374,3.46322773878877,4.47953139040464,0,8.05042656949657,4.10563998460523,2.41928091869679,1.06976078313403,1.15859523106239,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448340575974109,3.34952292343276,0.431255149719035,2.69520376187472,0,0,0,0,0,0,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,0.647142602455851,1.17400313583789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,3.04468565539302,3.0585488285695,1.70894156152249,0.476463550915578,0.822724546172388,1.94541993357815,3.7802200606668,2.37937552888281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.41981432097328,0,0.126373159256976,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=152100 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28783 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-32bp_to_ENST00000468330_5end | |||
|coexpression_cluster_id=C98 | |||
|description=CAGE_peak_5_at_CMC1_5end | |||
|id=chr3:28333250..28333259,+ | |||
|ontology_enrichment_celltype=CL:0000625!2.09e-28!11;CL:0000791!2.36e-23!18;CL:0000789!2.36e-23!18;CL:0002420!2.36e-23!18;CL:0002419!2.36e-23!18;CL:0000790!2.36e-23!18;CL:0000084!5.62e-16!25;CL:0000827!5.62e-16!25;CL:0000738!7.45e-12!140;CL:0000838!1.29e-11!52;CL:0000542!2.55e-11!53;CL:0000051!2.55e-11!53;CL:0000767!1.55e-10!3;CL:0000623!3.80e-10!3;CL:0000825!3.80e-10!3;CL:0000094!7.29e-10!8;CL:0000842!7.86e-10!3;CL:0002087!1.69e-09!119;CL:0000037!2.63e-08!172;CL:0000566!2.63e-08!172;CL:0000988!1.80e-07!182;CL:0000224!1.83e-07!4;CL:0000081!4.70e-07!11;CL:0000893!9.27e-07!2;CL:0002489!9.27e-07!2;CL:0000809!9.27e-07!2;CL:0000808!9.27e-07!2;CL:0000894!9.27e-07!2;CL:0000806!9.27e-07!2;CL:0000807!9.27e-07!2;CL:0000805!9.27e-07!2;CL:0002425!9.27e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000625;4.57e-67;11!CL:0000791;2.16e-40;18!CL:0000789;2.16e-40;18!CL:0002419;2.16e-40;18!CL:0000084;1.22e-28;25!CL:0000767;6.54e-23;3!CL:0000094;5.77e-15;8!CL:0000623;5.98e-11;3!CL:0000081;6.18e-11;11!CL:0000542;1.91e-09;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000625,6.93e-67,11;CL:0000791,2.77e-40,18;CL:0000789,2.77e-40,18;CL:0002420,2.77e-40,18;CL:0002419,2.77e-40,18;CL:0000790,2.77e-40,18;CL:0000084,1.46e-28,25;CL:0000827,1.46e-28,25;CL:0000767,4.50e-23,3;CL:0000838,1.01e-18,52;CL:0000542,2.51e-18,53;CL:0000051,2.51e-18,53;CL:0000094,4.98e-15,8;CL:0000738,1.49e-12,136;CL:0000623,5.41e-11,3;CL:0000825,5.41e-11,3;CL:0000081,5.57e-11,11;CL:0000037,1.45e-09,168;CL:0000988,6.41e-09,177;CL:0002032,8.05e-09,161;CL:0000837,8.05e-09,161;CL:0002087,1.53e-08,115;CL:0002031,7.99e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000790;2.16e-40;18!CL:0000051;1.91e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.63e-23!15;UBERON:0000179!3.63e-23!15;UBERON:0000463!3.63e-23!15;UBERON:0004177!5.38e-14!7;UBERON:0007023!2.01e-11!115;UBERON:0002370!3.01e-11!4;UBERON:0005058!3.01e-11!4;UBERON:0009113!3.01e-11!4;UBERON:0003295!3.01e-11!4;UBERON:0005562!3.01e-11!4;UBERON:0002193!5.67e-10!112;UBERON:0002390!2.36e-09!102;UBERON:0003061!2.36e-09!102;UBERON:0003351!1.60e-07!6;UBERON:0001042!9.07e-07!10;UBERON:0009145!9.07e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.98e-23;15!UBERON:0000179;2.98e-23;15!UBERON:0000463;2.98e-23;15!UBERON:0002390;1.14e-10;32!UBERON:0002171;1.65e-08;1!UBERON:0006518;1.65e-08;1!UBERON:0008949;1.65e-08;1!UBERON:0000101;1.65e-08;1!UBERON:0002167;1.65e-08;1!UBERON:0002193;3.12e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.08e-23,15;UBERON:0000179,3.08e-23,15;UBERON:0000463,3.08e-23,15;UBERON:0002171,1.65e-08,1;UBERON:0006518,1.65e-08,1;UBERON:0008949,1.65e-08,1;UBERON:0000101,1.65e-08,1;UBERON:0002167,1.65e-08,1 | |||
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|short_description=p5@CMC1 | |||
}} |
Revision as of 23:46, 12 September 2013
Short description: | p5@CMC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_CMC1_5end |
Coexpression cluster: | C98_CD8_Natural_Basophils_blood_CD4_Peripheral_Whole |
Association with transcript: | -32bp_to_ENST00000468330_5end |
EntrezGene: | CMC1 |
HGNC: | 28783 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 6.93e-67 | 11 |
mature alpha-beta T cell | 2.77e-40 | 18 |
alpha-beta T cell | 2.77e-40 | 18 |
immature T cell | 2.77e-40 | 18 |
mature T cell | 2.77e-40 | 18 |
immature alpha-beta T cell | 2.77e-40 | 18 |
T cell | 1.46e-28 | 25 |
pro-T cell | 1.46e-28 | 25 |
basophil | 4.50e-23 | 3 |
lymphoid lineage restricted progenitor cell | 1.01e-18 | 52 |
lymphocyte | 2.51e-18 | 53 |
common lymphoid progenitor | 2.51e-18 | 53 |
granulocyte | 4.98e-15 | 8 |
leukocyte | 1.49e-12 | 136 |
natural killer cell | 5.41e-11 | 3 |
pro-NK cell | 5.41e-11 | 3 |
blood cell | 5.57e-11 | 11 |
hematopoietic stem cell | 1.45e-09 | 168 |
hematopoietic cell | 6.41e-09 | 177 |
hematopoietic oligopotent progenitor cell | 8.05e-09 | 161 |
hematopoietic multipotent progenitor cell | 8.05e-09 | 161 |
nongranular leukocyte | 1.53e-08 | 115 |
hematopoietic lineage restricted progenitor cell | 7.99e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
blood | 3.08e-23 | 15 |
haemolymphatic fluid | 3.08e-23 | 15 |
organism substance | 3.08e-23 | 15 |
lower lobe of right lung | 1.65e-08 | 1 |
right lung lobe | 1.65e-08 | 1 |
lower lobe of lung | 1.65e-08 | 1 |
lobe of lung | 1.65e-08 | 1 |
right lung | 1.65e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.