FFCP PHASE1:Hg19::chr3:19988885..19988899,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5868|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9783|TSSclassifier=S|UniProt=B4DJA5,F8WD79|association_with_transcript=0bp_to_ENST00000422242,ENST00000446547_5end|coexpression_cluster_id=C26|description=CAGE_peak_5_at_RAB5A_5end|id=chr3:19988885..19988899,+|ontology_enrichment_celltype=CL:0000766!2.19e-20!76;CL:0002057!4.97e-19!42;CL:0000860!1.02e-17!45;CL:0000557!2.13e-17!71;CL:0000839!9.56e-17!70;CL:0002009!1.34e-16!65;CL:0002194!1.80e-15!63;CL:0000576!1.80e-15!63;CL:0000040!1.80e-15!63;CL:0000559!1.80e-15!63;CL:0000763!1.59e-12!112;CL:0000049!1.59e-12!112;CL:0000738!7.65e-10!140;CL:0002031!3.29e-08!124;CL:0002087!9.56e-07!119;CL:0002032!9.67e-07!165;CL:0000837!9.67e-07!165|ontology_enrichment_celltype_v019=CL:0000860;1.80e-19;33!CL:0002057;1.80e-19;33!CL:0000473;1.32e-15;39!CL:0000234;1.32e-15;39!CL:0000576;1.28e-12;48!CL:0000766;1.62e-10;69|ontology_enrichment_celltype_v019_2=CL:0000766,1.04e-24,72;CL:0000557,3.97e-21,67;CL:0000860,2.05e-20,42;CL:0002057,2.05e-20,42;CL:0000473,2.29e-20,48;CL:0000234,2.29e-20,48;CL:0000839,2.43e-20,66;CL:0002009,2.99e-20,61;CL:0002194,6.86e-19,59;CL:0000576,6.86e-19,59;CL:0000040,6.86e-19,59;CL:0000559,6.86e-19,59;CL:0000763,9.74e-14,108;CL:0000049,9.74e-14,108;CL:0000738,8.15e-12,136;CL:0002031,3.59e-10,120;CL:0002087,3.60e-08,115;CL:0002032,2.10e-07,161;CL:0000837,2.10e-07,161;CL:0000037,3.81e-07,168;CL:0000094,8.05e-07,8|ontology_enrichment_development_v019=CL:0002057;6.67e-16;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!9.80e-16!80;UBERON:0004765!1.04e-13!101;UBERON:0001434!1.04e-13!101;UBERON:0001474!1.78e-13!86;UBERON:0002390!2.08e-10!102;UBERON:0003061!2.08e-10!102;UBERON:0002193!2.92e-10!112;UBERON:0002405!3.34e-09!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.44e-18,76;UBERON:0001474,4.70e-16,82;UBERON:0004765,1.52e-15,90;UBERON:0001434,1.13e-14,100;UBERON:0002405,2.09e-14,93;UBERON:0002390,5.96e-12,98;UBERON:0003061,5.96e-12,98;UBERON:0002193,8.42e-12,108;UBERON:0002780,8.36e-07,41;UBERON:0001890,8.36e-07,41;UBERON:0003080,8.36e-07,41;UBERON:0006240,8.36e-07,41|phase1_expression=1.45342703416445,1.2846031433459,1.40954404095971,0,0.893922188854576,0.872338524100369,0,0.631719873426831,0.261185628199839,0.245733936501509,0.697801167972428,0.436882744260345,2.11013582582763,0.495065411840187,0.994192127183747,0,0.602694528023977,0.730310090387373,0.975865597581014,0.369363174230364,0.204000691244253,0.626909442956176,0.286235987131057,1.09499540058307,1.25542639594803,0.61130724598361,0.164201178899891,0.393553906568396,2.75354993794233,1.91914699048606,2.94150634300544,0.919421224478927,0.30120591877825,1.10926203050036,0.232401601740905,0.853015394924529,0.880801318004542,2.21598163412751,2.4065333696417,2.82114131930607,1.79132379391939,1.29557466407592,1.28787783817093,3.19876125315042,4.53451132426571,4.85168122375632,5.57829688573643,5.75635043230556,7.43295290148249,4.89077066947656,6.14785695669842,8.98632473576624,4.82643953031266,8.39130088658974,2.70852973188684,5.83551252582075,5.18521685109907,8.31476892446813,12.549439587207,11.5534449747394,8.95071976118658,3.62836430205388,4.58766412529753,2.98357325372886,11.3181603065148,8.5107783703671,13.0792672289071,4.77372463987812,4.17186334736161,4.56096573880745,8.47559303686716,12.1531619875896,11.3926459478718,0.845021145247767,1.06302149982522,2.09658645508376,0.673971786878971,1.35159203557356,0.964353520182481,1.14005097496499,1.79025009479181,0.730656615058536,1.75996244461323,0,0.889509253863555,1.28019066769952,1.20118796110804,0.574752439954483,1.32208974556972,0.954053754535364,0,2.34894875748376,1.52909291250092,2.64342657158052,2.80254281490768,0.790152254325231,2.16380747125216,0.393010762749165,1.23360899399706,1.17030546773475,2.28145586643513,0.473447805734733,0,1.00269411196656,1.76763544484902,0.886135578334485,0,1.5370958367081,1.43065282315866,1.64437904603676,0.552700035571697,1.44901542867526,1.33457906845854,1.07016331235885,2.09071047609954,1.24640276967323,1.14966148080576,1.71813722741315,0.759059076058509,0.637130828648193,0,0.950452044448374,0.301150238155546,0.76791966692651,0,0.236777252044017,1.64225599384209,1.20964045934839,1.60464117470104,0.868946423296794,0,0.670700859703636,1.02290049474824,0,0.50133791063589,0.724232594804119,2.3858578411533,0,0.756278537312543,0.665188192387692,1.58102614247627,1.24430121722827,0,0.370784442784429,1.62273696827342,2.61194605948901,2.39324328933957,1.19245312152671,1.14398982156026,0.74291500265913,0.596287222100115,1.72046919021225,1.38856200643038,3.39184765154406,1.25849830862972,2.20094433552054,1.04497483268405,0.775250277507987,1.77883131343355,2.67776490211736,1.20848795132744,0.760272105718513,0.976248230192678,0.367663080345869,2.43042584364528,0.982297011124877,0.898117490504679,0.900891843866578,1.53316637465883,0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591660003652827,0.596493833314104,1.27016115057279,2.7492824225286,0.31020638566432,1.91107787795487,0.559277158988962,0.687051635306701,2.56027642462766,0,0.307988420568741,1.1598144313382,0.971421986118279,2.33939463462106,0.596852325484105,0.594600453887843,0.90356865631168,0,1.66059127923341,0.694567422971502,0.874238242015829,2.82190377816914,0.490296643507811,0,1.96308467114945,0.891139200981258,2.5359343655004,1.0195626881269,0.939839179798536,0.837952543656503,0.499705779624645,1.07132363163395,0.705789743431384,0.240724100067505,0.730336388246517,0.458729283404541,1.43339583151451,0.788857810965923,1.76777874496378,1.30905207102113,1.0580536810308,1.11598505450025,0.924351257262837,2.59575937274273,0.252332849670158,0.874124575709564,0.380095503034311,0.509944148709909,0.801652215796681,1.74600309116205,1.25353769646188,0.378893491091197,1.07185652062471,2.48750831837634,1.86179392551411,0.852935927603924,1.1903221573187,0.387533459016037,0.558672428662721,0.672791175483681,0.827413057616144,0.202117188958219,1.52401723527873,2.39563310759697,1.14498490124799,0.932388670104793,0.99798106963804,0.244209805832924,0.426909383510862,0,2.33545525477126,2.34640942403454,0.611207220914332,0.406896178315738,0,1.20764276154616,0.961705476909699|short_description=p5@RAB5A}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=5868 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9783 | |||
|TSSclassifier=S | |||
|UniProt=B4DJA5,F8WD79 | |||
|association_with_transcript=0bp_to_ENST00000422242,ENST00000446547_5end | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_5_at_RAB5A_5end | |||
|id=chr3:19988885..19988899,+ | |||
|ontology_enrichment_celltype=CL:0000766!2.19e-20!76;CL:0002057!4.97e-19!42;CL:0000860!1.02e-17!45;CL:0000557!2.13e-17!71;CL:0000839!9.56e-17!70;CL:0002009!1.34e-16!65;CL:0002194!1.80e-15!63;CL:0000576!1.80e-15!63;CL:0000040!1.80e-15!63;CL:0000559!1.80e-15!63;CL:0000763!1.59e-12!112;CL:0000049!1.59e-12!112;CL:0000738!7.65e-10!140;CL:0002031!3.29e-08!124;CL:0002087!9.56e-07!119;CL:0002032!9.67e-07!165;CL:0000837!9.67e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.80e-19;33!CL:0002057;1.80e-19;33!CL:0000473;1.32e-15;39!CL:0000234;1.32e-15;39!CL:0000576;1.28e-12;48!CL:0000766;1.62e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.04e-24,72;CL:0000557,3.97e-21,67;CL:0000860,2.05e-20,42;CL:0002057,2.05e-20,42;CL:0000473,2.29e-20,48;CL:0000234,2.29e-20,48;CL:0000839,2.43e-20,66;CL:0002009,2.99e-20,61;CL:0002194,6.86e-19,59;CL:0000576,6.86e-19,59;CL:0000040,6.86e-19,59;CL:0000559,6.86e-19,59;CL:0000763,9.74e-14,108;CL:0000049,9.74e-14,108;CL:0000738,8.15e-12,136;CL:0002031,3.59e-10,120;CL:0002087,3.60e-08,115;CL:0002032,2.10e-07,161;CL:0000837,2.10e-07,161;CL:0000037,3.81e-07,168;CL:0000094,8.05e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;6.67e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!9.80e-16!80;UBERON:0004765!1.04e-13!101;UBERON:0001434!1.04e-13!101;UBERON:0001474!1.78e-13!86;UBERON:0002390!2.08e-10!102;UBERON:0003061!2.08e-10!102;UBERON:0002193!2.92e-10!112;UBERON:0002405!3.34e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.44e-18,76;UBERON:0001474,4.70e-16,82;UBERON:0004765,1.52e-15,90;UBERON:0001434,1.13e-14,100;UBERON:0002405,2.09e-14,93;UBERON:0002390,5.96e-12,98;UBERON:0003061,5.96e-12,98;UBERON:0002193,8.42e-12,108;UBERON:0002780,8.36e-07,41;UBERON:0001890,8.36e-07,41;UBERON:0003080,8.36e-07,41;UBERON:0006240,8.36e-07,41 | |||
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| |||
|short_description=p5@RAB5A | |||
}} |
Revision as of 23:38, 12 September 2013
Short description: | p5@RAB5A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_RAB5A_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000422242, ENST00000446547_5end |
EntrezGene: | RAB5A |
HGNC: | 9783 |
UniProt: | B4DJA5F8WD79 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.04e-24 | 72 |
granulocyte monocyte progenitor cell | 3.97e-21 | 67 |
classical monocyte | 2.05e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.05e-20 | 42 |
defensive cell | 2.29e-20 | 48 |
phagocyte | 2.29e-20 | 48 |
myeloid lineage restricted progenitor cell | 2.43e-20 | 66 |
macrophage dendritic cell progenitor | 2.99e-20 | 61 |
monopoietic cell | 6.86e-19 | 59 |
monocyte | 6.86e-19 | 59 |
monoblast | 6.86e-19 | 59 |
promonocyte | 6.86e-19 | 59 |
myeloid cell | 9.74e-14 | 108 |
common myeloid progenitor | 9.74e-14 | 108 |
leukocyte | 8.15e-12 | 136 |
hematopoietic lineage restricted progenitor cell | 3.59e-10 | 120 |
nongranular leukocyte | 3.60e-08 | 115 |
hematopoietic oligopotent progenitor cell | 2.10e-07 | 161 |
hematopoietic multipotent progenitor cell | 2.10e-07 | 161 |
hematopoietic stem cell | 3.81e-07 | 168 |
granulocyte | 8.05e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.44e-18 | 76 |
bone element | 4.70e-16 | 82 |
skeletal element | 1.52e-15 | 90 |
skeletal system | 1.13e-14 | 100 |
immune system | 2.09e-14 | 93 |
hematopoietic system | 5.96e-12 | 98 |
blood island | 5.96e-12 | 98 |
hemolymphoid system | 8.42e-12 | 108 |
regional part of forebrain | 8.36e-07 | 41 |
forebrain | 8.36e-07 | 41 |
anterior neural tube | 8.36e-07 | 41 |
future forebrain | 8.36e-07 | 41 |
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