FFCP PHASE1:Hg19::chr3:18486486..18486500,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=-15bp_to_ENST00000414198_5end|coexpression_cluster_id=C712|description=CAGE_peak_1_at_ENST00000414198_5end|id=chr3:18486486..18486500,+|ontology_enrichment_celltype=CL:0000037!4.43e-23!172;CL:0000566!4.43e-23!172;CL:0000988!2.04e-21!182;CL:0002032!8.40e-20!165;CL:0000837!8.40e-20!165;CL:0000738!5.69e-19!140;CL:0002087!1.13e-16!119;CL:0000838!1.64e-16!52;CL:0000084!3.60e-16!25;CL:0000827!3.60e-16!25;CL:0000542!6.81e-16!53;CL:0000051!6.81e-16!53;CL:0000791!1.32e-15!18;CL:0000789!1.32e-15!18;CL:0002420!1.32e-15!18;CL:0002419!1.32e-15!18;CL:0000790!1.32e-15!18;CL:0002031!1.38e-14!124;CL:0000625!1.07e-10!11;CL:0000763!5.09e-07!112;CL:0000049!5.09e-07!112|ontology_enrichment_celltype_v019=CL:0000791;1.57e-24;18!CL:0000789;1.57e-24;18!CL:0002419;1.57e-24;18!CL:0000084;1.73e-24;25!CL:0000625;1.54e-16;11!CL:0000542;3.26e-14;53!CL:0000624;6.57e-09;6!CL:0000236;1.23e-07;13|ontology_enrichment_celltype_v019_2=CL:0000791,1.14e-24,18;CL:0000789,1.14e-24,18;CL:0002420,1.14e-24,18;CL:0002419,1.14e-24,18;CL:0000790,1.14e-24,18;CL:0000084,1.26e-24,25;CL:0000827,1.26e-24,25;CL:0000838,2.37e-24,52;CL:0000542,1.14e-23,53;CL:0000051,1.14e-23,53;CL:0000037,8.51e-22,168;CL:0000988,1.23e-19,177;CL:0002032,4.11e-18,161;CL:0000837,4.11e-18,161;CL:0000625,1.40e-16,11;CL:0000738,2.78e-16,136;CL:0002087,8.38e-16,115;CL:0002031,5.78e-12,120;CL:0000624,5.21e-09,6;CL:0000236,7.13e-07,14|ontology_enrichment_development_v019=CL:0000790;1.57e-24;18!CL:0000051;3.26e-14;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:8692;2.28e-07;31|ontology_enrichment_disease_v019_2=DOID:1240,7.43e-08,39;DOID:8692,1.63e-07,31;DOID:2531,5.31e-07,51;DOID:0060083,5.31e-07,51|ontology_enrichment_uberon=UBERON:0007023!2.55e-21!115;UBERON:0001049!1.21e-15!57;UBERON:0005068!1.21e-15!57;UBERON:0006241!1.21e-15!57;UBERON:0007135!1.21e-15!57;UBERON:0003080!1.77e-15!42;UBERON:0002780!3.78e-15!41;UBERON:0001890!3.78e-15!41;UBERON:0006240!3.78e-15!41;UBERON:0001893!1.52e-14!34;UBERON:0002020!2.27e-14!34;UBERON:0003528!2.27e-14!34;UBERON:0001869!3.33e-14!32;UBERON:0001017!4.01e-14!82;UBERON:0002791!5.53e-14!33;UBERON:0002619!6.06e-14!22;UBERON:0005743!8.74e-14!86;UBERON:0001950!2.64e-13!20;UBERON:0000073!5.87e-13!94;UBERON:0001016!5.87e-13!94;UBERON:0000956!3.22e-12!25;UBERON:0000203!3.22e-12!25;UBERON:0002616!3.45e-12!59;UBERON:0000955!5.88e-12!69;UBERON:0006238!5.88e-12!69;UBERON:0000178!8.55e-10!15;UBERON:0000179!8.55e-10!15;UBERON:0000463!8.55e-10!15;UBERON:0002390!1.03e-08!102;UBERON:0003061!1.03e-08!102;UBERON:0003056!2.52e-08!61;UBERON:0002193!1.26e-07!112;UBERON:0002346!1.33e-07!90;UBERON:0003075!1.58e-07!86;UBERON:0007284!1.58e-07!86|ontology_enrichment_uberon_v019=UBERON:0001950;6.26e-19;20!UBERON:0002619;9.03e-17;22!UBERON:0000956;3.59e-14;25!UBERON:0000203;3.59e-14;25!UBERON:0001869;2.97e-11;32!UBERON:0000178;3.57e-11;15!UBERON:0000179;3.57e-11;15!UBERON:0000463;3.57e-11;15!UBERON:0001893;3.88e-10;34!UBERON:0002791;6.06e-10;32!UBERON:0003528;3.22e-09;34!UBERON:0002020;3.22e-09;34!UBERON:0002390;2.66e-08;32!UBERON:0002780;3.00e-08;41!UBERON:0001890;3.00e-08;41!UBERON:0000200;5.23e-07;6!UBERON:0002021;9.90e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0001950,2.25e-19,20;UBERON:0002619,3.61e-17,22;UBERON:0000956,1.63e-14,25;UBERON:0000203,1.63e-14,25;UBERON:0001869,1.04e-12,32;UBERON:0002780,6.33e-12,41;UBERON:0001890,6.33e-12,41;UBERON:0003080,6.33e-12,41;UBERON:0006240,6.33e-12,41;UBERON:0001893,1.24e-11,34;UBERON:0002791,2.23e-11,32;UBERON:0000178,4.46e-11,15;UBERON:0000179,4.46e-11,15;UBERON:0000463,4.46e-11,15;UBERON:0003528,2.10e-10,34;UBERON:0002020,2.10e-10,34;UBERON:0000073,7.88e-08,53;UBERON:0002616,7.88e-08,53;UBERON:0001049,4.23e-07,56;UBERON:0005068,4.23e-07,56;UBERON:0006241,4.23e-07,56;UBERON:0007135,4.23e-07,56;UBERON:0000200,6.02e-07,6;UBERON:0002021,9.09e-07,5|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,1.18009283054671,1.53531759238885,1.85779347979291,0,0,0,0.232401601740905,0,4.9912074686924,1.10799081706375,1.20326668482085,2.60413044859022,0,0.647787332037959,0.515151135268373,0.872389432677388,0,0.242584061187816,0.232429036905685,0.822335776043652,0,0,0.512321413058201,0.236482229888585,1.72372840368309,0,0,0.941211697713023,2.18324920046277,0.898893937780338,1.22433556948361,2.24650318953266,0.639337125799041,0,0.199463657621632,0.426224750532694,0.870627715885752,0.56738522469114,0,0.502497330513487,0,0,0.605399502633369,1.10483290796269,0.316462387440884,0,0,0.209658645508376,0,0,0,0,0.59675003159727,0,0,1.09227722252426,6.22656477704488,1.28019066769952,1.20118796110804,1.72425731986345,2.64417949113945,1.90810750907073,2.27685187643779,4.11066032559657,0.764546456250458,3.96513985737078,2.80254281490768,2.37045676297569,9.83548850569165,9.43225830597995,5.34563897398724,7.02183280640848,7.17028986593899,5.68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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-15bp_to_ENST00000414198_5end | |||
|coexpression_cluster_id=C712 | |||
|description=CAGE_peak_1_at_ENST00000414198_5end | |||
|id=chr3:18486486..18486500,+ | |||
|ontology_enrichment_celltype=CL:0000037!4.43e-23!172;CL:0000566!4.43e-23!172;CL:0000988!2.04e-21!182;CL:0002032!8.40e-20!165;CL:0000837!8.40e-20!165;CL:0000738!5.69e-19!140;CL:0002087!1.13e-16!119;CL:0000838!1.64e-16!52;CL:0000084!3.60e-16!25;CL:0000827!3.60e-16!25;CL:0000542!6.81e-16!53;CL:0000051!6.81e-16!53;CL:0000791!1.32e-15!18;CL:0000789!1.32e-15!18;CL:0002420!1.32e-15!18;CL:0002419!1.32e-15!18;CL:0000790!1.32e-15!18;CL:0002031!1.38e-14!124;CL:0000625!1.07e-10!11;CL:0000763!5.09e-07!112;CL:0000049!5.09e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.57e-24;18!CL:0000789;1.57e-24;18!CL:0002419;1.57e-24;18!CL:0000084;1.73e-24;25!CL:0000625;1.54e-16;11!CL:0000542;3.26e-14;53!CL:0000624;6.57e-09;6!CL:0000236;1.23e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.14e-24,18;CL:0000789,1.14e-24,18;CL:0002420,1.14e-24,18;CL:0002419,1.14e-24,18;CL:0000790,1.14e-24,18;CL:0000084,1.26e-24,25;CL:0000827,1.26e-24,25;CL:0000838,2.37e-24,52;CL:0000542,1.14e-23,53;CL:0000051,1.14e-23,53;CL:0000037,8.51e-22,168;CL:0000988,1.23e-19,177;CL:0002032,4.11e-18,161;CL:0000837,4.11e-18,161;CL:0000625,1.40e-16,11;CL:0000738,2.78e-16,136;CL:0002087,8.38e-16,115;CL:0002031,5.78e-12,120;CL:0000624,5.21e-09,6;CL:0000236,7.13e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000790;1.57e-24;18!CL:0000051;3.26e-14;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:8692;2.28e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,7.43e-08,39;DOID:8692,1.63e-07,31;DOID:2531,5.31e-07,51;DOID:0060083,5.31e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.55e-21!115;UBERON:0001049!1.21e-15!57;UBERON:0005068!1.21e-15!57;UBERON:0006241!1.21e-15!57;UBERON:0007135!1.21e-15!57;UBERON:0003080!1.77e-15!42;UBERON:0002780!3.78e-15!41;UBERON:0001890!3.78e-15!41;UBERON:0006240!3.78e-15!41;UBERON:0001893!1.52e-14!34;UBERON:0002020!2.27e-14!34;UBERON:0003528!2.27e-14!34;UBERON:0001869!3.33e-14!32;UBERON:0001017!4.01e-14!82;UBERON:0002791!5.53e-14!33;UBERON:0002619!6.06e-14!22;UBERON:0005743!8.74e-14!86;UBERON:0001950!2.64e-13!20;UBERON:0000073!5.87e-13!94;UBERON:0001016!5.87e-13!94;UBERON:0000956!3.22e-12!25;UBERON:0000203!3.22e-12!25;UBERON:0002616!3.45e-12!59;UBERON:0000955!5.88e-12!69;UBERON:0006238!5.88e-12!69;UBERON:0000178!8.55e-10!15;UBERON:0000179!8.55e-10!15;UBERON:0000463!8.55e-10!15;UBERON:0002390!1.03e-08!102;UBERON:0003061!1.03e-08!102;UBERON:0003056!2.52e-08!61;UBERON:0002193!1.26e-07!112;UBERON:0002346!1.33e-07!90;UBERON:0003075!1.58e-07!86;UBERON:0007284!1.58e-07!86 | |||
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| |||
|short_description=p1@ENST00000414198 | |||
}} |
Revision as of 23:06, 12 September 2013
Short description: | p1@ENST00000414198 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENST00000414198_5end |
Coexpression cluster: | C712_thymus_biphenotypic_CD4_non_granulocyte_merkel_acute |
Association with transcript: | -15bp_to_ENST00000414198_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.14e-24 | 18 |
alpha-beta T cell | 1.14e-24 | 18 |
immature T cell | 1.14e-24 | 18 |
mature T cell | 1.14e-24 | 18 |
immature alpha-beta T cell | 1.14e-24 | 18 |
T cell | 1.26e-24 | 25 |
pro-T cell | 1.26e-24 | 25 |
lymphoid lineage restricted progenitor cell | 2.37e-24 | 52 |
lymphocyte | 1.14e-23 | 53 |
common lymphoid progenitor | 1.14e-23 | 53 |
hematopoietic stem cell | 8.51e-22 | 168 |
hematopoietic cell | 1.23e-19 | 177 |
hematopoietic oligopotent progenitor cell | 4.11e-18 | 161 |
hematopoietic multipotent progenitor cell | 4.11e-18 | 161 |
CD8-positive, alpha-beta T cell | 1.40e-16 | 11 |
leukocyte | 2.78e-16 | 136 |
nongranular leukocyte | 8.38e-16 | 115 |
hematopoietic lineage restricted progenitor cell | 5.78e-12 | 120 |
CD4-positive, alpha-beta T cell | 5.21e-09 | 6 |
B cell | 7.13e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
neocortex | 2.25e-19 | 20 |
regional part of cerebral cortex | 3.61e-17 | 22 |
cerebral cortex | 1.63e-14 | 25 |
pallium | 1.63e-14 | 25 |
cerebral hemisphere | 1.04e-12 | 32 |
regional part of forebrain | 6.33e-12 | 41 |
forebrain | 6.33e-12 | 41 |
anterior neural tube | 6.33e-12 | 41 |
future forebrain | 6.33e-12 | 41 |
telencephalon | 1.24e-11 | 34 |
regional part of telencephalon | 2.23e-11 | 32 |
blood | 4.46e-11 | 15 |
haemolymphatic fluid | 4.46e-11 | 15 |
organism substance | 4.46e-11 | 15 |
brain grey matter | 2.10e-10 | 34 |
gray matter | 2.10e-10 | 34 |
regional part of nervous system | 7.88e-08 | 53 |
regional part of brain | 7.88e-08 | 53 |
neural tube | 4.23e-07 | 56 |
neural rod | 4.23e-07 | 56 |
future spinal cord | 4.23e-07 | 56 |
neural keel | 4.23e-07 | 56 |
gyrus | 6.02e-07 | 6 |
occipital lobe | 9.09e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
leukemia | 7.43e-08 | 39 |
myeloid leukemia | 1.63e-07 | 31 |
hematologic cancer | 5.31e-07 | 51 |
immune system cancer | 5.31e-07 | 51 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.