FFCP PHASE1:Hg19::chr20:62009349..62009358,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1137|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1958|TSSclassifier=S|UniProt=|association_with_transcript=-4bp_to_ENST00000463705_5end|coexpression_cluster_id=C1259|description=CAGE_peak_10_at_CHRNA4_5end|id=chr20:62009349..62009358,-|ontology_enrichment_celltype=CL:0000540!5.95e-21!6;CL:0000031!5.95e-21!6;CL:0000404!5.95e-21!6;CL:0000047!7.00e-16!8|ontology_enrichment_celltype_v019=CL:0000540;7.07e-34;6!CL:0000404;7.07e-34;6!CL:0002319;2.06e-08;25|ontology_enrichment_celltype_v019_2=CL:0000540,7.07e-34,6;CL:0000031,7.07e-34,6;CL:0000404,7.07e-34,6;CL:0000047,9.81e-26,8;CL:0002319,2.06e-08,25|ontology_enrichment_development_v019=CL:0000031;7.07e-34;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001950!5.41e-30!20;UBERON:0002619!2.36e-27!22;UBERON:0000956!3.76e-24!25;UBERON:0000203!3.76e-24!25;UBERON:0001869!6.14e-19!32;UBERON:0002791!2.28e-18!33;UBERON:0000073!2.50e-18!94;UBERON:0001016!2.50e-18!94;UBERON:0001017!7.27e-18!82;UBERON:0002020!7.88e-18!34;UBERON:0003528!7.88e-18!34;UBERON:0001893!7.88e-18!34;UBERON:0005743!5.35e-17!86;UBERON:0002780!8.86e-15!41;UBERON:0001890!8.86e-15!41;UBERON:0006240!8.86e-15!41;UBERON:0002581!1.84e-14!1;UBERON:0003080!2.01e-14!42;UBERON:0002022!3.15e-14!1;UBERON:0001872!2.06e-11!5;UBERON:0000955!3.93e-11!69;UBERON:0006238!3.93e-11!69;UBERON:0001049!1.47e-10!57;UBERON:0005068!1.47e-10!57;UBERON:0006241!1.47e-10!57;UBERON:0007135!1.47e-10!57;UBERON:0002616!3.45e-10!59;UBERON:0003056!7.67e-10!61;UBERON:0004121!1.01e-09!169;UBERON:0000924!1.82e-09!173;UBERON:0006601!1.82e-09!173;UBERON:0001870!8.60e-08!2;UBERON:0001871!1.45e-07!7;UBERON:0003075!7.59e-07!86;UBERON:0007284!7.59e-07!86|ontology_enrichment_uberon_v019=UBERON:0002021;3.26e-11;5|ontology_enrichment_uberon_v019_2=UBERON:0002021,3.60e-11,5;UBERON:0001017,2.17e-10,81;UBERON:0001016,1.88e-09,89|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,3.18280904135263,1.91381625495949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00828678488687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p10@CHRNA4}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=1137 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1958 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-4bp_to_ENST00000463705_5end | |||
|coexpression_cluster_id=C1259 | |||
|description=CAGE_peak_10_at_CHRNA4_5end | |||
|id=chr20:62009349..62009358,- | |||
|ontology_enrichment_celltype=CL:0000540!5.95e-21!6;CL:0000031!5.95e-21!6;CL:0000404!5.95e-21!6;CL:0000047!7.00e-16!8 | |||
|ontology_enrichment_celltype_v019=CL:0000540;7.07e-34;6!CL:0000404;7.07e-34;6!CL:0002319;2.06e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,7.07e-34,6;CL:0000031,7.07e-34,6;CL:0000404,7.07e-34,6;CL:0000047,9.81e-26,8;CL:0002319,2.06e-08,25 | |||
|ontology_enrichment_development_v019=CL:0000031;7.07e-34;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001950!5.41e-30!20;UBERON:0002619!2.36e-27!22;UBERON:0000956!3.76e-24!25;UBERON:0000203!3.76e-24!25;UBERON:0001869!6.14e-19!32;UBERON:0002791!2.28e-18!33;UBERON:0000073!2.50e-18!94;UBERON:0001016!2.50e-18!94;UBERON:0001017!7.27e-18!82;UBERON:0002020!7.88e-18!34;UBERON:0003528!7.88e-18!34;UBERON:0001893!7.88e-18!34;UBERON:0005743!5.35e-17!86;UBERON:0002780!8.86e-15!41;UBERON:0001890!8.86e-15!41;UBERON:0006240!8.86e-15!41;UBERON:0002581!1.84e-14!1;UBERON:0003080!2.01e-14!42;UBERON:0002022!3.15e-14!1;UBERON:0001872!2.06e-11!5;UBERON:0000955!3.93e-11!69;UBERON:0006238!3.93e-11!69;UBERON:0001049!1.47e-10!57;UBERON:0005068!1.47e-10!57;UBERON:0006241!1.47e-10!57;UBERON:0007135!1.47e-10!57;UBERON:0002616!3.45e-10!59;UBERON:0003056!7.67e-10!61;UBERON:0004121!1.01e-09!169;UBERON:0000924!1.82e-09!173;UBERON:0006601!1.82e-09!173;UBERON:0001870!8.60e-08!2;UBERON:0001871!1.45e-07!7;UBERON:0003075!7.59e-07!86;UBERON:0007284!7.59e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002021;3.26e-11;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,3.60e-11,5;UBERON:0001017,2.17e-10,81;UBERON:0001016,1.88e-09,89 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,3.18280904135263,1.91381625495949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00828678488687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p10@CHRNA4 | |||
}} |
Revision as of 09:35, 12 September 2013
Short description: | p10@CHRNA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_CHRNA4_5end |
Coexpression cluster: | C1259_Neurons_parietal_occipital_temporal_brain_duodenum_glioblastoma |
Association with transcript: | -4bp_to_ENST00000463705_5end |
EntrezGene: | CHRNA4 |
HGNC: | 1958 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 7.07e-34 | 6 |
neuroblast | 7.07e-34 | 6 |
electrically signaling cell | 7.07e-34 | 6 |
neuronal stem cell | 9.81e-26 | 8 |
neural cell | 2.06e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
occipital lobe | 3.60e-11 | 5 |
central nervous system | 2.17e-10 | 81 |
nervous system | 1.88e-09 | 89 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.