FFCP PHASE1:Hg19::chr20:12989873..12989887,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55304|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16253|TSSclassifier=S|UniProt=C9JC36|association_with_transcript=51bp_to_ENST00000378194_5end|coexpression_cluster_id=C34|description=CAGE_peak_4_at_SPTLC3_5end|id=chr20:12989873..12989887,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000135;7.91e-09;3!CL:0002623;7.91e-09;3!CL:0000388;7.91e-09;3!CL:0002602;3.10e-07;2|ontology_enrichment_celltype_v019_2=CL:0002623,4.41e-09,3;CL:0000135,1.20e-08,3;CL:0000388,1.20e-08,3;CL:0002602,3.04e-07,2|ontology_enrichment_development_v019=UBERON:0006241;7.91e-09;3!UBERON:0003057;7.91e-09;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.03e-14!115;UBERON:0000062!9.58e-11!511;UBERON:0000468!2.06e-10!659;UBERON:0000467!6.64e-09!625;UBERON:0000481!7.26e-09!347;UBERON:0000480!8.66e-09!626;UBERON:0002530!3.05e-08!59;UBERON:0000922!3.58e-08!612;UBERON:0004119!4.51e-08!169;UBERON:0000925!4.51e-08!169;UBERON:0006595!4.51e-08!169;UBERON:0000923!5.76e-08!604;UBERON:0005291!5.76e-08!604;UBERON:0006598!5.76e-08!604;UBERON:0002532!5.76e-08!604;UBERON:0002050!7.39e-08!605;UBERON:0005423!7.39e-08!605;UBERON:0000477!9.65e-08!286;UBERON:0001007!1.95e-07!155;UBERON:0001555!1.95e-07!155;UBERON:0007026!1.95e-07!155;UBERON:0004121!3.37e-07!169;UBERON:0000475!9.84e-07!365|ontology_enrichment_uberon_v019=UBERON:0001044;2.35e-16;6!UBERON:0003293;2.35e-16;6!UBERON:0003294;2.35e-16;6!UBERON:0010047;2.35e-16;6!UBERON:0003408;2.35e-16;6!UBERON:0000167;2.35e-16;6!UBERON:0002240;7.91e-09;3!UBERON:0007846;7.91e-09;3!UBERON:0005174;7.91e-09;3!UBERON:0000043;7.91e-09;3!UBERON:0007845;7.91e-09;3!UBERON:0001137;7.91e-09;3!UBERON:0000478;3.62e-08;24!UBERON:0000161;6.19e-08;19!UBERON:0000166;6.19e-08;19!UBERON:0005631;2.82e-07;10!UBERON:0000158;2.82e-07;10!UBERON:0006444;3.10e-07;2!UBERON:0001995;3.10e-07;2!UBERON:0004715;3.10e-07;2!UBERON:0001829;5.70e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0001044,8.69e-17,6;UBERON:0003293,8.69e-17,6;UBERON:0003294,8.69e-17,6;UBERON:0010047,8.69e-17,6;UBERON:0000167,8.69e-17,6;UBERON:0003408,9.38e-10,10;UBERON:0005631,1.98e-09,14;UBERON:0000158,1.98e-09,14;UBERON:0002240,4.66e-09,3;UBERON:0005174,4.66e-09,3;UBERON:0001137,4.66e-09,3;UBERON:0007846,1.20e-08,3;UBERON:0000043,1.20e-08,3;UBERON:0007845,1.20e-08,3;UBERON:0000478,4.19e-08,24;UBERON:0006444,3.04e-07,2;UBERON:0001995,3.04e-07,2;UBERON:0004715,3.04e-07,2;UBERON:0004175,3.43e-07,25;UBERON:0003124,4.33e-07,7;UBERON:0001829,6.47e-07,2;UBERON:0000166,7.94e-07,22|phase1_expression=0,0.428201047781966,0.281908808191942,0,0,0,0,0,0,0,0,0,0.263766978228454,5.69325223616215,4.30816588446291,0,0,0,0,0.61560529038394,0,0.313454721478088,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,1.0843174571537,0,1.44846518960824,0,0,0.378139268656271,0,0,0.458426764241994,0,0,0.324547393654683,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0.379891534993739,0.397227542439656,0.286836620748814,0.354668382198357,0,0,0,0.622422070799533,0,0,0.605429710579726,1.15235184896,0,0,0,0,0.117434498643765,0.161872944368132,0,0.204154171254893,0,1.65321249881225,0,0,0,0,0,0,0.554128230968366,0,0.30648779579902,0.150238058906597,0,0,0.213557388818567,0,0,0,0.515281080091258,0.18611685633159,0.168776332241266,0,0,0.0920498986422993,2.26304479546337,0,0,0,0.386521706326594,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0.464367928031979,1.44375896333917,0.236613600079688,0,0.482022059766964,0.441175890929576,0,0,0.269662616320329,0,0.38474715694639,0,0,0,0,2.53510069643662,0,1.77236972004421,0,1.10689594688802,0.686271241194102,0.768251997860379,0,0,0.277765335475589,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0.806026704325635,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5867062865676,0.258543431515556,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0.301439377059586,0,0.299918973546171,0,0,0,0,1.14861935834114,0,0.144781306667579,1.02738161275192,0.895304816199478,0,0,0,0,0,1.30139853857622,1.54657762555539,0,0,0,0,0,2.94459580125936,0.500170521059677,0.271265023699736,0,0.535286966391485,0,0.468565659970853,0.300946099727719,0,1.03473071292505,0,0,0.173767228936166,0,0,0,0,0,0,1.66435439510497,0.907170879989041,0.248107807818777,0.153461973288062,0,0.256278298511402,0,0,0,0,0.177561725313127,0.821271560138091,0,0.232420756919918,0.362578348774867,0,0,0.114814448164607,0,0.393373244878272,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,17.5169719801128,0.0915694648183434,0.082509499920588,0.574265537996172,0,0,0.193341436584244,0.462145851343933,0.307007349452259,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55304 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16253 | |||
|TSSclassifier=S | |||
|UniProt=C9JC36 | |||
|association_with_transcript=51bp_to_ENST00000378194_5end | |||
|coexpression_cluster_id=C34 | |||
|description=CAGE_peak_4_at_SPTLC3_5end | |||
|id=chr20:12989873..12989887,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000135;7.91e-09;3!CL:0002623;7.91e-09;3!CL:0000388;7.91e-09;3!CL:0002602;3.10e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002623,4.41e-09,3;CL:0000135,1.20e-08,3;CL:0000388,1.20e-08,3;CL:0002602,3.04e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006241;7.91e-09;3!UBERON:0003057;7.91e-09;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.03e-14!115;UBERON:0000062!9.58e-11!511;UBERON:0000468!2.06e-10!659;UBERON:0000467!6.64e-09!625;UBERON:0000481!7.26e-09!347;UBERON:0000480!8.66e-09!626;UBERON:0002530!3.05e-08!59;UBERON:0000922!3.58e-08!612;UBERON:0004119!4.51e-08!169;UBERON:0000925!4.51e-08!169;UBERON:0006595!4.51e-08!169;UBERON:0000923!5.76e-08!604;UBERON:0005291!5.76e-08!604;UBERON:0006598!5.76e-08!604;UBERON:0002532!5.76e-08!604;UBERON:0002050!7.39e-08!605;UBERON:0005423!7.39e-08!605;UBERON:0000477!9.65e-08!286;UBERON:0001007!1.95e-07!155;UBERON:0001555!1.95e-07!155;UBERON:0007026!1.95e-07!155;UBERON:0004121!3.37e-07!169;UBERON:0000475!9.84e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0001044;2.35e-16;6!UBERON:0003293;2.35e-16;6!UBERON:0003294;2.35e-16;6!UBERON:0010047;2.35e-16;6!UBERON:0003408;2.35e-16;6!UBERON:0000167;2.35e-16;6!UBERON:0002240;7.91e-09;3!UBERON:0007846;7.91e-09;3!UBERON:0005174;7.91e-09;3!UBERON:0000043;7.91e-09;3!UBERON:0007845;7.91e-09;3!UBERON:0001137;7.91e-09;3!UBERON:0000478;3.62e-08;24!UBERON:0000161;6.19e-08;19!UBERON:0000166;6.19e-08;19!UBERON:0005631;2.82e-07;10!UBERON:0000158;2.82e-07;10!UBERON:0006444;3.10e-07;2!UBERON:0001995;3.10e-07;2!UBERON:0004715;3.10e-07;2!UBERON:0001829;5.70e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001044,8.69e-17,6;UBERON:0003293,8.69e-17,6;UBERON:0003294,8.69e-17,6;UBERON:0010047,8.69e-17,6;UBERON:0000167,8.69e-17,6;UBERON:0003408,9.38e-10,10;UBERON:0005631,1.98e-09,14;UBERON:0000158,1.98e-09,14;UBERON:0002240,4.66e-09,3;UBERON:0005174,4.66e-09,3;UBERON:0001137,4.66e-09,3;UBERON:0007846,1.20e-08,3;UBERON:0000043,1.20e-08,3;UBERON:0007845,1.20e-08,3;UBERON:0000478,4.19e-08,24;UBERON:0006444,3.04e-07,2;UBERON:0001995,3.04e-07,2;UBERON:0004715,3.04e-07,2;UBERON:0004175,3.43e-07,25;UBERON:0003124,4.33e-07,7;UBERON:0001829,6.47e-07,2;UBERON:0000166,7.94e-07,22 | |||
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| |||
|short_description=p4@SPTLC3 | |||
}} |
Revision as of 07:31, 12 September 2013
Short description: | p4@SPTLC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_SPTLC3_5end |
Coexpression cluster: | C34_placenta_chorionic_choriocarcinoma_mesothelioma_Wilms_Smooth_bile |
Association with transcript: | 51bp_to_ENST00000378194_5end |
EntrezGene: | SPTLC3 |
HGNC: | 16253 |
UniProt: | C9JC36 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell of salivary gland | 4.41e-09 | 3 |
fibrocyte | 1.20e-08 | 3 |
tendon cell | 1.20e-08 | 3 |
annulus pulposus cell | 3.04e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
saliva-secreting gland | 8.69e-17 | 6 |
gland of oral region | 8.69e-17 | 6 |
gland of foregut | 8.69e-17 | 6 |
oral gland | 8.69e-17 | 6 |
oral cavity | 8.69e-17 | 6 |
gland of gut | 9.38e-10 | 10 |
extraembryonic membrane | 1.98e-09 | 14 |
membranous layer | 1.98e-09 | 14 |
spinal cord | 4.66e-09 | 3 |
dorsal region element | 4.66e-09 | 3 |
dorsum | 4.66e-09 | 3 |
dense regular connective tissue | 1.20e-08 | 3 |
tendon | 1.20e-08 | 3 |
regular connective tissue | 1.20e-08 | 3 |
extraembryonic structure | 4.19e-08 | 24 |
annulus fibrosus | 3.04e-07 | 2 |
fibrocartilage | 3.04e-07 | 2 |
annulus fibrosus disci intervertebralis | 3.04e-07 | 2 |
internal genitalia | 3.43e-07 | 25 |
chorion | 4.33e-07 | 7 |
major salivary gland | 6.47e-07 | 2 |
oral opening | 7.94e-07 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.