FFCP PHASE1:Hg19::chr2:189157536..189157565,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=51454|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18649|TSSclassifier=S|UniProt=Q9UBP9|association_with_transcript=0bp_to_ENST00000409580,ENST00000409637,uc002uqg.2_5end|coexpression_cluster_id=C1267|description=CAGE_peak_1_at_GULP1_5end|id=chr2:189157536..189157565,+|ontology_enrichment_celltype=CL:0000075!3.48e-09!27;CL:0000055!2.29e-08!180;CL:0000710!2.50e-07!20;CL:0000133!2.87e-07!59|ontology_enrichment_celltype_v019=CL:0000075;1.15e-09;27!CL:0000710;6.61e-08;20|ontology_enrichment_celltype_v019_2=CL:0000075,9.67e-10,27;CL:0000710,8.77e-08,20;CL:0000133,2.85e-07,59|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:0050687!2.40e-09!143;DOID:305!5.72e-08!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:0050687,1.71e-09,143;DOID:305,4.89e-08,106|ontology_enrichment_uberon=UBERON:0000481!3.32e-18!347;UBERON:0000475!2.42e-11!365;UBERON:0002100!5.22e-11!216;UBERON:0001007!5.91e-11!155;UBERON:0001555!5.91e-11!155;UBERON:0007026!5.91e-11!155;UBERON:0003104!6.11e-11!238;UBERON:0009142!6.11e-11!238;UBERON:0003886!9.66e-10!63;UBERON:0000464!2.29e-09!104;UBERON:0000468!3.52e-09!659;UBERON:0004119!6.03e-09!169;UBERON:0000925!6.03e-09!169;UBERON:0006595!6.03e-09!169;UBERON:0005409!2.56e-08!35;UBERON:0005156!3.44e-08!59;UBERON:0000990!3.44e-08!59;UBERON:0002553!5.00e-08!70;UBERON:0000064!5.84e-08!219;UBERON:0004458!7.28e-08!49;UBERON:0002323!8.00e-08!46;UBERON:0004921!1.09e-07!129;UBERON:0004185!1.09e-07!129;UBERON:0000922!1.24e-07!612;UBERON:0000466!1.90e-07!126;UBERON:0000160!2.72e-07!27;UBERON:0003064!3.09e-07!37;UBERON:0000077!6.38e-07!130;UBERON:0000477!8.80e-07!286|ontology_enrichment_uberon_v019=UBERON:0005409;4.35e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0004458,2.63e-08,49;UBERON:0002323,2.89e-08,46;UBERON:0001007,7.87e-08,145;UBERON:0001555,7.87e-08,145;UBERON:0007026,7.87e-08,145;UBERON:0002100,7.99e-08,199;UBERON:0003886,9.17e-08,54;UBERON:0005156,1.93e-07,59;UBERON:0000990,1.93e-07,59|phase1_expression=5.81370813665781,2.5692062866918,9.16203626623813,1.0007329835313,5.36353313312745,3.48935409640147,0,3.15859936713415,0.522371256399677,0.737201809504527,0.697801167972428,3.49506195408276,3.16520373874144,4.08428964768154,2.65117900582333,4.03395087871065,4.21886169616784,3.65155045193687,2.92759679274304,4.92484232307152,2.65200898617529,0.313454721478088,10.8769675109802,8.75996320466459,4.14290710662849,0,0,0,0,0,0.464448369948228,0.919421224478927,0.30120591877825,0.369754010166788,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35350429851818,0.639312809217652,6.50590474292219,4.51204119572301,4.92478164466801,3.9764297352555,3.40644409211845,8.12999427610984,5.5432349365641,6.0606002128257,3.53643503843824,0,0,0,0,0,0,0,0,4.17401055470081,3.4409383804245,2.08284300964557,1.69592382577203,2.09749718104953,0.825354125820202,1.46296476575767,2.06733407335463,2.13459757612026,3.68192674041137,0.402829317109147,0,0,5.14728312484216,1.62028389576352,2.76829157680647,3.81699933464489,3.82879033643296,0,0,1.09921046358244,0,0,0,18.3879622127268,2.65924074495618,1.72131935057184,1.43418310374407,1.77334191099179,1.12135520028461,6.4049397437823,2.96001058100592,3.7345324247972,3.3677668017422,1.14423332179421,3.02714855289863,0.576175924479999,0.468642863667593,0.936480230490962,1.1409436430889,2.24173020827702,1.64408298101271,2.5899671098901,2.24721290723598,6.32877930890169,4.29920110591188,7.74943358818241,3.56400857184616,6.42894016124248,0,1.43723628363248,6.73344455816265,5.75545191411035,8.03485934904131,4.82875382968922,2.45190236639216,7.51190294532984,2.26864366320042,0.538168907066586,2.98980344345994,0.211931901159562,0,0.92747276314595,2.83404594050192,3.35010341396862,0.168776332241266,1.36411807225678,1.51460264546469,1.19664868234989,8.72888706821584,1.77504796258307,1.20902517873168,2.37384829234683,6.3776081543888,0.545492241181669,3.15485054927904,44.2764553250431,34.7227993002291,23.4711764596427,34.8301144851645,33.0540314647073,34.6728491122038,0,7.07565032012174,1.38134921352481,2.3218396401599,2.88751792667834,2.12952240071719,3.37169380156203,1.68707720918437,2.42646740011267,2.61455332910887,3.08451804844426,2.15730093056263,4.12065076763227,2.69323009862473,0.738155454624648,0,0.8231480226628,1.47008711385542,0,0,0.590789906681404,0,9.83907508344908,2.23038153388083,0.548751427043128,0,0.201057944823262,0.925884451585296,1.95484983186195,1.03993478527958,2.88662684050547,5.91245065372892,4.93116515790451,0.144366447761074,0,0.190254152234598,0.790204397959275,0.858486162094873,0,0,0,3.74935335947108,0,0.141775097242386,0.895585227028483,0,1.15014803749563,0,0,0,0,0,5.77830838058738,7.63976851116555,8.20522130470329,1.71072446022705,8.43185440167253,2.10240140490742,17.7212388230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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=51454 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18649 | |||
|TSSclassifier=S | |||
|UniProt=Q9UBP9 | |||
|association_with_transcript=0bp_to_ENST00000409580,ENST00000409637,uc002uqg.2_5end | |||
|coexpression_cluster_id=C1267 | |||
|description=CAGE_peak_1_at_GULP1_5end | |||
|id=chr2:189157536..189157565,+ | |||
|ontology_enrichment_celltype=CL:0000075!3.48e-09!27;CL:0000055!2.29e-08!180;CL:0000710!2.50e-07!20;CL:0000133!2.87e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000075;1.15e-09;27!CL:0000710;6.61e-08;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000075,9.67e-10,27;CL:0000710,8.77e-08,20;CL:0000133,2.85e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!2.40e-09!143;DOID:305!5.72e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.71e-09,143;DOID:305,4.89e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0000481!3.32e-18!347;UBERON:0000475!2.42e-11!365;UBERON:0002100!5.22e-11!216;UBERON:0001007!5.91e-11!155;UBERON:0001555!5.91e-11!155;UBERON:0007026!5.91e-11!155;UBERON:0003104!6.11e-11!238;UBERON:0009142!6.11e-11!238;UBERON:0003886!9.66e-10!63;UBERON:0000464!2.29e-09!104;UBERON:0000468!3.52e-09!659;UBERON:0004119!6.03e-09!169;UBERON:0000925!6.03e-09!169;UBERON:0006595!6.03e-09!169;UBERON:0005409!2.56e-08!35;UBERON:0005156!3.44e-08!59;UBERON:0000990!3.44e-08!59;UBERON:0002553!5.00e-08!70;UBERON:0000064!5.84e-08!219;UBERON:0004458!7.28e-08!49;UBERON:0002323!8.00e-08!46;UBERON:0004921!1.09e-07!129;UBERON:0004185!1.09e-07!129;UBERON:0000922!1.24e-07!612;UBERON:0000466!1.90e-07!126;UBERON:0000160!2.72e-07!27;UBERON:0003064!3.09e-07!37;UBERON:0000077!6.38e-07!130;UBERON:0000477!8.80e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;4.35e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004458,2.63e-08,49;UBERON:0002323,2.89e-08,46;UBERON:0001007,7.87e-08,145;UBERON:0001555,7.87e-08,145;UBERON:0007026,7.87e-08,145;UBERON:0002100,7.99e-08,199;UBERON:0003886,9.17e-08,54;UBERON:0005156,1.93e-07,59;UBERON:0000990,1.93e-07,59 | |||
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| |||
|short_description=p1@GULP1 | |||
}} |
Revision as of 15:37, 12 September 2013
Short description: | p1@GULP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_GULP1_5end |
Coexpression cluster: | C1267_bile_placenta_lung_iPS_H9_clear_melanoma |
Association with transcript: | 0bp_to_ENST00000409580, ENST00000409637, uc002uqg.2_5end |
EntrezGene: | GULP1 |
HGNC: | 18649 |
UniProt: | Q9UBP9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
columnar/cuboidal epithelial cell | 9.67e-10 | 27 |
neurecto-epithelial cell | 8.77e-08 | 20 |
neurectodermal cell | 2.85e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
body cavity or lining | 2.63e-08 | 49 |
body cavity | 2.89e-08 | 46 |
digestive system | 7.87e-08 | 145 |
digestive tract | 7.87e-08 | 145 |
primitive gut | 7.87e-08 | 145 |
trunk | 7.99e-08 | 199 |
body cavity precursor | 9.17e-08 | 54 |
reproductive structure | 1.93e-07 | 59 |
reproductive system | 1.93e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.71e-09 | 143 |
carcinoma | 4.89e-08 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.