FFCP PHASE1:Hg19::chr2:174828836..174828885,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6670|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11208|TSSclassifier=S|UniProt=Q02447,Q59FX5|association_with_transcript=61bp_to_ENST00000418194,NM_001017371,uc002uie.2_5end|description=CAGE_peak_5_at_SP3_5end|id=chr2:174828836..174828885,-|ontology_enrichment_celltype=CL:0000766!3.44e-19!76;CL:0002057!1.36e-17!42;CL:0000738!2.28e-17!140;CL:0000839!1.90e-16!70;CL:0000557!1.42e-15!71;CL:0000037!1.98e-15!172;CL:0000566!1.98e-15!172;CL:0002031!7.90e-15!124;CL:0000860!1.25e-14!45;CL:0002087!1.75e-14!119;CL:0002194!3.80e-14!63;CL:0000576!3.80e-14!63;CL:0000040!3.80e-14!63;CL:0000559!3.80e-14!63;CL:0002032!2.09e-13!165;CL:0000837!2.09e-13!165;CL:0002009!2.74e-13!65;CL:0000988!1.22e-12!182;CL:0000763!1.26e-12!112;CL:0000049!1.26e-12!112;CL:0002320!7.75e-10!365;CL:0000219!1.09e-09!390;CL:0000134!1.28e-09!358|ontology_enrichment_celltype_v019=CL:0000576;7.77e-12;48!CL:0000860;4.68e-11;33!CL:0002057;4.68e-11;33!CL:0000766;5.50e-10;69!CL:0000473;2.30e-08;39!CL:0000234;2.30e-08;39|ontology_enrichment_celltype_v019_2=CL:0000766,8.03e-22,72;CL:0000738,6.05e-19,136;CL:0000839,6.08e-19,66;CL:0000557,6.01e-18,67;CL:0000860,1.26e-17,42;CL:0002057,1.26e-17,42;CL:0000037,9.75e-17,168;CL:0002194,1.47e-16,59;CL:0000576,1.47e-16,59;CL:0000040,1.47e-16,59;CL:0000559,1.47e-16,59;CL:0002031,2.08e-16,120;CL:0002087,4.44e-16,115;CL:0002009,1.53e-15,61;CL:0000473,3.09e-15,48;CL:0000234,3.09e-15,48;CL:0002032,1.26e-14,161;CL:0000837,1.26e-14,161;CL:0000988,2.80e-14,177;CL:0000763,4.16e-14,108;CL:0000049,4.16e-14,108;CL:0002320,5.72e-11,361;CL:0000219,8.38e-11,386;CL:0000134,9.93e-11,354|ontology_enrichment_development_v019=CL:0002057;1.88e-12;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!2.07e-16!102;UBERON:0003061!2.07e-16!102;UBERON:0004765!1.62e-15!101;UBERON:0001434!1.62e-15!101;UBERON:0001474!5.70e-15!86;UBERON:0002371!1.33e-14!80;UBERON:0002193!4.12e-14!112;UBERON:0002384!3.28e-10!375;UBERON:0002405!2.89e-09!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.31e-18,98;UBERON:0003061,2.31e-18,98;UBERON:0001434,4.79e-18,100;UBERON:0001474,5.92e-17,82;UBERON:0002371,1.19e-16,76;UBERON:0004765,1.63e-16,90;UBERON:0002193,1.26e-15,108;UBERON:0002405,1.13e-13,93;UBERON:0002384,2.33e-11,371;UBERON:0002204,5.61e-07,167|phase1_expression=2.72517568905835,1.92690471501885,1.12763523276777,3.00219895059391,2.68176656656373,0.872338524100369,0,2.52687949370732,1.82829939739887,0.982935746006035,0,1.09220686065086,1.58260186937072,2.84662611808107,3.64537113300707,1.34465029290355,1.20538905604795,2.19093027116212,1.46379839637152,0.369363174230364,1.02000345622126,0.940364164434263,4.86601178122796,3.55873505189499,5.52387614217132,1.60468152070698,1.23150884174919,1.81034797021462,3.14691421479123,2.30297638858328,9.28896739896456,1.83884244895785,0.30120591877825,0.739508020333575,4.5705648342378,1.13735385989937,4.11040615068786,6.09394949385065,9.82667792603694,8.68043482863407,5.37397138175818,3.56283032620878,3.34848237924443,8.14230137165562,6.80176698639857,6.30718559088322,5.57829688573643,5.34518254428373,4.64559556342655,2.58923153089935,3.58624989140741,3.07426898855161,6.89491361473237,5.16387746867061,2.70852973188684,6.77672422353377,6.82265375144614,3.82029923556644,6.73384563215986,6.09765151444578,7.03270838378945,4.28806690242731,3.98927315243264,2.98357325372886,4.35313857942876,4.53908179752912,4.35975574296902,6.53246529667532,5.73631210262222,4.56096573880745,2.42159801053347,2.94622108790052,3.79754864929061,4.43636101255078,4.67729459923096,5.45112478321777,5.05478840159228,3.90459921387916,5.46466994770072,10.8304842621674,7.16100037916724,6.57590953552682,3.51992488922645,5.46138611262132,3.55803701545422,4.26730222566507,4.80475184443215,4.59801951963587,2.64417949113945,3.81621501814146,5.69212969109448,1.76171156811282,6.88091810625412,6.60856642895129,5.60508562981536,3.16060901730092,9.24535919535015,6.28817220398664,6.5792479679843,1.83905144929746,2.93330039970231,3.31413464014313,7.79306913631645,2.1167986808183,2.3568472597987,3.54454231333794,2.16643091012012,1.0247305578054,2.47112760363769,2.63100647365882,3.86890024900188,2.31842468588042,3.85545064221357,3.21048993707656,3.1360657141493,2.03956816855619,1.14966148080576,4.46715679127419,1.77113784413652,4.14135038621326,5.85975108470777,1.90090408889675,4.21610333417764,3.07167866770604,2.49861453104692,2.13099526839615,1.64225599384209,3.62892137804518,3.20928234940209,3.18613688542158,2.43806866313962,2.01210257911091,1.66221330396589,3.61439152384566,0.50133791063589,2.89693037921647,0.795285947051099,2.91980922181582,5.38848457835187,3.32594096193846,3.42555664203192,1.63723844372141,0.728590576585084,0.741568885568859,4.54366351116557,2.78607579678828,2.6591592103773,4.29283123749616,4.57595928624102,3.71457501329565,2.18638648103376,0,2.42998351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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6670 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11208 | |||
|TSSclassifier=S | |||
|UniProt=Q02447,Q59FX5 | |||
|association_with_transcript=61bp_to_ENST00000418194,NM_001017371,uc002uie.2_5end | |||
|description=CAGE_peak_5_at_SP3_5end | |||
|id=chr2:174828836..174828885,- | |||
|ontology_enrichment_celltype=CL:0000766!3.44e-19!76;CL:0002057!1.36e-17!42;CL:0000738!2.28e-17!140;CL:0000839!1.90e-16!70;CL:0000557!1.42e-15!71;CL:0000037!1.98e-15!172;CL:0000566!1.98e-15!172;CL:0002031!7.90e-15!124;CL:0000860!1.25e-14!45;CL:0002087!1.75e-14!119;CL:0002194!3.80e-14!63;CL:0000576!3.80e-14!63;CL:0000040!3.80e-14!63;CL:0000559!3.80e-14!63;CL:0002032!2.09e-13!165;CL:0000837!2.09e-13!165;CL:0002009!2.74e-13!65;CL:0000988!1.22e-12!182;CL:0000763!1.26e-12!112;CL:0000049!1.26e-12!112;CL:0002320!7.75e-10!365;CL:0000219!1.09e-09!390;CL:0000134!1.28e-09!358 | |||
|ontology_enrichment_celltype_v019=CL:0000576;7.77e-12;48!CL:0000860;4.68e-11;33!CL:0002057;4.68e-11;33!CL:0000766;5.50e-10;69!CL:0000473;2.30e-08;39!CL:0000234;2.30e-08;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,8.03e-22,72;CL:0000738,6.05e-19,136;CL:0000839,6.08e-19,66;CL:0000557,6.01e-18,67;CL:0000860,1.26e-17,42;CL:0002057,1.26e-17,42;CL:0000037,9.75e-17,168;CL:0002194,1.47e-16,59;CL:0000576,1.47e-16,59;CL:0000040,1.47e-16,59;CL:0000559,1.47e-16,59;CL:0002031,2.08e-16,120;CL:0002087,4.44e-16,115;CL:0002009,1.53e-15,61;CL:0000473,3.09e-15,48;CL:0000234,3.09e-15,48;CL:0002032,1.26e-14,161;CL:0000837,1.26e-14,161;CL:0000988,2.80e-14,177;CL:0000763,4.16e-14,108;CL:0000049,4.16e-14,108;CL:0002320,5.72e-11,361;CL:0000219,8.38e-11,386;CL:0000134,9.93e-11,354 | |||
|ontology_enrichment_development_v019=CL:0002057;1.88e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.07e-16!102;UBERON:0003061!2.07e-16!102;UBERON:0004765!1.62e-15!101;UBERON:0001434!1.62e-15!101;UBERON:0001474!5.70e-15!86;UBERON:0002371!1.33e-14!80;UBERON:0002193!4.12e-14!112;UBERON:0002384!3.28e-10!375;UBERON:0002405!2.89e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.31e-18,98;UBERON:0003061,2.31e-18,98;UBERON:0001434,4.79e-18,100;UBERON:0001474,5.92e-17,82;UBERON:0002371,1.19e-16,76;UBERON:0004765,1.63e-16,90;UBERON:0002193,1.26e-15,108;UBERON:0002405,1.13e-13,93;UBERON:0002384,2.33e-11,371;UBERON:0002204,5.61e-07,167 | |||
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| |||
|short_description=p5@SP3 | |||
}} |
Revision as of 14:44, 12 September 2013
Short description: | p5@SP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_SP3_5end |
Coexpression cluster: | NA |
Association with transcript: | 61bp_to_ENST00000418194, NM_001017371, uc002uie.2_5end |
EntrezGene: | SP3 |
HGNC: | 11208 |
UniProt: | Q02447Q59FX5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 8.03e-22 | 72 |
leukocyte | 6.05e-19 | 136 |
myeloid lineage restricted progenitor cell | 6.08e-19 | 66 |
granulocyte monocyte progenitor cell | 6.01e-18 | 67 |
classical monocyte | 1.26e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.26e-17 | 42 |
hematopoietic stem cell | 9.75e-17 | 168 |
monopoietic cell | 1.47e-16 | 59 |
monocyte | 1.47e-16 | 59 |
monoblast | 1.47e-16 | 59 |
promonocyte | 1.47e-16 | 59 |
hematopoietic lineage restricted progenitor cell | 2.08e-16 | 120 |
nongranular leukocyte | 4.44e-16 | 115 |
macrophage dendritic cell progenitor | 1.53e-15 | 61 |
defensive cell | 3.09e-15 | 48 |
phagocyte | 3.09e-15 | 48 |
hematopoietic oligopotent progenitor cell | 1.26e-14 | 161 |
hematopoietic multipotent progenitor cell | 1.26e-14 | 161 |
hematopoietic cell | 2.80e-14 | 177 |
myeloid cell | 4.16e-14 | 108 |
common myeloid progenitor | 4.16e-14 | 108 |
connective tissue cell | 5.72e-11 | 361 |
motile cell | 8.38e-11 | 386 |
mesenchymal cell | 9.93e-11 | 354 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.31e-18 | 98 |
blood island | 2.31e-18 | 98 |
skeletal system | 4.79e-18 | 100 |
bone element | 5.92e-17 | 82 |
bone marrow | 1.19e-16 | 76 |
skeletal element | 1.63e-16 | 90 |
hemolymphoid system | 1.26e-15 | 108 |
immune system | 1.13e-13 | 93 |
connective tissue | 2.33e-11 | 371 |
musculoskeletal system | 5.61e-07 | 167 |
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